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|ontology_enrichment_disease=DOID:2394!5.48e-10!14
|ontology_enrichment_disease=DOID:2394!5.48e-10!14
|ontology_enrichment_uberon=UBERON:0004111!2.77e-31!241;UBERON:0000025!6.53e-28!194;UBERON:0000477!7.47e-28!286;UBERON:0007023!1.57e-27!115;UBERON:0004872!2.08e-26!84;UBERON:0000483!4.03e-24!309;UBERON:0000119!3.24e-23!312;UBERON:0001637!5.71e-20!42;UBERON:0003509!5.71e-20!42;UBERON:0004572!5.71e-20!42;UBERON:0002385!1.66e-19!63;UBERON:0001015!1.66e-19!63;UBERON:0000383!1.66e-19!63;UBERON:0000481!5.65e-19!347;UBERON:0001981!1.40e-18!60;UBERON:0007500!1.40e-18!60;UBERON:0004537!1.40e-18!60;UBERON:0006965!1.40e-18!60;UBERON:0001134!1.50e-18!61;UBERON:0002036!1.50e-18!61;UBERON:0003082!1.50e-18!61;UBERON:0003914!2.55e-17!118;UBERON:0000055!6.46e-17!69;UBERON:0004573!8.60e-17!33;UBERON:0004571!8.60e-17!33;UBERON:0007100!1.81e-16!27;UBERON:0000467!3.01e-16!625;UBERON:0000480!4.75e-16!626;UBERON:0000948!4.89e-16!24;UBERON:0005498!4.89e-16!24;UBERON:0004140!4.89e-16!24;UBERON:0009881!4.89e-16!24;UBERON:0004141!4.89e-16!24;UBERON:0003084!4.89e-16!24;UBERON:0007005!4.89e-16!24;UBERON:0004139!4.89e-16!24;UBERON:0004291!4.89e-16!24;UBERON:0000468!6.46e-16!659;UBERON:0000475!1.11e-15!365;UBERON:0001009!1.51e-15!113;UBERON:0000490!2.66e-15!138;UBERON:0004290!3.65e-15!70;UBERON:0004535!7.60e-15!110;UBERON:0002049!3.54e-14!79;UBERON:0007798!3.54e-14!79;UBERON:0001049!3.61e-14!57;UBERON:0005068!3.61e-14!57;UBERON:0006241!3.61e-14!57;UBERON:0007135!3.61e-14!57;UBERON:0002050!1.46e-13!605;UBERON:0005423!1.46e-13!605;UBERON:0000922!2.21e-13!612;UBERON:0000923!3.74e-13!604;UBERON:0005291!3.74e-13!604;UBERON:0006598!3.74e-13!604;UBERON:0002532!3.74e-13!604;UBERON:0003075!6.67e-13!86;UBERON:0007284!6.67e-13!86;UBERON:0000486!1.49e-12!82;UBERON:0003080!2.73e-12!42;UBERON:0002780!4.26e-12!41;UBERON:0001890!4.26e-12!41;UBERON:0006240!4.26e-12!41;UBERON:0002346!8.94e-12!90;UBERON:0002616!1.50e-11!59;UBERON:0005743!2.38e-11!86;UBERON:0001017!3.12e-11!82;UBERON:0000914!6.98e-11!83;UBERON:0002329!6.98e-11!83;UBERON:0003077!6.98e-11!83;UBERON:0003059!6.98e-11!83;UBERON:0007282!6.98e-11!83;UBERON:0009618!6.98e-11!83;UBERON:0007285!6.98e-11!83;UBERON:0001893!4.51e-10!34;UBERON:0002020!4.73e-10!34;UBERON:0003528!4.73e-10!34;UBERON:0002791!6.65e-10!33;UBERON:0000073!7.41e-10!94;UBERON:0001016!7.41e-10!94;UBERON:0001869!1.29e-09!32;UBERON:0001135!1.29e-09!15;UBERON:0000955!1.80e-09!69;UBERON:0006238!1.80e-09!69;UBERON:0005256!4.97e-09!143;UBERON:0000947!6.74e-09!21;UBERON:0010191!6.74e-09!21;UBERON:0003056!1.34e-08!61;UBERON:0003103!1.94e-08!69;UBERON:0002100!8.26e-08!216;UBERON:0000956!1.58e-07!25;UBERON:0000203!1.58e-07!25;UBERON:0002619!1.92e-07!22;UBERON:0004237!2.03e-07!10;UBERON:0004695!2.03e-07!10;UBERON:0002111!2.03e-07!10;UBERON:0004178!2.03e-07!10;UBERON:0000153!3.42e-07!129;UBERON:0007811!3.42e-07!129;UBERON:0000033!7.59e-07!123
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}}
}}

Revision as of 17:06, 8 August 2012


Full id: C1289_mesenchymal_Smooth_Cardiac_Mesothelial_Sertoli_leiomyoma_Preadipocyte



Phase1 CAGE Peaks

Hg19::chr9:6215137..6215161,+p@chr9:6215137..6215161
+
Hg19::chr9:6215799..6215815,+p1@IL33
Hg19::chr9:6256728..6256739,+p@chr9:6256728..6256739
+
Hg19::chr9:6256995..6256999,+p@chr9:6256995..6256999
+
Hg19::chr9:6257148..6257157,+p@chr9:6257148..6257157
+
Hg19::chr9:6257179..6257191,+p@chr9:6257179..6257191
+
Hg19::chr9:6257212..6257223,+p@chr9:6257212..6257223
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

No results for this coexpression

Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data

No GOStat results

Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Uber Anatomy
Ontology termp-valuen
anatomical conduit2.77e-31241
tube6.53e-28194
anatomical cluster7.47e-28286
adult organism1.57e-27115
splanchnic layer of lateral plate mesoderm2.08e-2684
epithelium4.03e-24309
cell layer3.24e-23312
artery5.71e-2042
arterial blood vessel5.71e-2042
arterial system5.71e-2042
muscle tissue1.66e-1963
musculature1.66e-1963
musculature of body1.66e-1963
multi-tissue structure5.65e-19347
blood vessel1.40e-1860
epithelial tube open at both ends1.40e-1860
blood vasculature1.40e-1860
vascular cord1.40e-1860
skeletal muscle tissue1.50e-1861
striated muscle tissue1.50e-1861
myotome1.50e-1861
epithelial tube2.55e-17118
vessel6.46e-1769
systemic artery8.60e-1733
systemic arterial system8.60e-1733
primary circulatory organ1.81e-1627
anatomical system3.01e-16625
anatomical group4.75e-16626
heart4.89e-1624
primitive heart tube4.89e-1624
primary heart field4.89e-1624
anterior lateral plate mesoderm4.89e-1624
heart tube4.89e-1624
heart primordium4.89e-1624
cardiac mesoderm4.89e-1624
cardiogenic plate4.89e-1624
heart rudiment4.89e-1624
multi-cellular organism6.46e-16659
organism subdivision1.11e-15365
circulatory system1.51e-15113
unilaminar epithelium2.66e-15138
dermomyotome3.65e-1570
cardiovascular system7.60e-15110
vasculature3.54e-1479
vascular system3.54e-1479
neural tube3.61e-1457
neural rod3.61e-1457
future spinal cord3.61e-1457
neural keel3.61e-1457
embryonic structure1.46e-13605
developing anatomical structure1.46e-13605
embryo2.21e-13612
germ layer3.74e-13604
embryonic tissue3.74e-13604
presumptive structure3.74e-13604
epiblast (generic)3.74e-13604
neural plate6.67e-1386
presumptive neural plate6.67e-1386
multilaminar epithelium1.49e-1282
anterior neural tube2.73e-1242
regional part of forebrain4.26e-1241
forebrain4.26e-1241
future forebrain4.26e-1241
neurectoderm8.94e-1290
regional part of brain1.50e-1159
central nervous system3.12e-1182
somite6.98e-1183
paraxial mesoderm6.98e-1183
presomitic mesoderm6.98e-1183
presumptive segmental plate6.98e-1183
trunk paraxial mesoderm6.98e-1183
presumptive paraxial mesoderm6.98e-1183
telencephalon4.51e-1034
gray matter4.73e-1034
brain grey matter4.73e-1034
regional part of telencephalon6.65e-1033
regional part of nervous system7.41e-1094
nervous system7.41e-1094
cerebral hemisphere1.29e-0932
smooth muscle tissue1.29e-0915
brain1.80e-0969
future brain1.80e-0969
trunk mesenchyme4.97e-09143
aorta6.74e-0921

Disease
Ontology termp-valuen


Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs



JASPAR motifs

Motifs-log10(p-value)

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ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data

No analysis results for this cluster

Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data

This analysis result is provided for C0 - C305 clusters.

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