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FF:1555-45E2

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Name:pancreas, neonate N25
Species:Mouse (Mus musculus)
Library ID:CNhs11094
Sample type:developmental
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainC57BL/6J
tissuepancreas
dev stage25 days neonate
sexmixture
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

Accession numbers
MethodSample accession id
CAGE  DRS008927
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11094 CAGE DRX009064 DRR009938
Accession ID Mm9

Library idBAMCTSS
CNhs11094 DRZ001363 DRZ002746
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs11094

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0
10 0
100 0
1000 0
1001 --0.00135
1002 --0.116
1003 --0.175
1004 0
1005 --0.0389
1006 0
1007 --0.0703
1008 0
1009 --0.0614
101 --0.0153
1010 0
1011 --0.131
1012 0
1013 0.663
1014 --0.0874
1015 --0.153
1016 --0.379
1017 0
1018 0
1019 0
102 0
1020 0
1021 0
1022 0.745
1023 0
1024 0
1025 0
1026 0
1027 0
1028 0
1029 --0.176
103 --0.0576
1030 0
1031 --0.308
1032 --0.028
1033 --0.0665
1034 0.965
1035 0
1036 --0.164
1037 0
1038 --0.00847
1039 0.276
104 0
1040 --0.121
1041 0.493



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11094

Jaspar motif P-value
MA0002.2 0.293
MA0003.1 0.481
MA0004.1 0.179
MA0006.1 0.19
MA0007.1 0.371
MA0009.1 0.964
MA0014.1 0.326
MA0017.1 0.12
MA0018.2 0.00996
MA0019.1 0.752
MA0024.1 0.00496
MA0025.1 0.606
MA0027.1 0.837
MA0028.1 0.685
MA0029.1 0.693
MA0030.1 0.889
MA0031.1 0.663
MA0035.2 0.0239
MA0038.1 0.764
MA0039.2 0.0861
MA0040.1 0.368
MA0041.1 0.108
MA0042.1 0.61
MA0043.1 0.0147
MA0046.1 1.80619e-8
MA0047.2 0.00306
MA0048.1 0.594
MA0050.1 0.802
MA0051.1 0.689
MA0052.1 0.00288
MA0055.1 0.449
MA0057.1 0.145
MA0058.1 0.167
MA0059.1 0.00433
MA0060.1 0.00483
MA0061.1 0.982
MA0062.2 0.913
MA0065.2 0.0358
MA0066.1 0.707
MA0067.1 0.0999
MA0068.1 0.292
MA0069.1 0.519
MA0070.1 0.812
MA0071.1 0.173
MA0072.1 0.235
MA0073.1 0.349
MA0074.1 0.0926
MA0076.1 0.901
MA0077.1 0.579
MA0078.1 0.474
MA0079.2 0.958
MA0080.2 0.77
MA0081.1 0.758
MA0083.1 0.00603
MA0084.1 0.484
MA0087.1 0.014
MA0088.1 0.0127
MA0090.1 0.144
MA0091.1 0.00343
MA0092.1 0.212
MA0093.1 0.196
MA0099.2 0.934
MA0100.1 0.0636
MA0101.1 0.762
MA0102.2 0.0847
MA0103.1 5.97391e-6
MA0104.2 0.206
MA0105.1 0.67
MA0106.1 0.231
MA0107.1 0.312
MA0108.2 0.0271
MA0111.1 0.94
MA0112.2 1.87835e-4
MA0113.1 0.844
MA0114.1 0.231
MA0115.1 0.749
MA0116.1 0.625
MA0117.1 0.254
MA0119.1 0.168
MA0122.1 0.86
MA0124.1 0.254
MA0125.1 0.274
MA0131.1 0.931
MA0135.1 0.202
MA0136.1 0.348
MA0137.2 7.13918e-4
MA0138.2 0.965
MA0139.1 0.494
MA0140.1 0.0127
MA0141.1 0.0097
MA0142.1 0.805
MA0143.1 0.808
MA0144.1 0.00658
MA0145.1 0.022
MA0146.1 0.195
MA0147.1 0.0733
MA0148.1 3.73794e-5
MA0149.1 0.00272
MA0150.1 0.145
MA0152.1 0.809
MA0153.1 0.00129
MA0154.1 0.0246
MA0155.1 0.681
MA0156.1 0.943
MA0157.1 0.335
MA0159.1 0.0698
MA0160.1 0.0504
MA0162.1 0.38
MA0163.1 0.00606
MA0164.1 0.228
MA0258.1 0.0221
MA0259.1 0.763



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11094

Novel motif P-value
1 0.0386
10 0.152
100 0.422
101 0.934
102 0.867
103 0.055
104 0.202
105 0.802
106 0.0324
107 0.215
108 0.914
109 0.0276
11 0.12
110 0.0809
111 0.0137
112 0.0497
113 0.399
114 0.195
115 0.78
116 0.204
117 0.111
118 0.803
119 0.0527
12 0.803
120 0.462
121 0.584
122 0.188
123 0.903
124 0.396
125 0.177
126 0.0288
127 0.0779
128 0.0572
129 0.29
13 0.0225
130 0.736
131 0.808
132 0.806
133 0.131
134 0.535
135 0.746
136 0.34
137 0.26
138 0.168
139 0.236
14 0.747
140 0.016
141 0.63
142 0.939
143 0.319
144 0.12
145 0.0645
146 0.351
147 0.657
148 0.114
149 0.348
15 0.307
150 0.351
151 0.368
152 0.0237
153 0.946
154 0.999
155 0.274
156 0.0838
157 0.189
158 0.186
159 0.481
160 0.507
161 0.392
162 0.674
163 0.911
164 0.0627
165 0.121
166 0.111
167 0.448
168 0.881
169 0.0061
17 0.0414
18 0.479
19 0.0858
2 0.661
20 0.961
21 0.967
22 0.444
23 0.406
24 0.0853
25 0.74
26 0.0113
27 0.524
28 0.654
29 0.133
3 0.293
30 0.983
31 0.38
32 0.131
33 0.592
34 0.956
35 0.185
36 0.176
37 0.0512
38 0.466
39 0.49
4 0.224
40 0.56
41 0.606
42 0.199
43 0.326
44 0.311
45 0.725
46 0.0641
47 0.339
48 0.237
49 0.185
5 0.482
50 0.697
51 0.474
52 0.461
53 0.939
54 0.706
55 0.437
56 0.37
57 0.512
58 0.34
59 0.0587
6 0.826
60 0.16
61 0.134
62 0.221
63 0.0746
64 0.587
65 0.102
66 0.324
67 0.784
68 0.951
69 0.519
7 0.157
70 0.0284
71 0.00912
72 0.26
73 0.0261
74 0.878
75 0.094
76 0.763
77 0.0434
78 0.259
79 0.0394
8 0.0828
80 0.797
81 0.562
82 0.315
83 0.63
84 0.831
85 0.0131
86 0.0443
87 0.0604
88 0.974
89 0.273
9 0.857
90 0.0933
91 0.263
92 0.0514
93 0.291
94 0.805
95 0.29
96 0.306
97 0.0119
98 0.926
99 0.51



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11094


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000309 (mouse neonate N25 sample)
0011256 (mouse pancreas- neonate N25 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

FF:0000294 (mouse embryonic day 11 sample)