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{{f5samples
 
{{f5samples
 
|DRA_sample_Accession=CAGE@DRS008959
 
|DRA_sample_Accession=CAGE@DRS008959
 +
|accession_numbers=CAGE;DRX009096;DRR009970;DRZ001395;DRZ002778
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000945,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010039,UBERON:0010317,UBERON:0001555,UBERON:0005409,UBERON:0001041
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
Line 42: Line 43:
 
|is_a=EFO:0002091;;FF:0011498
 
|is_a=EFO:0002091;;FF:0011498
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs11193
 
|library_ids=CNhs11193
 
|library_ids=CNhs11193
 
|name=stomach, neonate N03
 
|name=stomach, neonate N03
Line 85: Line 87:
 
|top_motifs=T:2.75791368134;ZNF148:2.50765824203;CDC5L:1.98721053622;HMX1:1.88520358952;SRF:1.68515392161;MYBL2:1.63499706629;TBP:1.5860773489;FOXA2:1.57163942277;FOS_FOS{B,L1}_JUN{B,D}:1.53806527377;TFCP2:1.53658881891;RXRA_VDR{dimer}:1.49289924751;NKX3-1:1.44202740725;SNAI1..3:1.367480718;TP53:1.35976846302;PAX1,9:1.33548138611;TOPORS:1.31888266437;NKX3-2:1.30966595228;FOX{F1,F2,J1}:1.30422463973;PPARG:1.2616319153;EBF1:1.25745315168;IKZF2:1.20857297994;DBP:1.10629296588;FOX{I1,J2}:1.09292633478;TBX4,5:1.02132939787;ZIC1..3:1.01082450805;FOXP1:0.986083090283;NKX2-2,8:0.919483824454;NKX2-1,4:0.91900817206;TEAD1:0.9167554147;HNF1A:0.869509095657;FOX{D1,D2}:0.845600241823;XCPE1{core}:0.804379082917;SP1:0.738422233654;NFE2L2:0.737683862213;GCM1,2:0.718417516888;HAND1,2:0.682536452513;NR3C1:0.654180641995;FOSL2:0.652174568297;AR:0.651725190221;TLX1..3_NFIC{dimer}:0.645795226756;RBPJ:0.624045484042;ZNF238:0.620270399868;GTF2I:0.612583227027;TEF:0.602702813235;NFIX:0.60246788801;ZEB1:0.575790364508;BACH2:0.575130399155;NFE2:0.565458320182;HMGA1,2:0.562386085112;FOXL1:0.540655982153;MYOD1:0.540006392526;ZNF423:0.494523830765;HOX{A5,B5}:0.492187209805;TFAP4:0.482786526991;PAX5:0.481749306115;MAZ:0.480893917784;EN1,2:0.469753389445;HNF4A_NR2F1,2:0.463662808109;LEF1_TCF7_TCF7L1,2:0.443182399924;ADNP_IRX_SIX_ZHX:0.437851626899;POU5F1:0.433271277551;ZNF384:0.421745716447;GATA6:0.414032962338;GFI1B:0.405668127557;IKZF1:0.404386333699;GATA4:0.393708908673;ONECUT1,2:0.373755356174;CEBPA,B_DDIT3:0.361567539742;FOXM1:0.35479567228;TLX2:0.345949741085;STAT1,3:0.34036343497;POU6F1:0.330162020853;PITX1..3:0.320483353128;IRF7:0.299575945776;GZF1:0.297039037151;CRX:0.267866351916;GFI1:0.262754449066;NKX6-1,2:0.262635825313;E2F1..5:0.253365100694;TAL1_TCF{3,4,12}:0.23580321941;CDX1,2,4:0.235576916018;STAT2,4,6:0.216071633918;KLF4:0.212740345855;SMAD1..7,9:0.204668120657;EVI1:0.194647875469;BPTF:0.173141521988;NANOG:0.156261716187;HLF:0.122121122647;GTF2A1,2:0.120581345394;RREB1:0.0976634517931;GLI1..3:0.0964984752789;PAX8:0.0809249136472;TFAP2{A,C}:0.0674765205322;LMO2:0.054703360314;PAX4:0.0379653126934;FOXN1:0.0016346557002;TFAP2B:-0.030825720207;NKX2-3_NKX2-5:-0.0372349172053;MYFfamily:-0.0431048773643;ATF6:-0.0432956749747;PATZ1:-0.0453933421739;HOX{A4,D4}:-0.0489680173757;ESRRA:-0.0492081056561;HIC1:-0.0561301429339;NR6A1:-0.0624899373465;REST:-0.0681187565564;UFEwm:-0.0729674114244;PRDM1:-0.0770971083675;NFATC1..3:-0.0933686029511;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.11207603683;MAFB:-0.132690846013;IRF1,2:-0.152389576566;TFDP1:-0.161386057108;AIRE:-0.168700866744;BREu{core}:-0.186790675368;ESR1:-0.188668776374;NFY{A,B,C}:-0.205470147887;ETS1,2:-0.239300705159;SOX5:-0.243866612636;HIF1A:-0.24731997541;ATF2:-0.248521756116;STAT5{A,B}:-0.250439909777;TGIF1:-0.251877069449;EGR1..3:-0.273565003264;HSF1,2:-0.284137849787;ELF1,2,4:-0.298258741627;MED-1{core}:-0.307546383108;VSX1,2:-0.310162329361;DMAP1_NCOR{1,2}_SMARC:-0.310353420229;MZF1:-0.334350268727;POU3F1..4:-0.340875141638;ALX4:-0.351077896891;SPZ1:-0.37859384697;NFIL3:-0.401512880355;MTE{core}:-0.401588173394;LHX3,4:-0.402265938158;EP300:-0.434352338804;HOXA9_MEIS1:-0.451745517952;MTF1:-0.452369920183;FOXD3:-0.456770023518;CUX2:-0.456970473256;RFX2..5_RFXANK_RFXAP:-0.479067003605;NR5A1,2:-0.482524791829;POU1F1:-0.485211281337;ZBTB16:-0.490321958787;MEF2{A,B,C,D}:-0.499016096888;FOXO1,3,4:-0.513632913835;CREB1:-0.544476516274;SOX17:-0.559811070928;PBX1:-0.608321820124;PRRX1,2:-0.608817001494;ARID5B:-0.615521093231;HBP1_HMGB_SSRP1_UBTF:-0.630882881395;RFX1:-0.636188388788;ZNF143:-0.644691008184;NFKB1_REL_RELA:-0.671436513385;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.689446348528;MYB:-0.694276506612;POU2F1..3:-0.706052839106;ZFP161:-0.72315025725;PAX6:-0.725930692772;SOX2:-0.729922373755;SPI1:-0.733639753124;ZBTB6:-0.73975939663;AHR_ARNT_ARNT2:-0.740723538465;SOX{8,9,10}:-0.741501701959;SPIB:-0.77975668963;RUNX1..3:-0.782482155989;OCT4_SOX2{dimer}:-0.788992100524;NR1H4:-0.807281150583;JUN:-0.81919593595;ELK1,4_GABP{A,B1}:-0.823745401805;NHLH1,2:-0.826426301923;PDX1:-0.836197252057;NRF1:-0.894415546823;bHLH_family:-0.918752673198;ATF5_CREB3:-0.927181806196;SREBF1,2:-0.932555114677;FOXQ1:-1.10113119794;ATF4:-1.10585991264;RXR{A,B,G}:-1.13302249201;NANOG{mouse}:-1.14422401099;YY1:-1.34858455241;NFE2L1:-1.35050403053;RORA:-1.40099201871;PAX2:-1.47300158392;FOXP3:-1.47412128211;HES1:-1.49755150554;ALX1:-1.57400369274
 
|top_motifs=T:2.75791368134;ZNF148:2.50765824203;CDC5L:1.98721053622;HMX1:1.88520358952;SRF:1.68515392161;MYBL2:1.63499706629;TBP:1.5860773489;FOXA2:1.57163942277;FOS_FOS{B,L1}_JUN{B,D}:1.53806527377;TFCP2:1.53658881891;RXRA_VDR{dimer}:1.49289924751;NKX3-1:1.44202740725;SNAI1..3:1.367480718;TP53:1.35976846302;PAX1,9:1.33548138611;TOPORS:1.31888266437;NKX3-2:1.30966595228;FOX{F1,F2,J1}:1.30422463973;PPARG:1.2616319153;EBF1:1.25745315168;IKZF2:1.20857297994;DBP:1.10629296588;FOX{I1,J2}:1.09292633478;TBX4,5:1.02132939787;ZIC1..3:1.01082450805;FOXP1:0.986083090283;NKX2-2,8:0.919483824454;NKX2-1,4:0.91900817206;TEAD1:0.9167554147;HNF1A:0.869509095657;FOX{D1,D2}:0.845600241823;XCPE1{core}:0.804379082917;SP1:0.738422233654;NFE2L2:0.737683862213;GCM1,2:0.718417516888;HAND1,2:0.682536452513;NR3C1:0.654180641995;FOSL2:0.652174568297;AR:0.651725190221;TLX1..3_NFIC{dimer}:0.645795226756;RBPJ:0.624045484042;ZNF238:0.620270399868;GTF2I:0.612583227027;TEF:0.602702813235;NFIX:0.60246788801;ZEB1:0.575790364508;BACH2:0.575130399155;NFE2:0.565458320182;HMGA1,2:0.562386085112;FOXL1:0.540655982153;MYOD1:0.540006392526;ZNF423:0.494523830765;HOX{A5,B5}:0.492187209805;TFAP4:0.482786526991;PAX5:0.481749306115;MAZ:0.480893917784;EN1,2:0.469753389445;HNF4A_NR2F1,2:0.463662808109;LEF1_TCF7_TCF7L1,2:0.443182399924;ADNP_IRX_SIX_ZHX:0.437851626899;POU5F1:0.433271277551;ZNF384:0.421745716447;GATA6:0.414032962338;GFI1B:0.405668127557;IKZF1:0.404386333699;GATA4:0.393708908673;ONECUT1,2:0.373755356174;CEBPA,B_DDIT3:0.361567539742;FOXM1:0.35479567228;TLX2:0.345949741085;STAT1,3:0.34036343497;POU6F1:0.330162020853;PITX1..3:0.320483353128;IRF7:0.299575945776;GZF1:0.297039037151;CRX:0.267866351916;GFI1:0.262754449066;NKX6-1,2:0.262635825313;E2F1..5:0.253365100694;TAL1_TCF{3,4,12}:0.23580321941;CDX1,2,4:0.235576916018;STAT2,4,6:0.216071633918;KLF4:0.212740345855;SMAD1..7,9:0.204668120657;EVI1:0.194647875469;BPTF:0.173141521988;NANOG:0.156261716187;HLF:0.122121122647;GTF2A1,2:0.120581345394;RREB1:0.0976634517931;GLI1..3:0.0964984752789;PAX8:0.0809249136472;TFAP2{A,C}:0.0674765205322;LMO2:0.054703360314;PAX4:0.0379653126934;FOXN1:0.0016346557002;TFAP2B:-0.030825720207;NKX2-3_NKX2-5:-0.0372349172053;MYFfamily:-0.0431048773643;ATF6:-0.0432956749747;PATZ1:-0.0453933421739;HOX{A4,D4}:-0.0489680173757;ESRRA:-0.0492081056561;HIC1:-0.0561301429339;NR6A1:-0.0624899373465;REST:-0.0681187565564;UFEwm:-0.0729674114244;PRDM1:-0.0770971083675;NFATC1..3:-0.0933686029511;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.11207603683;MAFB:-0.132690846013;IRF1,2:-0.152389576566;TFDP1:-0.161386057108;AIRE:-0.168700866744;BREu{core}:-0.186790675368;ESR1:-0.188668776374;NFY{A,B,C}:-0.205470147887;ETS1,2:-0.239300705159;SOX5:-0.243866612636;HIF1A:-0.24731997541;ATF2:-0.248521756116;STAT5{A,B}:-0.250439909777;TGIF1:-0.251877069449;EGR1..3:-0.273565003264;HSF1,2:-0.284137849787;ELF1,2,4:-0.298258741627;MED-1{core}:-0.307546383108;VSX1,2:-0.310162329361;DMAP1_NCOR{1,2}_SMARC:-0.310353420229;MZF1:-0.334350268727;POU3F1..4:-0.340875141638;ALX4:-0.351077896891;SPZ1:-0.37859384697;NFIL3:-0.401512880355;MTE{core}:-0.401588173394;LHX3,4:-0.402265938158;EP300:-0.434352338804;HOXA9_MEIS1:-0.451745517952;MTF1:-0.452369920183;FOXD3:-0.456770023518;CUX2:-0.456970473256;RFX2..5_RFXANK_RFXAP:-0.479067003605;NR5A1,2:-0.482524791829;POU1F1:-0.485211281337;ZBTB16:-0.490321958787;MEF2{A,B,C,D}:-0.499016096888;FOXO1,3,4:-0.513632913835;CREB1:-0.544476516274;SOX17:-0.559811070928;PBX1:-0.608321820124;PRRX1,2:-0.608817001494;ARID5B:-0.615521093231;HBP1_HMGB_SSRP1_UBTF:-0.630882881395;RFX1:-0.636188388788;ZNF143:-0.644691008184;NFKB1_REL_RELA:-0.671436513385;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.689446348528;MYB:-0.694276506612;POU2F1..3:-0.706052839106;ZFP161:-0.72315025725;PAX6:-0.725930692772;SOX2:-0.729922373755;SPI1:-0.733639753124;ZBTB6:-0.73975939663;AHR_ARNT_ARNT2:-0.740723538465;SOX{8,9,10}:-0.741501701959;SPIB:-0.77975668963;RUNX1..3:-0.782482155989;OCT4_SOX2{dimer}:-0.788992100524;NR1H4:-0.807281150583;JUN:-0.81919593595;ELK1,4_GABP{A,B1}:-0.823745401805;NHLH1,2:-0.826426301923;PDX1:-0.836197252057;NRF1:-0.894415546823;bHLH_family:-0.918752673198;ATF5_CREB3:-0.927181806196;SREBF1,2:-0.932555114677;FOXQ1:-1.10113119794;ATF4:-1.10585991264;RXR{A,B,G}:-1.13302249201;NANOG{mouse}:-1.14422401099;YY1:-1.34858455241;NFE2L1:-1.35050403053;RORA:-1.40099201871;PAX2:-1.47300158392;FOXP3:-1.47412128211;HES1:-1.49755150554;ALX1:-1.57400369274
 
|xref=
 
|xref=
}} {{DRAAccessionNumbers
 
|DRA_sample_Accession=CAGE@DRS008959
 
|accession_numbers=DRX009096;DRR009970;DRZ001395;DRZ002778;CAGE
 
|library_id=CNhs11193
 
 
}}
 
}}

Revision as of 05:56, 17 October 2013


Name:stomach, neonate N03
Species:Mouse (Mus musculus)
Library ID:CNhs11193
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuestomach
dev stage3 days neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  DRS008959
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11193 CAGE DRX009096 DRR009970
Accession ID Mm9

Library idBAMCTSS
CNhs11193 DRZ001395 DRZ002778
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11193

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0.234
1001 0.14
1002 0.444
1003 0.174
1004 0
1005 0.0549
1006 0.00158
1007 --0.00206
1008 0
1009 0.267
101 --0.0069
1010 0
1011 0
1012 0
1013 0.16
1014 0.432
1015 --0.00299
1016 0.0354
1017 0.371
1018 0.289
1019 0.104
102 0
1020 0
1021 0.00626
1022 0.148
1023 0
1024 0.0577
1025 0.797
1026 0
1027 0.0427
1028 0
1029 0.401
103 0.318
1030 0
1031 0.338
1032 0.169
1033 0.0238
1034 0.296
1035 0.0285
1036 0.0214
1037 0
1038 0.0588
1039 0.0124
104 0
1040 0.162
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11193

Jaspar motif P-value
MA0002.2 0.13
MA0003.1 0.266
MA0004.1 0.158
MA0006.1 0.0422
MA0007.1 0.682
MA0009.1 0.158
MA0014.1 0.967
MA0017.1 0.339
MA0018.2 9.35163e-6
MA0019.1 0.301
MA0024.1 0.449
MA0025.1 0.00658
MA0027.1 0.0592
MA0028.1 1.83924e-4
MA0029.1 0.781
MA0030.1 0.197
MA0031.1 0.935
MA0035.2 0.86
MA0038.1 0.863
MA0039.2 0.00219
MA0040.1 0.604
MA0041.1 0.191
MA0042.1 0.287
MA0043.1 2.68106e-4
MA0046.1 1.17261e-16
MA0047.2 1.07733e-6
MA0048.1 0.747
MA0050.1 0.212
MA0051.1 0.0227
MA0052.1 0.00912
MA0055.1 0.409
MA0057.1 0.0433
MA0058.1 0.0121
MA0059.1 0.142
MA0060.1 0.0263
MA0061.1 0.727
MA0062.2 4.93369e-11
MA0065.2 0.0821
MA0066.1 0.171
MA0067.1 0.157
MA0068.1 0.0398
MA0069.1 0.0234
MA0070.1 0.872
MA0071.1 0.0482
MA0072.1 0.25
MA0073.1 0.653
MA0074.1 0.779
MA0076.1 9.41325e-6
MA0077.1 0.182
MA0078.1 0.284
MA0079.2 0.146
MA0080.2 7.40013e-4
MA0081.1 6.50169e-5
MA0083.1 7.38539e-8
MA0084.1 0.91
MA0087.1 0.104
MA0088.1 0.391
MA0090.1 0.0125
MA0091.1 0.439
MA0092.1 0.0555
MA0093.1 0.0894
MA0099.2 7.86986e-6
MA0100.1 0.00385
MA0101.1 0.157
MA0102.2 0.812
MA0103.1 2.06468e-4
MA0104.2 0.0513
MA0105.1 0.426
MA0106.1 0.0165
MA0107.1 0.336
MA0108.2 9.1602e-7
MA0111.1 0.857
MA0112.2 0.0053
MA0113.1 0.525
MA0114.1 0.0184
MA0115.1 0.413
MA0116.1 0.227
MA0117.1 0.252
MA0119.1 0.0744
MA0122.1 0.0407
MA0124.1 0.745
MA0125.1 0.47
MA0131.1 0.288
MA0135.1 0.554
MA0136.1 1.74657e-7
MA0137.2 0.82
MA0138.2 0.502
MA0139.1 0.376
MA0140.1 0.712
MA0141.1 0.195
MA0142.1 0.125
MA0143.1 0.69
MA0144.1 0.242
MA0145.1 0.00513
MA0146.1 0.389
MA0147.1 0.0313
MA0148.1 7.88988e-8
MA0149.1 0.767
MA0150.1 0.687
MA0152.1 0.155
MA0153.1 2.97328e-11
MA0154.1 0.0427
MA0155.1 0.384
MA0156.1 6.96984e-6
MA0157.1 0.742
MA0159.1 0.892
MA0160.1 0.0407
MA0162.1 0.276
MA0163.1 0.075
MA0164.1 0.978
MA0258.1 0.423
MA0259.1 0.0861



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11193

Novel motif P-value
1 0.478
10 0.539
100 0.768
101 0.907
102 0.692
103 0.0568
104 0.929
105 0.867
106 0.00269
107 0.0074
108 0.674
109 0.202
11 0.876
110 0.513
111 0.596
112 0.278
113 0.473
114 0.448
115 0.891
116 0.449
117 0.519
118 0.233
119 0.156
12 0.614
120 0.739
121 0.543
122 0.207
123 0.429
124 0.745
125 0.819
126 0.114
127 0.737
128 0.00861
129 0.906
13 0.027
130 0.329
131 0.813
132 0.343
133 0.0555
134 0.788
135 0.894
136 0.783
137 0.292
138 0.00724
139 0.372
14 0.756
140 0.0354
141 0.823
142 0.32
143 0.0944
144 0.247
145 0.118
146 0.135
147 0.488
148 0.892
149 0.221
15 0.875
150 0.427
151 0.71
152 0.031
153 0.607
154 0.856
155 0.89
156 5.72562e-8
157 0.311
158 0.464
159 0.0806
160 0.0825
161 0.492
162 0.268
163 0.8
164 0.481
165 0.605
166 0.11
167 0.448
168 0.266
169 0.00854
17 0.0336
18 0.88
19 0.0255
2 0.174
20 0.266
21 0.924
22 0.241
23 0.283
24 0.475
25 0.373
26 0.00647
27 0.763
28 0.863
29 0.912
3 0.616
30 0.149
31 0.683
32 0.0357
33 0.989
34 0.97
35 0.445
36 0.309
37 0.142
38 0.787
39 0.0959
4 0.0683
40 0.869
41 0.213
42 0.58
43 0.169
44 0.777
45 0.355
46 0.315
47 0.562
48 0.885
49 0.342
5 0.288
50 0.574
51 0.411
52 0.0199
53 0.326
54 0.223
55 0.694
56 0.369
57 0.503
58 0.718
59 0.441
6 0.193
60 0.036
61 0.303
62 0.949
63 0.277
64 0.982
65 0.668
66 0.624
67 0.843
68 0.146
69 0.428
7 0.219
70 0.628
71 0.0742
72 0.928
73 0.203
74 0.297
75 0.87
76 0.102
77 0.00446
78 0.279
79 0.877
8 0.586
80 0.0592
81 0.874
82 0.353
83 0.527
84 0.941
85 0.23
86 0.583
87 0.354
88 0.151
89 0.381
9 0.181
90 0.909
91 0.528
92 0.19
93 0.399
94 0.533
95 0.673
96 0.7
97 0.243
98 0.934
99 0.0507



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11193


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000945 (stomach)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010039 (food storage organ)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)
0001041 (foregut)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000311 (mouse neonate N3 sample)
0011498 (mouse stomach, neonate N03 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)