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FF:590-15F5

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Name:uterus, adult pregnant day19
Species:Mouse (Mus musculus)
Library ID:CNhs10497
Sample type:developmental
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samples)
Excluding candidate novel miRNAs(CAGE samples)
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissueuterus
dev stage19 days pregnant adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  SAMD00005325
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10497 CAGE DRX009128 DRR010002
Accession ID Mm9

Library idBAMCTSS
CNhs10497 DRZ001427 DRZ002810
Download raw sequence, BAM & CTSS
Mm9
FastaBAMCTSS
downloaddownloaddonwload
Mm10
BAMCTSS
downloaddonwload


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs10497

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.0747
1001 0.0216
1002 --0.00992
1003 0.0253
1004 0.243
1005 0.217
1006 0
1007 --0.0428
1008 0
1009 0.435
101 --0.0296
1010 0
1011 --0.0328
1012 0
1013 0.352
1014 --0.043
1015 --0.157
1016 --0.0319
1017 0
1018 0.0747
1019 0
102 0
1020 0
1021 0
1022 0
1023 0
1024 0.148
1025 0.086
1026 0.109
1027 --0.0147
1028 0
1029 0.108
103 0.523
1030 0
1031 0.447
1032 0.00456
1033 0
1034 0.0747
1035 0
1036 --0.168
1037 0
1038 0.00121
1039 --0.0765
104 0
1040 0.309
1041 0.194



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10497

Jaspar motif P-value
MA0002.2 0.0132
MA0003.1 0.0902
MA0004.1 0.955
MA0006.1 0.0817
MA0007.1 0.157
MA0009.1 0.275
MA0014.1 0.773
MA0017.1 0.247
MA0018.2 0.0622
MA0019.1 0.199
MA0024.1 4.64425e-5
MA0025.1 0.459
MA0027.1 0.00221
MA0028.1 0.0168
MA0029.1 0.731
MA0030.1 0.0256
MA0031.1 0.00889
MA0035.2 0.155
MA0038.1 0.75
MA0039.2 0.00174
MA0040.1 0.586
MA0041.1 0.677
MA0042.1 0.0586
MA0043.1 0.0172
MA0046.1 0.228
MA0047.2 0.984
MA0048.1 0.867
MA0050.1 4.3844e-7
MA0051.1 5.18446e-5
MA0052.1 0.0851
MA0055.1 0.3
MA0057.1 0.198
MA0058.1 0.582
MA0059.1 0.601
MA0060.1 1.18828e-9
MA0061.1 0.108
MA0062.2 0.0236
MA0065.2 0.896
MA0066.1 0.828
MA0067.1 0.733
MA0068.1 0.182
MA0069.1 0.925
MA0070.1 0.526
MA0071.1 0.499
MA0072.1 0.408
MA0073.1 0.533
MA0074.1 0.649
MA0076.1 0.00833
MA0077.1 0.00955
MA0078.1 0.0186
MA0079.2 0.00138
MA0080.2 5.95874e-7
MA0081.1 0.536
MA0083.1 1.94906e-9
MA0084.1 0.906
MA0087.1 0.987
MA0088.1 0.428
MA0090.1 0.00791
MA0091.1 0.719
MA0092.1 0.408
MA0093.1 0.903
MA0099.2 3.42072e-18
MA0100.1 0.0523
MA0101.1 0.283
MA0102.2 0.566
MA0103.1 0.933
MA0104.2 0.18
MA0105.1 0.762
MA0106.1 0.127
MA0107.1 0.0274
MA0108.2 0.00172
MA0111.1 0.565
MA0112.2 6.33075e-4
MA0113.1 0.624
MA0114.1 0.186
MA0115.1 0.343
MA0116.1 0.856
MA0117.1 0.662
MA0119.1 0.415
MA0122.1 0.756
MA0124.1 0.12
MA0125.1 0.189
MA0131.1 0.23
MA0135.1 0.935
MA0136.1 0.00177
MA0137.2 0.0132
MA0138.2 0.602
MA0139.1 0.436
MA0140.1 0.0404
MA0141.1 0.192
MA0142.1 0.456
MA0143.1 0.418
MA0144.1 8.79137e-5
MA0145.1 0.00277
MA0146.1 0.402
MA0147.1 0.153
MA0148.1 0.897
MA0149.1 0.539
MA0150.1 0.0592
MA0152.1 0.753
MA0153.1 0.812
MA0154.1 0.0248
MA0155.1 0.547
MA0156.1 2.49691e-4
MA0157.1 0.00487
MA0159.1 0.854
MA0160.1 0.232
MA0162.1 0.481
MA0163.1 0.788
MA0164.1 0.89
MA0258.1 0.0398
MA0259.1 0.14



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs10497

Novel motif P-value
1 0.937
10 0.581
100 0.312
101 0.642
102 0.311
103 0.486
104 0.28
105 0.16
106 7.33772e-4
107 0.00783
108 0.683
109 0.0512
11 0.902
110 0.458
111 0.657
112 0.0187
113 0.533
114 0.902
115 0.656
116 0.314
117 0.238
118 0.128
119 0.248
12 0.322
120 0.272
121 0.299
122 0.986
123 0.155
124 0.667
125 0.753
126 0.31
127 0.475
128 0.0272
129 0.224
13 0.151
130 0.711
131 0.195
132 0.272
133 0.426
134 0.744
135 0.456
136 0.219
137 0.304
138 0.027
139 0.1
14 0.479
140 0.0219
141 0.883
142 0.278
143 0.196
144 0.5
145 0.27
146 0.402
147 0.0336
148 0.047
149 0.00456
15 0.0616
150 0.152
151 0.652
152 0.0112
153 0.523
154 0.941
155 0.783
156 0.00245
157 0.668
158 0.495
159 0.807
160 0.272
161 0.262
162 0.759
163 0.94
164 0.22
165 0.146
166 0.0394
167 0.157
168 0.0874
169 0.0219
17 0.186
18 0.656
19 0.00893
2 0.0453
20 0.496
21 0.275
22 0.151
23 0.101
24 0.0219
25 0.308
26 0.136
27 0.688
28 0.984
29 0.777
3 0.998
30 0.376
31 0.964
32 0.0832
33 0.649
34 0.513
35 0.0566
36 0.097
37 0.0902
38 0.429
39 0.321
4 0.962
40 0.317
41 0.474
42 0.885
43 0.308
44 0.751
45 0.104
46 0.447
47 0.511
48 0.881
49 0.823
5 0.983
50 0.138
51 0.582
52 0.0372
53 0.127
54 0.503
55 0.607
56 0.67
57 0.628
58 0.986
59 0.135
6 0.364
60 0.0852
61 0.292
62 0.843
63 0.204
64 0.651
65 0.255
66 0.539
67 0.106
68 0.809
69 0.479
7 0.92
70 0.0144
71 0.723
72 0.443
73 0.0659
74 0.341
75 0.823
76 0.163
77 0.0443
78 0.106
79 0.895
8 0.345
80 0.979
81 0.63
82 0.201
83 0.112
84 0.816
85 0.21
86 0.752
87 0.196
88 0.964
89 0.388
9 0.26
90 0.0155
91 0.149
92 0.129
93 0.767
94 0.0875
95 0.453
96 0.259
97 0.426
98 0.694
99 0.324



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs10497


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000995 (uterus)
0006834 (uterus or analog)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0000317 (mouse pregnant tissue sample)
0000323 (mouse pregnant day 18)
0011389 (mouse uterus- adult pregnant day19 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)