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Coexpression cluster:C247

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Full id: C247_pons_locus_medulla_spinal_paracentral_medial_occipital



Phase1 CAGE Peaks

  Short description
Hg19::chr10:105037601..105037624,+ p4@INA
Hg19::chr10:105037641..105037652,+ p16@INA
Hg19::chr10:121578268..121578279,+ p6@INPP5F
Hg19::chr10:79938937..79938973,+ p@chr10:79938937..79938973
+
Hg19::chr10:88718397..88718424,+ p3@SNCG
Hg19::chr12:107974646..107974657,+ p6@BTBD11
Hg19::chr12:5019095..5019105,+ p3@ENST00000542043
Hg19::chr12:5019108..5019119,+ p1@ENST00000542043
Hg19::chr12:6579808..6579815,- p2@VAMP1
Hg19::chr12:6579833..6579850,- p1@VAMP1
Hg19::chr13:25946216..25946235,+ p5@ATP8A2
Hg19::chr13:29646198..29646211,+ p5@MTUS2
Hg19::chr15:43803143..43803158,+ p2@MAP1A
Hg19::chr15:83378526..83378537,- p7@AP3B2
Hg19::chr16:29909708..29909739,- p@chr16:29909708..29909739
-
Hg19::chr16:31021916..31021920,- p3@STX1B
Hg19::chr16:67189374..67189388,- p@chr16:67189374..67189388
-
Hg19::chr17:7115127..7115145,- p@chr17:7115127..7115145
-
Hg19::chr18:5577640..5577652,- p14@EPB41L3
Hg19::chr18:5577655..5577670,- p17@EPB41L3
Hg19::chr18:70209396..70209407,- p@chr18:70209396..70209407
-
Hg19::chr1:202679535..202679553,- p2@SYT2
Hg19::chr1:202679556..202679619,- p1@SYT2
Hg19::chr1:202679624..202679645,- p3@SYT2
Hg19::chr1:7788387..7788404,+ p@chr1:7788387..7788404
+
Hg19::chr21:31312275..31312287,- p3@GRIK1
Hg19::chr21:31312328..31312347,- p2@GRIK1
Hg19::chr21:31312348..31312362,- p4@GRIK1
Hg19::chr21:34100341..34100356,- p5@SYNJ1
Hg19::chr21:47851604..47851613,+ p@chr21:47851604..47851613
+
Hg19::chr22:29876197..29876215,+ p1@NEFH
Hg19::chr22:29886248..29886264,+ p@chr22:29886248..29886264
+
Hg19::chr22:36635684..36635733,- p3@APOL2
Hg19::chr2:167005607..167005628,- p2@SCN1A
Hg19::chr2:196440724..196440739,+ p15@SLC39A10
Hg19::chr2:218873244..218873256,- p@chr2:218873244..218873256
-
Hg19::chr3:10857905..10857920,+ p1@SLC6A11
Hg19::chr3:56809534..56809564,- p9@ARHGEF3
Hg19::chr3:9745487..9745502,+ p2@CPNE9
Hg19::chr4:9783252..9783264,+ p1@DRD5
Hg19::chr5:142065223..142065256,- p6@FGF1
Hg19::chr5:161494723..161494732,+ p15@GABRG2
Hg19::chr6:143929375..143929393,+ p5@PHACTR2
Hg19::chr6:46293320..46293331,- p7@RCAN2
Hg19::chr6:72926685..72926703,+ p18@RIMS1
Hg19::chr7:100493699..100493740,- p3@ACHE
Hg19::chr7:100493744..100493759,- p4@ACHE
Hg19::chr7:126892303..126892311,- p4@GRM8
Hg19::chr7:31092185..31092196,+ p8@ADCYAP1R1
Hg19::chr7:38671067..38671081,- p4@AMPH
Hg19::chr7:752742..752786,- p5@PRKAR1B
Hg19::chr8:24771265..24771282,+ p1@NEFM
Hg19::chr8:24814118..24814133,- p1@NEFL


Enriched pathways on this co-expression cluster
Summary:


Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset


data

p.valueFDRnGenesnPathwayName
1.68021345890663e-050.002658937798719745272Neuroactive ligand-receptor interaction (KEGG):04080
3.47189991265201e-050.00439542528941744353Amyotrophic lateral sclerosis (ALS) (KEGG):05014
0.00010614362777180.01119815272992495401Transmembrane transport of small molecules (Reactome):REACT_15518
1.1460283977764e-077.25435975792461e-056197Synaptic Transmission (Reactome):REACT_13685
1.24432917686229e-060.000262553456317944318Botulinum neurotoxicity (Reactome):REACT_11184
8.907224977488e-070.000262553456317944462{VAMP2,63} (Static Module):NA



Enriched Gene Ontology terms on this co-expression cluster
Summary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner



link to source dataset


data

GO IDGO nameFDR corrected p-value
GO:0060053neurofilament cytoskeleton5.76452463698256e-09
GO:0005883neurofilament5.76452463698256e-09
GO:0044459plasma membrane part5.39356905720145e-07
GO:0030054cell junction5.39356905720145e-07
GO:0007268synaptic transmission6.66485268915385e-07
GO:0060052neurofilament cytoskeleton organization and biogenesis6.66485268915385e-07
GO:0051234establishment of localization1.10714024149718e-06
GO:0019226transmission of nerve impulse1.19931140373097e-06
GO:0051179localization2.90696985444759e-06
GO:0006810transport4.32552140686666e-06
GO:0007267cell-cell signaling4.32552140686666e-06
GO:0045104intermediate filament cytoskeleton organization and biogenesis1.20627154453211e-05
GO:0045103intermediate filament-based process1.39099149236477e-05
GO:0045110intermediate filament bundle assembly3.35002810673953e-05
GO:0005887integral to plasma membrane6.93337190746111e-05
GO:0005886plasma membrane6.93337190746111e-05
GO:0032501multicellular organismal process6.93337190746111e-05
GO:0031226intrinsic to plasma membrane6.93337190746111e-05
GO:0030424axon0.000123706784522979
GO:0045109intermediate filament organization0.0002341018288924
GO:0030135coated vesicle0.000267933225744423
GO:0016192vesicle-mediated transport0.000418809417604697
GO:0008088axon cargo transport0.000568172251123635
GO:0007275multicellular organismal development0.000568172251123635
GO:0005856cytoskeleton0.000698920488850127
GO:0007399nervous system development0.000902372266977661
GO:0008021synaptic vesicle0.000920014325211797
GO:0006836neurotransmitter transport0.00102372330387087
GO:0044425membrane part0.00102372330387087
GO:0043005neuron projection0.00108511220980445
GO:0005882intermediate filament0.00112117144533564
GO:0045111intermediate filament cytoskeleton0.00112117144533564
GO:0005200structural constituent of cytoskeleton0.0011391566271197
GO:0050804regulation of synaptic transmission0.00164217168261946
GO:0050877neurological system process0.00192181601951179
GO:0051969regulation of transmission of nerve impulse0.00192181601951179
GO:0048489synaptic vesicle transport0.00192181601951179
GO:0016044membrane organization and biogenesis0.00192883952669166
GO:0007270nerve-nerve synaptic transmission0.00203660384954451
GO:0022892substrate-specific transporter activity0.00205606845313884
GO:0015075ion transmembrane transporter activity0.00214531373740093
GO:0044430cytoskeletal part0.00214531373740093
GO:0030136clathrin-coated vesicle0.00214531373740093
GO:0042995cell projection0.00241759306773508
GO:0005230extracellular ligand-gated ion channel activity0.00301010924667021
GO:0031644regulation of neurological process0.00301895377699923
GO:0016023cytoplasmic membrane-bound vesicle0.00335209651229851
GO:0031988membrane-bound vesicle0.00346540054964109
GO:0007154cell communication0.00365036465590875
GO:0042165neurotransmitter binding0.00365036465590875
GO:0048856anatomical structure development0.00384311493099898
GO:0022891substrate-specific transmembrane transporter activity0.0040609291840681
GO:0003008system process0.00427800408195558
GO:0051649establishment of cellular localization0.00446159307994661
GO:0044456synapse part0.00450748968317031
GO:0022834ligand-gated channel activity0.0045637709753216
GO:0015276ligand-gated ion channel activity0.0045637709753216
GO:0016043cellular component organization and biogenesis0.0045637709753216
GO:0051641cellular localization0.00466686851699799
GO:0048731system development0.00486533136937667
GO:0032502developmental process0.00514003969057503
GO:0022857transmembrane transporter activity0.00526040200093909
GO:0031410cytoplasmic vesicle0.00531710148004648
GO:0005234extracellular-glutamate-gated ion channel activity0.00531710148004648
GO:0031982vesicle0.00553543088521537
GO:0045761regulation of adenylate cyclase activity0.00569918910307809
GO:0051339regulation of lyase activity0.00580484496877022
GO:0031279regulation of cyclase activity0.00580484496877022
GO:0005515protein binding0.00627792290736801
GO:0010324membrane invagination0.00627792290736801
GO:0006897endocytosis0.00627792290736801
GO:0060181female receptivity0.00655659780821679
GO:0045924regulation of female receptivity0.00655659780821679
GO:0033596TSC1-TSC2 complex0.00655659780821679
GO:0060180female mating behavior0.00655659780821679
GO:0050795regulation of behavior0.00655659780821679
GO:0032222regulation of synaptic transmission, cholinergic0.00655659780821679
GO:0032223negative regulation of synaptic transmission, cholinergic0.00655659780821679
GO:0008090retrograde axon cargo transport0.00655659780821679
GO:0001589dopamine D5 receptor activity0.00655659780821679
GO:0033693neurofilament bundle assembly0.00655659780821679
GO:0022836gated channel activity0.00783831692333591
GO:0046907intracellular transport0.00911087086016492
GO:0001507acetylcholine catabolic process in synaptic cleft0.0110593733437102
GO:0043237laminin-1 binding0.0110593733437102
GO:0003990acetylcholinesterase activity0.0110593733437102
GO:0033057reproductive behavior in a multicellular organism0.0110593733437102
GO:0019896axon transport of mitochondrion0.0110593733437102
GO:0031133regulation of axon diameter0.0110593733437102
GO:0050805negative regulation of synaptic transmission0.0110593733437102
GO:0006581acetylcholine catabolic process0.0110593733437102
GO:0001994norepinephrine-epinephrine vasoconstriction involved in regulation of systemic arterial blood pressure0.0110593733437102
GO:0030818negative regulation of cAMP biosynthetic process0.0110593733437102
GO:0030815negative regulation of cAMP metabolic process0.0110593733437102
GO:0051966regulation of synaptic transmission, glutamatergic0.0110593733437102
GO:0001588dopamine D1 receptor-like receptor activity0.0110593733437102
GO:0019932second-messenger-mediated signaling0.0111195460700301
GO:0005231excitatory extracellular ligand-gated ion channel activity0.0117553069406724
GO:0001505regulation of neurotransmitter levels0.0136251482154584
GO:0032940secretion by cell0.0142129165712312
GO:0016020membrane0.0142129165712312
GO:0007188G-protein signaling, coupled to cAMP nucleotide second messenger0.0142129165712312
GO:0043236laminin binding0.0142129165712312
GO:0008291acetylcholine metabolic process0.0142129165712312
GO:0030800negative regulation of cyclic nucleotide metabolic process0.0142129165712312
GO:0030346protein phosphatase 2B binding0.0142129165712312
GO:0030809negative regulation of nucleotide biosynthetic process0.0142129165712312
GO:0001992regulation of systemic arterial blood pressure by vasopressin0.0142129165712312
GO:0030803negative regulation of cyclic nucleotide biosynthetic process0.0142129165712312
GO:0051970negative regulation of transmission of nerve impulse0.0142129165712312
GO:0042220response to cocaine0.0142129165712312
GO:0014073response to tropane0.0142129165712312
GO:0019933cAMP-mediated signaling0.0147949686011322
GO:0005216ion channel activity0.0167255681365211
GO:0008066glutamate receptor activity0.0168727651275069
GO:0007010cytoskeleton organization and biogenesis0.0168727651275069
GO:0022838substrate specific channel activity0.0169913913045988
GO:0022803passive transmembrane transporter activity0.0171090747376351
GO:0015267channel activity0.0171090747376351
GO:0004104cholinesterase activity0.0171090747376351
GO:0035249synaptic transmission, glutamatergic0.0171090747376351
GO:0007191dopamine receptor, adenylate cyclase activating pathway0.0171090747376351
GO:0002076osteoblast development0.0171090747376351
GO:0050840extracellular matrix binding0.0171090747376351
GO:0043228non-membrane-bound organelle0.0177843020348907
GO:0043232intracellular non-membrane-bound organelle0.0177843020348907
GO:0008306associative learning0.0199303464299923
GO:0008035high-density lipoprotein binding0.0199303464299923
GO:0030817regulation of cAMP biosynthetic process0.0199303464299923
GO:0008089anterograde axon cargo transport0.0199303464299923
GO:0001993regulation of systemic arterial blood pressure by norepinephrine-epinephrine0.0199303464299923
GO:0004439phosphoinositide 5-phosphatase activity0.0199303464299923
GO:0042439ethanolamine and derivative metabolic process0.0199303464299923
GO:0046903secretion0.0220853584299826
GO:0007187G-protein signaling, coupled to cyclic nucleotide second messenger0.0220853584299826
GO:0031594neuromuscular junction0.0222341222275618
GO:0019098reproductive behavior0.0222341222275618
GO:0030802regulation of cyclic nucleotide biosynthetic process0.0222341222275618
GO:0030808regulation of nucleotide biosynthetic process0.0222341222275618
GO:0007617mating behavior0.0222341222275618
GO:0045980negative regulation of nucleotide metabolic process0.0222341222275618
GO:0048488synaptic vesicle endocytosis0.0222341222275618
GO:0030814regulation of cAMP metabolic process0.0222341222275618
GO:0019935cyclic-nucleotide-mediated signaling0.0224568120805291
GO:0022607cellular component assembly0.0245546746794124
GO:0031645negative regulation of neurological process0.0245546746794124
GO:0003084positive regulation of systemic arterial blood pressure0.0245546746794124
GO:0005332gamma-aminobutyric acid:sodium symporter activity0.0245546746794124
GO:0001963synaptic transmission, dopaminergic0.0245546746794124
GO:0030799regulation of cyclic nucleotide metabolic process0.0245546746794124
GO:0008503benzodiazepine receptor activity0.0245546746794124
GO:0009611response to wounding0.0254724008806108
GO:0006869lipid transport0.0257109825227417
GO:0004445inositol-polyphosphate 5-phosphatase activity0.0259850654483273
GO:0045776negative regulation of blood pressure0.0259850654483273
GO:0042135neurotransmitter catabolic process0.0259850654483273
GO:0050886endocrine process0.0259850654483273
GO:0001990regulation of systemic arterial blood pressure by hormone0.0259850654483273
GO:0015185L-gamma-aminobutyric acid transmembrane transporter activity0.0259850654483273
GO:0016079synaptic vesicle exocytosis0.0259850654483273
GO:0043279response to alkaloid0.0259850654483273
GO:0015277kainate selective glutamate receptor activity0.0259850654483273
GO:0046030inositol trisphosphate phosphatase activity0.0259850654483273
GO:0030594neurotransmitter receptor activity0.0260856382739532
GO:0045211postsynaptic membrane0.0286922244060811
GO:0031526brush border membrane0.0286922244060811
GO:0001540beta-amyloid binding0.0313005149388685
GO:0006140regulation of nucleotide metabolic process0.0313005149388685
GO:0045777positive regulation of blood pressure0.0313005149388685
GO:0045184establishment of protein localization0.0324215379354728
GO:0042402biogenic amine catabolic process0.033619649627795
GO:0014070response to organic cyclic substance0.033619649627795
GO:0031253cell projection membrane0.033619649627795
GO:0046873metal ion transmembrane transporter activity0.0348795867831052
GO:0042577lipid phosphatase activity0.0348795867831052
GO:0003044regulation of systemic arterial blood pressure mediated by a chemical signal0.0348795867831052
GO:0051705behavioral interaction between organisms0.0348795867831052
GO:0007271synaptic transmission, cholinergic0.0348795867831052
GO:0042734presynaptic membrane0.0348795867831052
GO:0005283sodium:amino acid symporter activity0.0348795867831052
GO:0007618mating0.0348795867831052
GO:0008104protein localization0.0348795867831052
GO:0007018microtubule-based movement0.0367252912294252
GO:0005416cation:amino acid symporter activity0.0367252912294252
GO:0030866cortical actin cytoskeleton organization and biogenesis0.0367252912294252
GO:0004999vasoactive intestinal polypeptide receptor activity0.0367252912294252
GO:0017156calcium ion-dependent exocytosis0.0367252912294252
GO:0006886intracellular protein transport0.0378025738124215
GO:0030865cortical cytoskeleton organization and biogenesis0.0383055765245929
GO:0042982amyloid precursor protein metabolic process0.0383055765245929
GO:0030552cAMP binding0.0383055765245929
GO:0042219amino acid derivative catabolic process0.0383055765245929
GO:0044464cell part0.0383055765245929
GO:0033036macromolecule localization0.0389750845834086
GO:0007194negative regulation of adenylate cyclase activity0.0401888459378791
GO:0051350negative regulation of lyase activity0.0401888459378791
GO:0031280negative regulation of cyclase activity0.0401888459378791
GO:0030705cytoskeleton-dependent intracellular transport0.0405545026518932
GO:0003073regulation of systemic arterial blood pressure0.0419964870842404
GO:0042310vasoconstriction0.0419964870842404
GO:0050714positive regulation of protein secretion0.0419964870842404
GO:0016021integral to membrane0.0432250967315281
GO:0030137COPI-coated vesicle0.0433088025382806
GO:0050435beta-amyloid metabolic process0.0433088025382806
GO:0007212dopamine receptor signaling pathway0.0433088025382806
GO:0019903protein phosphatase binding0.0433088025382806
GO:0007612learning0.0433088025382806
GO:0008289lipid binding0.0434730328223996
GO:0031224intrinsic to membrane0.0438426697017679
GO:0001518voltage-gated sodium channel complex0.0451813700461926
GO:0004012phospholipid-translocating ATPase activity0.0463462548699017
GO:0006171cAMP biosynthetic process0.0463462548699017
GO:0015247aminophospholipid transporter activity0.0463462548699017
GO:0035240dopamine binding0.0463462548699017
GO:0004952dopamine receptor activity0.0463462548699017
GO:0005518collagen binding0.0463462548699017
GO:0007601visual perception0.0469904287170701
GO:0050953sensory perception of light stimulus0.0469904287170701
GO:0006892post-Golgi vesicle-mediated transport0.0497964531035081
GO:0007215glutamate signaling pathway0.0497964531035081
GO:0051047positive regulation of secretion0.0497964531035081
GO:0016208AMP binding0.0497964531035081



Enriched sample ontology terms on this co-expression cluster
Summary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji



links to source dataset


uberon_data



Uber Anatomy
Ontology termp-valuen
neural tube1.29e-11856
neural rod1.29e-11856
future spinal cord1.29e-11856
neural keel1.29e-11856
regional part of nervous system1.12e-10753
regional part of brain1.12e-10753
central nervous system1.09e-9581
brain2.26e-9068
future brain2.26e-9068
regional part of forebrain1.97e-8641
forebrain1.97e-8641
anterior neural tube1.97e-8641
future forebrain1.97e-8641
nervous system2.00e-8589
neural plate1.37e-8282
presumptive neural plate1.37e-8282
brain grey matter7.87e-8034
gray matter7.87e-8034
telencephalon1.49e-7934
neurectoderm2.25e-7886
cerebral hemisphere8.60e-7332
regional part of telencephalon3.72e-7232
adult organism6.63e-67114
ecto-epithelium2.21e-63104
pre-chordal neural plate6.33e-6061
regional part of cerebral cortex2.99e-5522
structure with developmental contribution from neural crest2.67e-53132
cerebral cortex2.38e-4825
pallium2.38e-4825
neocortex2.67e-4820
ectoderm-derived structure7.83e-43171
ectoderm7.83e-43171
presumptive ectoderm7.83e-43171
neural nucleus2.30e-349
nucleus of brain2.30e-349
posterior neural tube2.57e-3115
chordal neural plate2.57e-3115
organ system subdivision1.03e-30223
tube1.19e-28192
basal ganglion1.79e-269
nuclear complex of neuraxis1.79e-269
aggregate regional part of brain1.79e-269
collection of basal ganglia1.79e-269
cerebral subcortex1.79e-269
telencephalic nucleus1.92e-267
gyrus2.00e-256
brainstem2.79e-256
segmental subdivision of hindbrain2.83e-2112
hindbrain2.83e-2112
presumptive hindbrain2.83e-2112
anatomical conduit4.05e-21240
segmental subdivision of nervous system1.56e-1913
corpus striatum3.59e-164
striatum3.59e-164
ventral part of telencephalon3.59e-164
future corpus striatum3.59e-164
anatomical cluster1.28e-15373
epithelium1.34e-15306
cell layer2.34e-15309
organ part4.39e-15218
parietal lobe2.99e-145
occipital lobe4.92e-145
pons7.52e-143
frontal cortex1.61e-133
medulla oblongata3.39e-133
myelencephalon3.39e-133
future myelencephalon3.39e-133
limbic system5.96e-135
spinal cord1.11e-123
dorsal region element1.11e-123
dorsum1.11e-123
caudate-putamen2.37e-123
dorsal striatum2.37e-123
regional part of metencephalon1.30e-119
metencephalon1.30e-119
future metencephalon1.30e-119
multi-tissue structure3.76e-11342
temporal lobe1.12e-096
locus ceruleus1.14e-092
brainstem nucleus1.14e-092
hindbrain nucleus1.14e-092
middle frontal gyrus1.74e-092
middle temporal gyrus2.06e-092
regional part of diencephalon3.32e-094
diencephalon4.77e-097
future diencephalon4.77e-097
organ4.95e-09503
Ammon's horn7.95e-092
lobe parts of cerebral cortex7.95e-092
hippocampal formation7.95e-092
limbic lobe7.95e-092
caudate nucleus8.27e-092
future caudate nucleus8.27e-092
meninx8.97e-092
membrane organ8.97e-092
meningeal cluster8.97e-092
dorsal plus ventral thalamus1.09e-082
globus pallidus1.09e-082
pallidum1.09e-082
thalamic complex1.09e-082


Overrepresented TFBS (DNA) motifs on this co-expression cluster
Summary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs

data

Novel motifs


JASPAR motifs
Motifs-log10(p-value)
MA0003.12.87653
MA0004.10.108892
MA0006.10.738384
MA0007.10.449238
MA0009.10.6783
MA0014.12.16239
MA0017.10.112104
MA0019.10.246097
MA0024.10.518847
MA0025.10.89723
MA0027.11.7145
MA0028.10.0903589
MA0029.10.547244
MA0030.10.179432
MA0031.10.142279
MA0038.10.19864
MA0040.10.19001
MA0041.10.123119
MA0042.10.244662
MA0043.10.241959
MA0046.10.234388
MA0048.11.32741
MA0050.10.0998136
MA0051.10.194436
MA0052.10.192408
MA0055.10.79366
MA0056.10
MA0057.11.74552
MA0058.10.283213
MA0059.10.137223
MA0060.10.275863
MA0061.10.0247827
MA0063.10
MA0066.10.440053
MA0067.10.486134
MA0068.10.0105678
MA0069.11.22138
MA0070.10.224361
MA0071.10.369122
MA0072.10.221396
MA0073.11.77299
MA0074.10.0521726
MA0076.10.0584678
MA0077.10.216348
MA0078.10.303473
MA0081.10.281018
MA0083.10.246867
MA0084.10.649313
MA0087.10.626892
MA0088.10.254996
MA0089.10
MA0090.10.345107
MA0091.10.0262924
MA0092.10.673702
MA0093.10.319285
MA0095.10
MA0098.10
MA0100.10.212741
MA0101.10.0820002
MA0103.10.28955
MA0105.10.0848989
MA0106.10.0685575
MA0107.10.0334817
MA0108.21.38051
MA0109.10
MA0111.10.374371
MA0113.10.937363
MA0114.10.0783923
MA0115.10.422889
MA0116.10.67097
MA0117.10.267775
MA0119.10.0425305
MA0122.10.286241
MA0124.10.38955
MA0125.10.324569
MA0130.10
MA0131.10.0988145
MA0132.10
MA0133.10
MA0135.10.26269
MA0136.10.056199
MA0139.11.47856
MA0140.10.0410132
MA0141.10.731538
MA0142.10.125391
MA0143.10.260247
MA0144.10.0647814
MA0145.12.52108
MA0146.12.83608
MA0147.10.309459
MA0148.10.128204
MA0149.10.626303
MA0062.20.183321
MA0035.20.363255
MA0039.21.69196
MA0138.21.56249
MA0002.20.0748425
MA0137.20.0961726
MA0104.20.415799
MA0047.20.0640143
MA0112.20.499188
MA0065.20.342333
MA0150.10.843733
MA0151.10
MA0152.10.165237
MA0153.10.311979
MA0154.11.73579
MA0155.11.46248
MA0156.10.00618015
MA0157.10.111638
MA0158.10
MA0159.10.311279
MA0160.10.32855
MA0161.10
MA0162.12.24398
MA0163.11.69277
MA0164.10.0800163
MA0080.20.00456908
MA0018.20.069086
MA0099.20.165565
MA0079.29.07449
MA0102.20.682839
MA0258.10.955778
MA0259.10.333871
MA0442.10


ENCODE TF ChIP-seq peak enrichment analysis
Summary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner



link to source dataset


data

(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)

TF#promotersEnrichmentp-valueq-value
MAFK#797584.09067670004980.0006880497428044440.005548118212535
SUZ12#2351254.727903859534240.004091611909144990.0195365910565169



Relative expression of the co-expression cluster
Summary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data