FF:688-20B8: Difference between revisions

Latest revision as of 19:19, 4 June 2020

Name:	intestine, neonate N06
Species:	Mouse (Mus musculus)
Library ID:	CNhs11102
Sample type:	developmental
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	C57BL/6J
tissue	intestine
dev stage	6 days neonate
sex	mixture
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005089

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11102		CAGE		DRX008998		DRR009872

Accession ID Mm9

Library id		BAM		CTSS
CNhs11102		DRZ001297		DRZ002680

Accession ID Mm10

Library id		BAM		CTSS
CNhs11102		DRZ012647		DRZ014030

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs11102

0	0
1	0
10	0
100	0
1000	0.103
1001	0.0397
1002	0.271
1003	0.00838
1004	0
1005	0.302
1006	0.0644
1007	0.0133
1008	0.353
1009	0.12
101	-0.077
1010	0.0974
1011	0
1012	0
1013	0.224
1014	0.177
1015	-0.126
1016	-0.0806
1017	0
1018	0.399
1019	0
102	0
1020	0
1021	0.0487
1022	0.0251
1023	0
1024	0.0974
1025	0.592
1026	0
1027	0
1028	0
1029	0.515
103	0.149
1030	0
1031	0.0721
1032	0.292
1033	-0.0665
1034	0.0974
1035	0.177
1036	-0.00598
1037	0
1038	0.0926
1039	0.00248
104	0.0974
1040	-0.0865
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11102

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.394
MA0003.1	MA0003.1	0.126
MA0004.1	MA0004.1	0.632
MA0006.1	MA0006.1	0.0483
MA0007.1	MA0007.1	0.532
MA0009.1	MA0009.1	0.636
MA0014.1	MA0014.1	0.623
MA0017.1	MA0017.1	7.72128e-26
MA0018.2	MA0018.2	1.8503e-4
MA0019.1	MA0019.1	0.341
MA0024.1	MA0024.1	0.0291
MA0025.1	MA0025.1	0.0453
MA0027.1	MA0027.1	0.15
MA0028.1	MA0028.1	0.131
MA0029.1	MA0029.1	0.892
MA0030.1	MA0030.1	0.631
MA0031.1	MA0031.1	0.234
MA0035.2	MA0035.2	1.5562e-5
MA0038.1	MA0038.1	0.536
MA0039.2	MA0039.2	8.60781e-4
MA0040.1	MA0040.1	0.493
MA0041.1	MA0041.1	0.272
MA0042.1	MA0042.1	0.801
MA0043.1	MA0043.1	5.05974e-4
MA0046.1	MA0046.1	6.68208e-73
MA0047.2	MA0047.2	1.55354e-4
MA0048.1	MA0048.1	0.367
MA0050.1	MA0050.1	3.62317e-5
MA0051.1	MA0051.1	0.00278
MA0052.1	MA0052.1	3.08707e-6
MA0055.1	MA0055.1	0.214
MA0057.1	MA0057.1	0.126
MA0058.1	MA0058.1	0.411
MA0059.1	MA0059.1	0.644
MA0060.1	MA0060.1	0.00322
MA0061.1	MA0061.1	0.516
MA0062.2	MA0062.2	0.0289
MA0065.2	MA0065.2	1.17264e-11
MA0066.1	MA0066.1	0.216
MA0067.1	MA0067.1	0.175
MA0068.1	MA0068.1	0.182
MA0069.1	MA0069.1	0.0268
MA0070.1	MA0070.1	0.227
MA0071.1	MA0071.1	0.99
MA0072.1	MA0072.1	0.616
MA0073.1	MA0073.1	0.777
MA0074.1	MA0074.1	0.196
MA0076.1	MA0076.1	0.0389
MA0077.1	MA0077.1	0.0967
MA0078.1	MA0078.1	0.237
MA0079.2	MA0079.2	0.732
MA0080.2	MA0080.2	0.061
MA0081.1	MA0081.1	0.0223
MA0083.1	MA0083.1	0.606
MA0084.1	MA0084.1	0.86
MA0087.1	MA0087.1	0.396
MA0088.1	MA0088.1	0.95
MA0090.1	MA0090.1	0.637
MA0091.1	MA0091.1	0.997
MA0092.1	MA0092.1	0.153
MA0093.1	MA0093.1	0.581
MA0099.2	MA0099.2	0.177
MA0100.1	MA0100.1	0.0108
MA0101.1	MA0101.1	0.545
MA0102.2	MA0102.2	0.754
MA0103.1	MA0103.1	1.48839e-5
MA0104.2	MA0104.2	0.169
MA0105.1	MA0105.1	0.252
MA0106.1	MA0106.1	0.688
MA0107.1	MA0107.1	0.52
MA0108.2	MA0108.2	0.17
MA0111.1	MA0111.1	0.825
MA0112.2	MA0112.2	1.16896e-4
MA0113.1	MA0113.1	0.554
MA0114.1	MA0114.1	7.43193e-31
MA0115.1	MA0115.1	6.91523e-8
MA0116.1	MA0116.1	0.217
MA0117.1	MA0117.1	0.679
MA0119.1	MA0119.1	0.0397
MA0122.1	MA0122.1	0.642
MA0124.1	MA0124.1	0.203
MA0125.1	MA0125.1	0.591
MA0131.1	MA0131.1	0.483
MA0135.1	MA0135.1	0.239
MA0136.1	MA0136.1	0.714
MA0137.2	MA0137.2	0.756
MA0138.2	MA0138.2	0.578
MA0139.1	MA0139.1	0.00983
MA0140.1	MA0140.1	0.0371
MA0141.1	MA0141.1	0.00528
MA0142.1	MA0142.1	0.108
MA0143.1	MA0143.1	0.121
MA0144.1	MA0144.1	0.0622
MA0145.1	MA0145.1	0.0188
MA0146.1	MA0146.1	0.157
MA0147.1	MA0147.1	0.137
MA0148.1	MA0148.1	5.90408e-6
MA0149.1	MA0149.1	0.0368
MA0150.1	MA0150.1	0.967
MA0152.1	MA0152.1	0.88
MA0153.1	MA0153.1	1.0532e-47
MA0154.1	MA0154.1	0.0111
MA0155.1	MA0155.1	0.043
MA0156.1	MA0156.1	0.593
MA0157.1	MA0157.1	0.534
MA0159.1	MA0159.1	0.00438
MA0160.1	MA0160.1	0.1
MA0162.1	MA0162.1	0.254
MA0163.1	MA0163.1	0.0023
MA0164.1	MA0164.1	0.916
MA0258.1	MA0258.1	0.0637
MA0259.1	MA0259.1	0.141

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11102

Novel motif	Logo	P-value
1	1	0.311
10	10	0.184
100	100	0.689
101	101	0.906
102	102	0.444
103	103	0.1
104	104	0.807
105	105	0.587
106	106	0.0116
107	107	0.00778
108	108	0.616
109	109	0.0904
11	11	0.26
110	110	0.346
111	111	0.15
112	112	0.0167
113	113	0.35
114	114	0.163
115	115	0.769
116	116	0.27
117	117	0.678
118	118	0.4
119	119	0.248
12	12	0.854
120	120	0.792
121	121	0.883
122	122	0.772
123	123	0.167
124	124	0.858
125	125	0.947
126	126	0.0754
127	127	0.613
128	128	0.0442
129	129	0.485
13	13	0.00186
130	130	0.487
131	131	0.171
132	132	0.173
133	133	0.718
134	134	0.384
135	135	0.935
136	136	0.435
137	137	0.53
138	138	0.0137
139	139	0.0771
14	14	0.596
140	140	0.857
141	141	0.309
142	142	0.995
143	143	0.183
144	144	0.594
145	145	0.102
146	146	0.231
147	147	0.598
148	148	0.0481
149	149	0.283
15	15	0.173
150	150	0.24
151	151	0.544
152	152	0.0361
153	153	0.267
154	154	0.669
155	155	0.722
156	156	0.442
157	157	0.397
158	158	0.61
159	159	0.0978
160	160	0.0477
161	161	0.344
162	162	0.553
163	163	0.0455
164	164	0.102
165	165	0.428
166	166	0.685
167	167	0.821
168	168	0.313
169	169	0.013
17	17	0.0836
18	18	0.971
19	19	0.0563
2	2	0.0911
20	20	0.5
21	21	0.93
22	22	0.295
23	23	0.244
24	24	0.936
25	25	0.849
26	26	0.00495
27	27	0.539
28	28	0.813
29	29	0.609
3	3	0.286
30	30	0.359
31	31	0.51
32	32	0.0116
33	33	0.206
34	34	0.486
35	35	0.776
36	36	0.969
37	37	0.0586
38	38	0.462
39	39	0.0946
4	4	0.375
40	40	0.444
41	41	0.391
42	42	0.824
43	43	0.151
44	44	0.789
45	45	0.277
46	46	0.401
47	47	0.466
48	48	0.358
49	49	0.206
5	5	0.422
50	50	0.457
51	51	0.59
52	52	0.0266
53	53	0.721
54	54	0.656
55	55	0.276
56	56	0.38
57	57	0.687
58	58	0.525
59	59	0.148
6	6	0.724
60	60	0.0336
61	61	0.371
62	62	0.68
63	63	0.259
64	64	0.623
65	65	0.274
66	66	0.3
67	67	0.445
68	68	0.365
69	69	0.847
7	7	0.106
70	70	0.278
71	71	0.074
72	72	0.887
73	73	0.211
74	74	0.857
75	75	0.332
76	76	0.49
77	77	0.0638
78	78	0.106
79	79	0.645
8	8	0.321
80	80	0.552
81	81	0.566
82	82	0.173
83	83	0.921
84	84	0.994
85	85	0.0791
86	86	0.358
87	87	0.981
88	88	0.944
89	89	0.27
9	9	0.546
90	90	0.355
91	91	0.397
92	92	0.172
93	93	0.941
94	94	0.245
95	95	0.461
96	96	0.879
97	97	0.401
98	98	0.939
99	99	0.032

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11102

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011404 mouse intestine- neonate N06 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000312 (mouse neonate N6 sample)
0011404 (mouse intestine- neonate N06 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0005409,UBERON:0007026,UBERON:0006595
+|DRA_sample_Accession=CAGE@SAMD00005089
+|accession_numbers=CAGE;DRX008998;DRR009872;DRZ001297;DRZ002680;DRZ012647;DRZ014030
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0005409
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000004,FF:0000303,FF:0000312,FF:0011404
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:80555320..80555378,-!p1@Creb3l3!2.26!206.09!Creb3l3;;chr10:88969376..88969395,-!p1@Nr1h4!2.15!141.00!Nr1h4;;chr5:148118639..148118715,-!p1@Cdx2!2.14!135.97!Cdx2;;chr3:3634145..3634161,+!p1@Hnf4g!2.09!122.40!Hnf4g;;chr2:163372884..163372904,+!p1@Hnf4a!1.82!64.59!Hnf4a;;chr16:38294860..38294924,-!p1@Nr1i2!1.81!63.84!Nr1i2;;chr1:137155026..137155042,-!p1@Elf3!1.71!279.99!Elf3;;chr2:164228702..164228719,+!p1@Rbpjl!1.67!45.49!Rbpjl;;chr2:163332558..163332596,+!p2@Hnf4a!1.50!30.41!Hnf4a;;chr10:22539932..22539956,-!p1@Tcf21!1.47!74.14!Tcf21;;chr2:180069370..180069409,-!p1@Gata5!1.43!30.16!Gata5;;chr8:77396591..77396639,+!p1@Isx!1.43!26.14!Isx;;chr10:80555398..80555409,-!p2@Creb3l3!1.42!25.13!Creb3l3;;chr19:43686789..43686811,+!p1@Nkx2-3!1.40!23.88!Nkx2-3;;chr18:61195843..61195864,-!p2@Cdx1!1.39!23.63!Cdx1;;chr14:63864056..63864102,-!p1@Gata4!1.37!38.71!Gata4;;chr18:61195865..61195880,-!p1@Cdx1!1.37!22.62!Cdx1;;chr17:27865882..27865901,-!p1@Spdef!1.32!20.11!Spdef;;chr8:77397095..77397127,+!p2@Isx!1.29!18.60!Isx;;chr9:59796270..59796294,-!p4@Nr2e3!1.29!18.35!Nr2e3;;chr2:103123925..103123959,-!p3@Ehf!1.28!17.84!Ehf;;chr4:133109285..133109308,+!p1@Nr0b2!1.27!17.59!Nr0b2;;chr7:148452314..148452329,-!p1@Irf7!1.26!115.87!Irf7;;chr1:173144100..173144138,+!p2@Nr1i3!1.26!17.09!Nr1i3;;chr1:173144144..173144176,+!p1@Nr1i3!1.24!16.34!Nr1i3;;chr3:3508024..3508069,+!p2@Hnf4g!1.23!16.09!Hnf4g;;chr8:77397492..77397514,+!p3@Isx!1.23!16.09!Isx;;chr6:64679112..64679126,+!p1@Atoh1!1.23!15.83!Atoh1;;chr3:30039329..30039355,-!p5@Mecom!1.23!15.83!Mecom;;chr8:123608252..123608268,+!p1@Foxf1a!1.22!23.12!Foxf1a;;chr9:59796330..59796350,-!p6@Nr2e3!1.19!14.58!Nr2e3;;chr2:173044380..173044432,-!p1@Zbp1!1.18!33.43!Zbp1;;chr5:148118840..148118857,-!p2@Cdx2!1.18!14.07!Cdx2;;chr18:64499706..64499721,+!p2@Onecut2!1.17!19.35!Onecut2;;chr18:64499674..64499696,+!p1@Onecut2!1.16!23.37!Onecut2;;chr13:31717548..31717596,+!p1@Foxf2!1.15!25.89!Foxf2;;chr3:94176733..94176794,+!p1@Rorc!1.13!96.26!Rorc;;chr8:59799772..59799789,+!p1@Hand2!1.13!35.94!Hand2;;chr2:103143336..103143367,-!p1@Ehf!1.13!20.11!Ehf;;chr5:115421065..115421088,-!p1@Hnf1a!1.13!12.57!Hnf1a;;chr7:19608891..19608895,-!p1@Foxa3!1.11!15.33!Foxa3;;chr11:57645506..57645523,-!p1@Hand1!1.10!11.56!Hand1;;chr9:59797525..59797538,-!p2@Nr2e3!1.10!11.56!Nr2e3;;chr7:17642177..17642223,-!p3@Hif3a!1.09!11.31!Hif3a;;chr14:99697871..99697934,+!p1@Klf5!1.08!216.65!Klf5;;chr10:44178521..44178557,-!p1@Prdm1!1.07!19.35!Prdm1;;chr8:77396650..77396662,+!p4@Isx!1.07!10.81!Isx;;chr5:148118792..148118806,-!p3@Cdx2!1.05!10.30!Cdx2;;chr18:11052485..11052508,+!p2@Gata6!1.04!28.40!Gata6;;chr10:88996336..88996380,-!p2@Nr1h4!1.02!11.81!Nr1h4;;chr3:3508005..3508021,+!p3@Hnf4g!0.99!8.80!Hnf4g;;chr9:59797503..59797513,-!p3@Nr2e3!0.98!8.55!Nr2e3;;chr6:86619104..86619119,-!p1@Mxd1!0.97!70.63!Mxd1;;chr5:135582751..135582788,+!p1@Mlxipl!0.96!33.93!Mlxipl;;chr1:194982959..194983007,+!p5@Irf6!0.96!8.04!Irf6;;chr19:53384910..53384937,+!p3@Mxi1!0.94!22.62!Mxi1;;chr10:44178375..44178390,-!p2@Prdm1!0.94!10.56!Prdm1;;chr13:55932591..55932622,-!p1@Pitx1!0.94!9.30!Pitx1;;chr2:160192793..160192809,-!p1@Mafb!0.93!116.62!Mafb;;chr1:57029281..57029326,-!p1@Satb2!0.93!11.81!Satb2;;chr2:163372869..163372882,+!p3@Hnf4a!0.93!7.54!Hnf4a;;chr5:148118614..148118625,-!p4@Cdx2!0.93!7.54!Cdx2;;chr8:118231678..118231692,-!p2@Maf!0.91!67.11!Maf;;chr6:16848443..16848459,-!p3@Tfec!0.91!7.04!Tfec;;chr1:165219345..165219366,-!p7@Prrx1!0.91!7.04!Prrx1;;chr14:63890545..63890560,-!p5@Gata4!0.91!7.04!Gata4;;chr11:83664365..83664383,+!p1@Hnf1b!0.91!7.04!Hnf1b;;chr11:98614335..98614349,+!p8@Thra!0.91!7.04!Thra;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.90!20.86!Tfcp2l1;;chr3:90046995..90047031,-!p2@Creb3l4!0.90!8.80!Creb3l4;;chr2:19367259..19367278,+!p1@Ptf1a!0.89!6.79!Ptf1a;;chr10:44178493..44178520,-!p3@Prdm1!0.88!9.30!Prdm1;;chr9:59797133..59797145,-!p7@Nr2e3!0.88!6.53!Nr2e3;;chr1:194979315..194979359,+!p1@Irf6!0.87!40.97!Irf6;;chr2:77357622..77357704,-!p1@Zfp385b!0.87!17.84!Zfp385b;;chr11:96153767..96153822,+!p1@Hoxb6!0.87!10.30!Hoxb6;;chr8:123260252..123260264,+!p1@Irf8!0.83!42.98!Irf8;;chr1:138857048..138857071,-!p2@Nr5a2!0.83!5.78!Nr5a2;;chr5:120121446..120121461,+!p2@Tbx3!0.82!19.86!Tbx3;;chr8:77397190..77397202,+!p5@Isx!0.81!5.53!Isx;;chr2:103143315..103143328,-!p2@Ehf!0.81!5.53!Ehf;;chr9:59796372..59796383,-!p8@Nr2e3!0.80!5.28!Nr2e3;;chr15:97738692..97738747,-!p1@Vdr!0.79!30.66!Vdr;;chr10:44178474..44178487,-!p4@Prdm1!0.79!7.79!Prdm1;;chr7:17642053..17642066,-!p2@Hif3a!0.79!7.54!Hif3a;;chr11:53583544..53583559,+!p1@Irf1!0.78!92.99!Irf1;;chr14:63890519..63890539,-!p3@Gata4!0.78!5.03!Gata4;;chr10:80598968..80599012,+!p5@Zbtb7a!0.77!6.53!Zbtb7a;;chr6:16848395..16848416,-!p2@Tfec!0.77!5.78!Tfec;;chr12:58646974..58647003,-!p1@Foxa1!0.76!6.53!Foxa1;;chr10:127095407..127095440,+!p3@Stat6!0.76!6.03!Stat6;;chr9:59797088..59797101,-!p9@Nr2e3!0.76!4.78!Nr2e3;;chr19:6996243..6996293,-!p1@Esrra!0.75!56.55!Esrra;;chr5:120121020..120121049,+!p1@Tbx3!0.75!31.17!Tbx3;;chr13:31650185..31650201,+!p1@Foxq1!0.75!17.59!Foxq1;;chr18:11052456..11052477,+!p3@Gata6!0.75!15.58!Gata6;;chr5:144951153..144951203,+!p1@Bhlha15!0.75!7.04!Bhlha15;;chr6:52190467..52190500,-!p1@Hoxa10!0.74!4.52!Hoxa10;;chr2:180069410..180069421,-!p3@Gata5!0.74!4.52!Gata5;;chr2:153067079..153067090,-!p2@Plagl2!0.73!9.80!Plagl2;;chr19:5560600..5560617,-!p1@Ovol1!0.73!5.53!Ovol1;;chr18:11052642..11052659,+!p1@Gata6!0.72!23.88!Gata6;;chr2:79296783..79296801,-!p1@Neurod1!0.72!4.27!Neurod1;;chr6:99216375..99216395,-!p5@Foxp1!0.72!4.27!Foxp1;;chr5:67490284..67490302,-!p1@Phox2b!0.72!4.27!Phox2b;;chr2:173044357..173044377,-!p2@Zbp1!0.70!6.03!Zbp1;;chr2:180069640..180069660,-!p4@Gata5!0.70!4.02!Gata5;;chr14:63890491..63890516,-!p2@Gata4!0.70!4.02!Gata4;;chr8:118231705..118231722,-!p3@Maf!0.69!35.69!Maf;;chr2:153067138..153067147,-!p3@Plagl2!0.68!6.53!Plagl2;;chr6:115311030..115311065,+!p4@Pparg!0.68!5.78!Pparg;;chr6:52190668..52190682,-!p3@Hoxa10!0.68!3.77!Hoxa10;;chr5:148118809..148118832,-!p5@Cdx2!0.68!3.77!Cdx2;;chr12:39510206..39510249,+!p3@Etv1!0.68!3.77!Etv1;;chr6:52154414..52154462,-!p1@Hoxa5!0.67!5.28!Hoxa5;;chr11:96147952..96147967,+!p1@Hoxb7!0.67!4.78!Hoxb7;;chr1:138846009..138846038,-!p3@Nr5a2!0.67!4.27!Nr5a2;;chr11:96055613..96055628,+!p1@Hoxb13!0.66!3.52!Hoxb13;;chr7:108966820..108966835,+!p1@Phox2a!0.66!3.52!Phox2a;;chr13:31717597..31717613,+!p2@Foxf2!0.66!3.52!Foxf2;;chr2:153067094..153067130,-!p1@Plagl2!0.65!100.03!Plagl2;;chr4:55545337..55545357,-!p1@Klf4!0.65!60.32!Klf4;;chr10:79389784..79389833,+!p1@Arid3a!0.65!21.11!Arid3a;;chr2:166888058..166888105,-!p2@Znfx1!0.63!12.06!Znfx1;;chr3:128916868..128916890,+!p1@Pitx2!0.63!4.78!Pitx2;;chr2:180069423..180069434,-!p2@Gata5!0.63!3.27!Gata5;;chr1:138846079..138846103,-!p6@Nr5a2!0.63!3.27!Nr5a2;;chr19:43686882..43686906,+!p2@Nkx2-3!0.63!3.27!Nkx2-3;;chr10:61595830..61595846,+!p1@Neurog3!0.63!3.27!Neurog3;;chr8:77397026..77397036,+!p6@Isx!0.63!3.27!Isx;;chr6:99216360..99216372,-!p8@Foxp1!0.63!3.27!Foxp1;;chr5:148081686..148081715,+!p1@Pdx1!0.63!3.27!Pdx1;;chr19:6996294..6996324,-!p2@Esrra!0.62!24.88!Esrra;;chr4:154010918..154010931,-!p1@Prdm16!0.62!10.56!Prdm16;;chr13:31650026..31650045,+!p2@Foxq1!0.62!5.78!Foxq1;;chr1:194979361..194979373,+!p2@Irf6!0.62!4.52!Irf6;;chr7:17642018..17642045,-!p4@Hif3a!0.62!3.77!Hif3a;;chr10:79390075..79390115,+!p2@Arid3a!0.61!12.06!Arid3a;;chr18:11052606..11052633,+!p4@Gata6!0.60!8.55!Gata6;;chr18:36441119..36441158,+!p2@Pura!0.60!8.29!Pura;;chr12:39507680..39507715,+!p2@Etv1!0.60!6.53!Etv1;;chr17:28409136..28409150,+!p3@Ppard!0.60!3.02!Ppard;;chr2:153067445..153067460,-!p6@Plagl2!0.60!3.02!Plagl2;;chr10:79884592..79884621,-!p5@Tcf3!0.60!3.02!Tcf3;;chr6:83020355..83020371,-!p1@Tlx2!0.60!3.02!Tlx2;;chr8:79426176..79426275,+!p1@Nr3c2!0.59!17.09!Nr3c2;;chr3:89197057..89197114,-!p1@Zbtb7b!0.58!11.31!Zbtb7b;;chr15:102865131..102865151,+!p2@Hoxc4!0.58!3.27!Hoxc4;;chr2:75543089..75543122,-!p3@Nfe2l2!0.58!2.76!Nfe2l2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.58!2.76!Nkx3-2;;chr1:138857076..138857105,-!p1@Nr5a2!0.58!2.76!Nr5a2;;chr11:96164821..96164865,+!p1@Hoxb5!0.58!2.76!Hoxb5;;chr1:135320962..135320981,-!p2@Sox13!0.57!10.81!Sox13;;chr12:78063146..78063159,-!p2@Max!0.57!8.29!Max;;chr2:104966766..104966786,+!p1@Wt1!0.57!4.78!Wt1;;chr2:153067233..153067236,-!p4@Plagl2!0.57!3.52!Plagl2;;chr10:44178575..44178590,-!p5@Prdm1!0.57!3.52!Prdm1;;chr2:91035254..91035271,-!p3@Nr1h3!0.57!3.52!Nr1h3;;chr16:87699237..87699279,+!p1@Bach1!0.56!34.43!Bach1;;chr1:39250584..39250643,+!p1@Npas2!0.56!16.09!Npas2;;chr2:133377954..133377973,+!p1@Bmp2!0.56!10.05!Bmp2;;chr6:39068163..39068176,-!p2@Parp12!0.56!5.53!Parp12;;chr13:37918684..37918701,+!p12@Rreb1!0.56!3.27!Rreb1;;chr10:88996295..88996335,-!p3@Nr1h4!0.56!3.27!Nr1h4;;chr8:124806048..124806094,+!p1@Zfpm1!0.55!29.15!Zfpm1;;chr4:148275237..148275311,+!p2@Casz1!0.55!12.82!Casz1;;chr4:114581497..114581519,-!p2@Foxd2!0.55!2.51!Foxd2;;chr9:59797875..59797929,-!p1@Nr2e3!0.55!2.51!Nr2e3;;chr9:74709695..74709722,+!p1@Onecut1!0.55!2.51!Onecut1;;chr18:11052516..11052525,+!p5@Gata6!0.55!2.51!Gata6;;chr6:108610610..108610676,+!p1@Bhlhe40!0.54!153.82!Bhlhe40;;chr10:30375579..30375616,-!p3@Ncoa7!0.54!6.79!Ncoa7;;chr10:126778916..126778974,-!p1@Gli1!0.53!6.28!Gli1;;chr6:52154386..52154407,-!p2@Hoxa5!0.53!3.27!Hoxa5;;chr19:53384985..53385042,+!p1@Mxi1!0.52!93.75!Mxi1;;chr15:35225845..35225867,+!p1@Osr2!0.51!6.79!Osr2;;chr1:138846047..138846074,-!p5@Nr5a2!0.51!2.51!Nr5a2;;chr6:52195795..52195825,-!p1@Hoxa11!0.51!2.26!Hoxa11;;chr7:150155143..150155156,-!p1@Ascl2!0.51!2.26!Ascl2;;chr5:115421126..115421137,-!p4@Hnf1a!0.51!2.26!Hnf1a;;chr6:16848460..16848471,-!p5@Tfec!0.51!2.26!Tfec;;chr2:74529970..74529997,+!p1@Hoxd10!0.51!2.26!Hoxd10;;chr13:55932739..55932756,-!p5@Pitx1!0.51!2.26!Pitx1;;chr15:102828658..102828678,+!p1@Hoxc6!0.51!2.26!Hoxc6;;chr9:55388997..55389016,+!p1@Isl2!0.51!2.26!Isl2;;chr14:79915425..79915501,+!p1@Elf1!0.50!25.13!Elf1;;chr1:120879128..120879183,-!p3@Gli2!0.50!4.78!Gli2;;chr6:39068210..39068251,-!p1@Parp12!0.49!12.32!Parp12;;chr11:96145450..96145517,+!p2@Hoxb7!0.49!3.52!Hoxb7;;chr5:120121169..120121171,+!p4@Tbx3!0.48!4.27!Tbx3;;chr1:194979301..194979310,+!p4@Irf6!0.48!2.51!Irf6;;chr1:138846117..138846129,-!p8@Nr5a2!0.48!2.01!Nr5a2;;chr5:115420882..115420896,-!p3@Hnf1a!0.48!2.01!Hnf1a;;chr14:63890459..63890484,-!p4@Gata4!0.48!2.01!Gata4;;chr19:5560570..5560582,-!p2@Ovol1!0.48!2.01!Ovol1;;chr7:20408047..20408125,-!p1@Bcl3!0.47!29.91!Bcl3;;chr15:37162796..37162828,+!p1@Grhl2!0.47!3.77!Grhl2;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.47!3.52!Ncoa4;;chr12:109241852..109241873,-!p4@Bcl11b!0.47!2.51!Bcl11b;;chr10:12810631..12810649,+!p1@Plagl1!0.46!67.86!Plagl1;;chr1:135320989..135321043,-!p1@Sox13!0.46!28.65!Sox13;;chr10:127707602..127707633,+!p1@Stat2!0.46!22.87!Stat2;;chr16:87699206..87699229,+!p3@Bach1!0.46!13.57!Bach1;;chr3:89197551..89197606,-!p2@Zbtb7b!0.46!8.29!Zbtb7b;;chr13:56804865..56804898,+!p3@Smad5!0.46!6.28!Smad5;;chr11:53583960..53584007,+!p2@Irf1!0.46!5.03!Irf1;;chr7:51787434..51787448,-!p1@Spib!0.46!3.02!Spib;;chr6:52176164..52176195,-!p1@Hoxa9!0.46!2.51!Hoxa9;;chr5:138187181..138187192,+!p5@Tsc22d4!0.45!6.03!Tsc22d4;;chr4:87452200..87452229,-!p2@Mllt3!0.45!4.78!Mllt3;;chr15:85566014..85566045,+!p3@Ppara!0.45!2.76!Ppara;;chr10:126727842..126727859,+!p1@Ddit3!0.44!71.88!Ddit3;;chr12:109242266..109242295,-!p1@Bcl11b!0.44!20.61!Bcl11b;;chr10:20880629..20880683,-!p1@Myb!0.44!6.53!Myb;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.44!3.52!Hoxb2;;chr10:80598209..80598236,+!p4@Zbtb7a!0.44!3.52!Zbtb7a;;chr11:53164556..53164567,+!p5@Aff4!0.44!3.27!Aff4;;chr6:52664406..52664434,+!p3@Tax1bp1!0.44!2.26!Tax1bp1;;chr6:52168685..52168715,-!p9@Hoxa7!0.44!1.76!Hoxa7;;chr5:148081722..148081744,+!p2@Pdx1!0.44!1.76!Pdx1;;chr11:98826216..98826227,+!p10@Rara!0.44!1.76!Rara;;chr10:80555299..80555306,-!p3@Creb3l3!0.44!1.76!Creb3l3;;chr1:194979383..194979393,+!p3@Irf6!0.44!1.76!Irf6;;chr8:123651727..123651748,+!p1@ENSMUST00000062634!0.44!1.76!Foxl1;;chr13:55932624..55932641,-!p2@Pitx1!0.44!1.76!Pitx1;;chr2:74583776..74583815,+!p3@Hoxd3!0.44!1.76!Hoxd3;;chr8:118231723..118231740,-!p1@Maf!0.43!54.29!Maf;;chr7:97591412..97591431,+!p2@Crebzf!0.43!5.78!Crebzf;;chr1:133904946..133904974,+!p7@Elk4!0.43!3.02!Elk4;;chr1:92949999..92950097,+!p1@Lrrfip1!0.42!62.83!Lrrfip1;;chr1:52176315..52176343,+!p1@Stat1!0.42!33.93!Stat1;;chr6:39068181..39068206,-!p3@Parp12!0.42!4.27!Parp12;;chr3:89197216..89197258,-!p3@Zbtb7b!0.42!4.27!Zbtb7b;;chr17:32506357..32506377,-!p3@Wiz!0.42!4.27!Wiz;;chr6:52163319..52163342,-!p1@Hoxa3!0.42!2.76!Hoxa3;;chr7:134519473..134519502,-!p3@Zfp747!0.42!2.51!Zfp747;;chr7:56136349..56136360,-!p5@E2f8!0.42!2.26!E2f8;;chr11:96143666..96143725,+!p1@Hoxb8!0.42!2.01!Hoxb8;;chr6:99470943..99471024,-!p3@Foxp1!0.41!21.87!Foxp1;;chr7:56136362..56136400,-!p1@E2f8!0.41!14.58!E2f8;;chr7:6649134..6649167,-!p1@Zim1!0.41!12.06!Zim1;;chr1:186556323..186556370,-!p2@Hlx!0.41!5.78!Hlx;;chr7:38554763..38554780,-!p1@Zfp536!0.41!3.52!Zfp536;;chr16:55822638..55822669,-!p3@Nfkbiz!0.41!2.76!Nfkbiz;;chr7:134488857..134488914,-!p1@Zfp768!0.40!29.91!Zfp768;;chr17:22362583..22362606,-!p1@Gm4944!0.40!6.03!Gm4944;;chr8:81552216..81552249,+!p3@Zfp827!0.40!5.78!Zfp827;;chr18:84255649..84255661,-!p4@Tshz1!0.40!5.28!Tshz1;;chr6:115310872..115310899,+!p2@Pparg!0.40!3.27!Pparg;;chr6:52184901..52184959,-!p2@Hoxa10!0.40!1.51!Hoxa10;;chr5:148081667..148081678,+!p3@Pdx1!0.40!1.51!Pdx1;;chr1:57029027..57029056,-!p7@Satb2!0.40!1.51!Satb2;;chr11:98822047..98822072,+!p9@Rara!0.40!1.51!Rara;;chr10:30491690..30491727,-!p5@Ncoa7!0.40!1.51!Ncoa7;;chr11:96055681..96055693,+!p2@Hoxb13!0.40!1.51!Hoxb13;;chr8:77397169..77397182,+!p7@Isx!0.40!1.51!Isx;;chr3:128916838..128916856,+!p4@Pitx2!0.40!1.51!Pitx2;;chr3:90046983..90046994,-!p6@Creb3l4!0.40!1.51!Creb3l4;;chr2:81893535..81893548,+!p1@Zfp804a!0.40!1.51!Zfp804a;;chr15:102839948..102839975,+!p3@Hoxc6!0.40!1.51!Hoxc6;;chr12:87702062..87702081,+!p4@Esrrb!0.40!1.51!Esrrb;;chr7:35904304..35904320,+!p1@Cebpa!0.39!45.49!Cebpa;;chr8:81552152..81552208,+!p1@Zfp827!0.39!15.58!Zfp827;;chr18:75527030..75527055,+!p2@Smad7!0.39!13.32!Smad7;;chr11:6375884..6375920,-!p2@Purb!0.39!7.29!Purb;;chr17:47874123..47874156,+!p2@Tfeb!0.39!4.27!Tfeb;;chr1:186556375..186556404,-!p3@Hlx!0.39!3.27!Hlx;;chr17:48061381..48061399,-!p1@Foxp4!0.38!24.13!Foxp4;;chr2:32218712..32218782,+!p2@Ciz1!0.38!21.36!Ciz1;;chr18:84255841..84255883,-!p1@Tshz1!0.38!14.58!Tshz1;;chr10:80812991..80813004,-!p3@Hmg20b!0.38!3.77!Hmg20b;;chr2:74542918..74542971,+!p1@Hoxd8!0.38!2.51!Hoxd8;;chr17:47873985..47874056,+!p1@Tfeb!0.37!17.09!Tfeb;;chr11:85646303..85646329,+!p1@Tbx2!0.37!13.57!Tbx2;;chr14:65977324..65977372,+!p2@Zfp395!0.37!11.31!Zfp395;;chr7:4990029..4990052,-!p1@Zfp784!0.37!6.28!Zfp784;;chr6:14851287..14851342,+!p1@Foxp2!0.37!6.28!Foxp2;;chr5:76733981..76734018,-!p3@Clock!0.37!3.77!Clock;;chr6:16848347..16848391,-!p1@Tfec!0.37!2.01!Tfec;;chr1:138845748..138845766,-!p4@Nr5a2!0.37!2.01!Nr5a2;;chr10:88145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p521!0.13!2.01!Zfp521;;chr8:87297280..87297326,-!p2@Nfix!0.13!2.01!Nfix;;chr6:72849280..72849297,-!p6@Kcmf1!0.13!1.51!Kcmf1;;chr18:3337465..3337498,-!p6@Crem!0.13!1.51!Crem;;chr17:51951634..51951651,-!p6@Satb1!0.13!1.51!Satb1;;chr2:65683890..65683907,+!p1@Csrnp3!0.13!1.51!Csrnp3;;chr11:3189171..3189197,+!p4@Patz1!0.13!1.51!Patz1;;chr8:87324171..87324182,-!p6@Nfix!0.13!1.26!Nfix;;chr14:100684036..100684068,-!p5@Klf12!0.13!1.26!Klf12;;chr17:44873393..44873418,-!p4@Runx2!0.13!1.26!Runx2;;chr18:83079981..83080037,+!p6@Zfp516!0.13!1.26!Zfp516;;chr10:127176667..127176679,+!p2@Zbtb39!0.13!1.01!Zbtb39;;chr12:3806513..3806527,+!p9@Dnmt3a!0.13!1.01!Dnmt3a;;chr10:126723307..126723319,-!p6@Mbd6!0.13!0.75!Mbd6;;chr7:119822892..119822901,+!p7@Tead1!0.13!0.75!Tead1;;chr1:64168228..64168250,-!p7@Klf7!0.13!0.75!Klf7;;chr18:69752598..69752607,+!p26@Tcf4!0.13!0.50!Tcf4;;chr16:55838940..55838966,-!p5@Nfkbiz!0.13!0.50!Nfkbiz;;chr4:48058102..48058110,+!p5@Nr4a3!0.13!0.50!Nr4a3;;chr5:120121262..120121282,+!p6@Tbx3!0.13!0.50!Tbx3;;chr15:75578637..75578669,-!p2@Mafa!0.13!0.50!Mafa;;chr19:55816300..55816332,+!p1@Tcf7l2!0.12!55.80!Tcf7l2;;chr2:167514456..167514473,+!p1@Cebpb!0.12!52.28!Cebpb;;chr8:124900511..124900552,+!p1@Zc3h18!0.12!41.97!Zc3h18;;chr5:25004566..25004590,-!p1@Mll3!0.12!26.89!Mll3;;chr18:75527009..75527027,+!p1@Smad7!0.12!24.38!Smad7;;chr19:41557122..41557178,+!p1@Lcor!0.12!24.38!Lcor;;chr8:87502608..87502623,-!p1@Junb!0.12!18.85!Junb;;chr11:5420954..5420969,+!p2@Xbp1!0.12!14.33!Xbp1;;chr6:47827642..47827707,+!p1@Zfp282!0.12!12.06!Zfp282;;chr11:100721761..100721851,+!p1@Stat5a!0.12!8.04!Stat5a;;chr9:21420572..21420591,+!p2@Smarca4!0.12!5.78!Smarca4;;chr5:147760305..147760324,+!p2@Gtf3a!0.12!5.03!Gtf3a;;chr10:20032330..20032345,+!p3@Bclaf1!0.12!5.03!Bclaf1;;chr8:81923412..81923431,-!p2@Smad1!0.12!3.52!Smad1;;chr10:79896328..79896339,-!p3@Tcf3!0.12!3.27!Tcf3;;chr1:133904217..133904250,+!p5@Elk4!0.12!3.02!Elk4;;chr4:119960301..119960359,-!p1@Foxo6!0.12!3.02!Foxo6;;chr2:115891454..115891471,-!p3@Meis2!0.12!2.76!Meis2;;chr6:72849808..72849837,-!p4@Kcmf1!0.12!2.76!Kcmf1;;chr7:134550289..134550313,-!p1@Zfp764!0.12!2.01!Zfp764;;chr10:26093876..26093894,-!p2@L3mbtl3!0.12!2.01!L3mbtl3;;chr9:32349240..32349276,-!p2@Fli1!0.12!2.01!Fli1;;chr4:87678743..87678767,-!p7@Mllt3!0.12!2.01!Mllt3;;chr18:7004715..7004731,-!p1@Mkx!0.12!2.01!Mkx;;chr8:112229540..112229566,+!p2@Zfp821!0.12!1.76!Zfp821;;chr7:148513574..148513593,-!p5@Deaf1!0.12!1.51!Deaf1;;chr6:128250471..128250519,-!p1@Tead4!0.12!1.51!Tead4;;chr13:5860872..5860883,+!p3@Klf6!0.12!1.51!Klf6;;chr13:58501849..58501853,-!p5@Hnrnpk!0.12!1.26!Hnrnpk;;chr6:92041489..92041500,+!p4@Nr2c2!0.12!1.26!Nr2c2;;chr1:170361777..170361797,-!p10@Pbx1!0.12!1.26!Pbx1;;chr2:151969288..151969294,+!p1@Tcf15!0.12!1.01!Tcf15;;chr11:52096750..52096772,-!p4@Tcf7!0.12!1.01!Tcf7;;chr10:62327990..62328025,-!p2@Tet1!0.12!1.01!Tet1;;chr8:87237732..87237745,-!p7@Nfix!0.12!1.01!Nfix;;chr4:135840552..135840567,+!p4@Zfp46!0.12!1.01!Zfp46;;chr3:32264530..32264544,-!p2@Zmat3!0.12!1.01!Zmat3;;chrX:103070960..103070973,-!p7@Atrx!0.12!0.75!Atrx;;chr16:11176344..11176353,-!p2@Zc3h7a!0.12!0.75!Zc3h7a;;chr5:138187775..138187845,+!p7@Tsc22d4!0.12!0.75!Tsc22d4;;chr5:108494765..108494786,+!p2@Mtf2!0.12!0.75!Mtf2;;chr6:99471147..99471161,-!p9@Foxp1!0.12!0.75!Foxp1;;chr15:75799634..75799645,+!p4@Zfp707!0.12!0.50!Zfp707;;chr16:43236133..43236154,+!p17@Zbtb20!0.12!0.50!Zbtb20;;chr18:36441100..36441113,+!p3@Pura!0.12!0.50!Pura;;chr5:104183579..104183600,+!p9@Aff1!0.12!0.50!Aff1;;chr8:90328310..90328362,-!p3@Zfp423!0.12!0.50!Zfp423;;chr18:74375851..74375891,+!p1@Cxxc1!0.11!45.49!Cxxc1;;chr14:65568675..65568723,-!p1@Hmbox1!0.11!37.70!Hmbox1;;chr2:27532754..27532815,+!p1@Rxra!0.11!33.43!Rxra;;chr15:81641878..81641921,+!p1@Tef!0.11!29.91!Tef;;
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316,FF:0000294
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |has_quality=
 |id=FF:688-20B8
-|is_a=EFO:0002091;;FF:0000004;;FF:0000103;;FF:0011404
+|is_a=EFO:0002091;;FF:0011404
+|is_obsolete=
+|library_id=CNhs11102
+|library_id_phase_based=2:CNhs11102
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;688
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;688
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N06.CNhs11102.688-20B8.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N06.CNhs11102.688-20B8.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N06.CNhs11102.688-20B8.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N06.CNhs11102.688-20B8.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/intestine%252c%2520neonate%2520N06.CNhs11102.688-20B8.mm9.nobarcode.rdna.fa.gz
 |name=intestine, neonate N06
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11102,LSID733,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|repeat_enrich_byfamily=0.130555976262395,0,0,0,0.0973736644748266,0.0343353591305002,0.305463650259534,0,0.104011857749843,0,0,0.0925244963358483,0,0,0,0,0,0,0.0521376312551465,0,0,0,0,0,0,0.244030982137721,0,0,0,0,0,0,0.397876612069852,0,0,0,0.440806233612666,0,0.0786965259964278,-0.00472904964242138,0.0307939444407406,0.140143673814262,0.333927499899497,0,0,0,0,0,0,0,0,0,0,0,0,0.374800686049225,0,0,0,0,0.201184027054846,0,-0.00868107438192615,0.0105591849904403,0.0973736644748266,0.058101525391623,0.0594739338240637,0.168014181170295,0.282715190841583,0.0914592236251797,0,0.169577240397365,0.00998025013652271,0,0.302188197538295,0,0,0.0528830042640483,0.0342441686994899,0.165199387297814,0,0,0,0,0,0,0.0973736644748266,0.246642956602867,-0.0214514296286246,0.0395415968857129,0,0,0,0
 |rna_box=20
 |rna_catalog_number=
@@ Line 57: / Line 76: @@
 |rna_weight_ug=
 |sample_age=
+|sample_category=developmental
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 76: / Line 96: @@
 |sample_tissue=intestine
 |top_motifs=CDX1,2,4:2.65794917663;HNF4A_NR2F1,2:2.3312881256;FOXM1:2.08901985922;DMAP1_NCOR{1,2}_SMARC:1.97037617025;HNF1A:1.78296907656;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.6484692723;RXRA_VDR{dimer}:1.64717644559;SNAI1..3:1.64575752982;NR6A1:1.51992567484;GZF1:1.23867238946;IRF1,2:1.16476590559;PDX1:1.08448831481;EVI1:1.00064657853;POU1F1:0.97734040224;FOXP1:0.960906679073;ZEB1:0.957296870438;ESRRA:0.929514086461;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.901168370188;TAL1_TCF{3,4,12}:0.881634303364;SREBF1,2:0.874593041484;XCPE1{core}:0.824399868285;ATF6:0.783190208094;MYBL2:0.765906947159;TLX1..3_NFIC{dimer}:0.762391146482;TBX4,5:0.75874054611;MYOD1:0.716640369902;NR1H4:0.705536868327;FOSL2:0.675731747674;TP53:0.663066586107;ZNF423:0.654170150146;SRF:0.653705601722;ARID5B:0.644057971086;FOXA2:0.640732130309;SP1:0.610501536323;TOPORS:0.49842076427;NFIX:0.489385345588;ZNF148:0.488030848355;EN1,2:0.477911379499;TLX2:0.472664005509;NKX2-2,8:0.411820042758;FOX{D1,D2}:0.406873923624;STAT1,3:0.402589258344;TBP:0.39449444022;GATA6:0.390173661011;STAT2,4,6:0.355238404019;BPTF:0.340215606859;ESR1:0.340042516503;EBF1:0.287411231832;NKX2-1,4:0.285677080217;ADNP_IRX_SIX_ZHX:0.280842783403;TFAP4:0.258890192168;MAZ:0.258716763199;FOX{I1,J2}:0.257841162274;LMO2:0.243668512996;T:0.241627911434;IRF7:0.22208576307;RBPJ:0.203936611819;DBP:0.16979567726;AR:0.167034542863;TEAD1:0.163452770389;IKZF2:0.161717031329;POU6F1:0.142406242715;ONECUT1,2:0.133680161248;ETS1,2:0.124069942164;GFI1:0.108168343512;FOXD3:0.106702687512;GTF2A1,2:0.104448753494;FOXO1,3,4:0.0711354355655;ELF1,2,4:0.0695059587563;HAND1,2:0.0659073206121;PAX4:0.0652822412045;NKX6-1,2:0.0609091673824;FOS_FOS{B,L1}_JUN{B,D}:0.0525383460171;LEF1_TCF7_TCF7L1,2:0.0455832869886;NANOG:-0.00945653739955;ZBTB6:-0.011884637825;REST:-0.0222458966239;SPI1:-0.0223204342219;PAX6:-0.0304550020016;FOX{F1,F2,J1}:-0.0340613486274;CEBPA,B_DDIT3:-0.0354852185629;GTF2I:-0.0371266950052;CDC5L:-0.0728118664146;ZNF238:-0.0743723441273;MYFfamily:-0.0747431308243;NKX3-1:-0.0771501990616;FOXQ1:-0.0802262923674;GCM1,2:-0.0932683699915;ZNF384:-0.117677698637;GATA4:-0.131790560924;HIF1A:-0.150067280847;CUX2:-0.154727406061;GLI1..3:-0.161742060841;AIRE:-0.168265588535;PITX1..3:-0.173766327717;TFCP2:-0.178827592173;LHX3,4:-0.190703760365;JUN:-0.20549281869;FOXL1:-0.208223731384;TEF:-0.221198277344;IKZF1:-0.22487848334;E2F1..5:-0.229089723673;PBX1:-0.2350616041;MTE{core}:-0.23993872704;HBP1_HMGB_SSRP1_UBTF:-0.248790391915;RREB1:-0.270792670279;HOXA9_MEIS1:-0.286119828448;TFAP2B:-0.29280795553;SPIB:-0.32497866071;UFEwm:-0.325054394677;NKX3-2:-0.325264691797;bHLH_family:-0.341322766174;HES1:-0.346121640921;NFKB1_REL_RELA:-0.34755275508;NFIL3:-0.362173707449;PATZ1:-0.374214618352;HIC1:-0.384262958158;PRDM1:-0.399282609193;YY1:-0.402025551626;SPZ1:-0.405088974282;NR5A1,2:-0.411562182138;GFI1B:-0.411784121645;HMX1:-0.413759654208;NKX2-3_NKX2-5:-0.427345425352;OCT4_SOX2{dimer}:-0.428927484967;NANOG{mouse}:-0.429991757281;NFY{A,B,C}:-0.438923987399;MED-1{core}:-0.443865912188;NR3C1:-0.455870053741;FOXP3:-0.463798475783;RUNX1..3:-0.484435550764;ATF5_CREB3:-0.492062622789;TFAP2{A,C}:-0.503614385461;ATF2:-0.510312872038;MTF1:-0.528538653662;KLF4:-0.531145034473;ZBTB16:-0.534995680028;CREB1:-0.536497453257;BACH2:-0.536878881504;PAX2:-0.539220042528;PAX5:-0.54398293376;HMGA1,2:-0.545036570183;BREu{core}:-0.546934676108;SOX5:-0.56717143732;PRRX1,2:-0.575030931485;MYB:-0.583168534152;EGR1..3:-0.586510848146;FOXN1:-0.606000169184;VSX1,2:-0.606139195037;HSF1,2:-0.616565703594;ZFP161:-0.617832829966;MAFB:-0.620251658207;ZIC1..3:-0.626590604058;ELK1,4_GABP{A,B1}:-0.628329001079;SMAD1..7,9:-0.632563595705;POU5F1:-0.637266314799;PAX1,9:-0.645830393253;ALX1:-0.648008886184;POU3F1..4:-0.658389299938;PAX8:-0.66284073999;ALX4:-0.678484217654;STAT5{A,B}:-0.692527119071;NFE2:-0.692739850748;NHLH1,2:-0.699667397649;TGIF1:-0.726822614862;TFDP1:-0.748160005329;RFX1:-0.753949105347;MEF2{A,B,C,D}:-0.760913925569;EP300:-0.783308826099;HLF:-0.789407184443;POU2F1..3:-0.797489896787;MZF1:-0.806560912551;SOX17:-0.813129595969;CRX:-0.824622763186;NFE2L2:-0.850671763792;SOX2:-0.87383584222;NFATC1..3:-0.892432222074;RFX2..5_RFXANK_RFXAP:-0.906493200881;AHR_ARNT_ARNT2:-0.988713890582;PPARG:-1.06587415306;SOX{8,9,10}:-1.07362821211;ATF4:-1.19037004256;RXR{A,B,G}:-1.20983897526;RORA:-1.22350030097;ZNF143:-1.26965819132;NRF1:-1.28401067704;NFE2L1:-1.32137005859;HOX{A4,D4}:-1.63622865855;HOX{A5,B5}:-1.75283026579
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:688-20B8;search_select_hide=table117:688-20B8
 }}

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FF:688-20B8: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 19:19, 4 June 2020

CNhs11102

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0