FF:89-27D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023 | |DRA_sample_Accession=CAGE@SAMD00005786 | ||
|accession_numbers=CAGE;DRX009130;DRR010004;DRZ001429;DRZ002812;DRZ012779;DRZ014162 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000996,UBERON:0003134,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000101,FF:0000103,FF:0000001,FF:0000998,FF:0000004,FF:0011438 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:103143336..103143367,-!p1@Ehf!2.49!489.40!Ehf;;chr16:25801993..25802014,+!p1@Trp63!2.13!133.12!Trp63;;chr12:75002389..75002406,+!p4@Hif1a!2.13!132.48!Hif1a;;chr13:55932591..55932622,-!p1@Pitx1!2.10!149.20!Pitx1;;chr11:121380640..121380655,-!p1@Zfp750!2.09!199.36!Zfp750;;chr10:5636354..5636373,-!p2@Esr1!2.09!121.76!Esr1;;chr2:103143315..103143328,-!p2@Ehf!2.08!118.97!Ehf;;chr4:135129538..135129558,-!p1@Grhl3!2.01!149.63!Grhl3;;chr11:121380594..121380609,-!p2@Zfp750!1.97!156.06!Zfp750;;chr10:5636374..5636421,-!p1@Esr1!1.95!109.11!Esr1;;chr5:77543897..77543911,-!p2@Hopx!1.91!148.13!Hopx;;chr1:137155026..137155042,-!p1@Elf3!1.86!395.30!Elf3;;chr9:8900459..8900489,+!p1@Pgr!1.82!65.38!Pgr;;chr19:5560600..5560617,-!p1@Ovol1!1.74!65.81!Ovol1;;chr12:75002335..75002352,+!p7@Hif1a!1.73!53.16!Hif1a;;chr13:53568104..53568156,-!p1@Msx2!1.68!68.60!Msx2;;chr9:8900409..8900425,+!p2@Pgr!1.66!45.23!Pgr;;chr12:74147689..74147711,-!p1@Six1!1.62!86.39!Six1;;chr11:121380611..121380625,-!p3@Zfp750!1.62!49.30!Zfp750;;chr12:75002357..75002378,+!p6@Hif1a!1.61!39.66!Hif1a;;chr6:86619104..86619119,-!p1@Mxd1!1.59!292.61!Mxd1;;chr11:78200071..78200100,-!p1@Foxn1!1.58!36.66!Foxn1;;chr9:8899828..8899855,+!p3@Pgr!1.51!31.30!Pgr;;chr11:94981424..94981439,+!p1@Dlx3!1.50!34.73!Dlx3;;chr6:6832076..6832092,-!p1@Dlx5!1.49!34.94!Dlx5;;chr13:40829137..40829205,-!p1@Tfap2a!1.49!33.66!Tfap2a;;chr2:160192793..160192809,-!p1@Mafb!1.46!401.51!Mafb;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.46!105.25!Ppp1r13l;;chr2:103264245..103264268,+!p2@Elf5!1.46!27.65!Elf5;;chr13:55932624..55932641,-!p2@Pitx1!1.46!27.65!Pitx1;;chr13:31650185..31650201,+!p1@Foxq1!1.45!91.75!Foxq1;;chr17:27865882..27865901,-!p1@Spdef!1.44!26.37!Spdef;;chr2:172375081..172375105,+!p1@Tfap2c!1.41!24.44!Tfap2c;;chr13:40826961..40827001,-!p4@Tfap2a!1.37!22.51!Tfap2a;;chr4:124805061..124805087,-!p1@Zc3h12a!1.32!59.81!Zc3h12a;;chr13:55937467..55937516,-!p3@Pitx1!1.32!19.72!Pitx1;;chr12:25257265..25257294,+!p2@Grhl1!1.31!19.51!Grhl1;;chr4:55545337..55545357,-!p1@Klf4!1.30!274.18!Klf4;;chr13:55937432..55937460,-!p4@Pitx1!1.30!18.86!Pitx1;;chr10:44178521..44178557,-!p1@Prdm1!1.28!32.16!Prdm1;;chr19:59533221..59533271,+!p1@Emx2!1.25!20.58!Emx2;;chr5:77543935..77543947,-!p4@Hopx!1.25!16.72!Hopx;;chr1:194979361..194979373,+!p2@Irf6!1.24!22.08!Irf6;;chr11:121381087..121381108,-!p4@Zfp750!1.24!16.51!Zfp750;;chr14:64562503..64562524,+!p1@Sox7!1.23!91.32!Sox7;;chr11:5761979..5761992,+!p2@Aebp1!1.23!32.37!Aebp1;;chr4:135129447..135129467,-!p2@Grhl3!1.23!19.29!Grhl3;;chr4:89354729..89354776,+!p1@Dmrta1!1.23!16.08!Dmrta1;;chr11:83664365..83664383,+!p1@Hnf1b!1.23!15.86!Hnf1b;;chr11:69468531..69468557,+!p1@Sox15!1.22!15.65!Sox15;;chr17:27866019..27866031,-!p2@Spdef!1.22!15.43!Spdef;;chr11:96143666..96143725,+!p1@Hoxb8!1.20!17.15!Hoxb8;;chr12:25257176..25257190,+!p3@Grhl1!1.20!16.72!Grhl1;;chr12:75002306..75002311,+!p10@Hif1a!1.20!14.79!Hif1a;;chr19:5560570..5560582,-!p2@Ovol1!1.17!13.93!Ovol1;;chr1:194979315..194979359,+!p1@Irf6!1.16!80.60!Irf6;;chr6:52190467..52190500,-!p1@Hoxa10!1.16!13.51!Hoxa10;;chr6:6831950..6831985,-!p2@Dlx5!1.15!14.58!Dlx5;;chr9:31720843..31720888,-!p1@Barx2!1.15!14.58!Barx2;;chr14:99697871..99697934,+!p1@Klf5!1.14!251.88!Klf5;;chr12:25257141..25257173,+!p1@Grhl1!1.14!26.58!Grhl1;;chr1:69732511..69732540,-!p2@Ikzf2!1.10!15.22!Ikzf2;;chr2:103264213..103264233,+!p1@Elf5!1.09!11.36!Elf5;;chr9:8900490..8900502,+!p4@Pgr!1.07!10.72!Pgr;;chr11:5761889..5761969,+!p1@Aebp1!1.06!441.60!Aebp1;;chr10:5636336..5636347,-!p9@Esr1!1.06!10.50!Esr1;;chr16:92826249..92826325,-!p1@Runx1!1.05!25.30!Runx1;;chr10:5636678..5636725,-!p6@Esr1!1.04!10.08!Esr1;;chr11:96153767..96153822,+!p1@Hoxb6!1.03!15.22!Hoxb6;;chr13:31650026..31650045,+!p2@Foxq1!1.02!16.29!Foxq1;;chr10:44178493..44178520,-!p3@Prdm1!1.02!13.51!Prdm1;;chr7:20162663..20162678,+!p1@Zfp296!1.02!12.65!Zfp296;;chr19:44831390..44831414,+!p1@Pax2!1.02!9.43!Pax2;;chr16:92697560..92697592,-!p2@Runx1!1.01!58.95!Runx1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.01!27.22!Bhlhe41;;chr4:55545051..55545110,-!p2@Klf4!1.01!11.58!Klf4;;chr15:102087880..102087927,-!p2@Rarg!1.00!21.22!Rarg;;chr15:50721640..50721654,-!p7@Trps1!0.98!13.72!Trps1;;chr6:52195795..52195825,-!p1@Hoxa11!0.97!8.36!Hoxa11;;chr11:98636531..98636559,-!p1@Nr1d1!0.96!47.59!Nr1d1;;chr12:75002422..75002429,+!p11@Hif1a!0.96!8.15!Hif1a;;chr10:44178375..44178390,-!p2@Prdm1!0.95!10.93!Prdm1;;chr6:51382677..51382783,+!p1@Nfe2l3!0.94!20.36!Nfe2l3;;chr5:32438894..32438908,+!p2@Fosl2!0.94!16.51!Fosl2;;chr6:52195763..52195792,-!p2@Hoxa11!0.94!7.72!Hoxa11;;chr18:76219118..76219155,+!p1@Zbtb7c!0.93!13.51!Zbtb7c;;chr15:79178060..79178074,+!p2@Maff!0.93!10.08!Maff;;chr10:22539932..22539956,-!p1@Tcf21!0.92!20.15!Tcf21;;chr15:103170516..103170531,-!p2@Zfp385a!0.92!18.01!Zfp385a;;chr3:30408603..30408668,-!p1@Mecom!0.92!17.58!Mecom;;chr2:115890469..115890485,-!p7@Meis2!0.92!12.00!Meis2;;chr4:89354785..89354801,+!p2@Dmrta1!0.92!7.29!Dmrta1;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.91!21.22!Tfcp2l1;;chr12:25257114..25257131,+!p4@Grhl1!0.90!9.22!Grhl1;;chr8:87502608..87502623,-!p1@Junb!0.89!114.47!Junb;;chr15:103170533..103170556,-!p1@Zfp385a!0.89!26.15!Zfp385a;;chr6:108610766..108610781,+!p2@Bhlhe40!0.89!12.43!Bhlhe40;;chr10:44178474..44178487,-!p4@Prdm1!0.87!9.43!Prdm1;;chr9:8900563..8900574,+!p5@Pgr!0.87!6.43!Pgr;;chr13:40825465..40825469,-!p2@Tfap2a!0.87!6.43!Tfap2a;;chr16:55822241..55822258,-!p1@Nfkbiz!0.86!207.29!Nfkbiz;;chr15:37162834..37162849,+!p2@Grhl2!0.86!7.50!Grhl2;;chr5:32438831..32438878,+!p1@Fosl2!0.85!67.10!Fosl2;;chr5:76733981..76734018,-!p3@Clock!0.85!13.51!Clock;;chr15:37162796..37162828,+!p1@Grhl2!0.85!10.50!Grhl2;;chr5:31271028..31271040,+!p1@Tcf23!0.85!6.00!Tcf23;;chr1:194979383..194979393,+!p3@Irf6!0.85!6.00!Irf6;;chr19:59532915..59532940,+!p5@Emx2!0.85!6.00!Emx2;;chr15:35225845..35225867,+!p1@Osr2!0.84!15.65!Osr2;;chr5:92391466..92391471,+!p2@Thap6!0.83!8.57!Thap6;;chr11:96147952..96147967,+!p1@Hoxb7!0.83!7.29!Hoxb7;;chr6:6831928..6831949,-!p3@Dlx5!0.83!5.79!Dlx5;;chr6:6813269..6813272,+!p2@Dlx6!0.83!5.79!Dlx6;;chr12:74147860..74147888,-!p2@Six1!0.83!5.79!Six1;;chr2:74517742..74517758,+!p2@Hoxd11!0.83!5.79!Hoxd11;;chr11:96145450..96145517,+!p2@Hoxb7!0.82!8.79!Hoxb7;;chr2:24331085..24331100,-!p1@Pax8!0.82!5.57!Pax8;;chr13:53568081..53568094,-!p3@Msx2!0.82!5.57!Msx2;;chr17:48025139..48025166,-!p8@Foxp4!0.81!6.43!Foxp4;;chr13:31898729..31898761,+!p1@Foxc1!0.80!13.93!Foxc1;;chr13:53568191..53568219,-!p2@Msx2!0.80!5.36!Msx2;;chr6:6812988..6813002,+!p3@Dlx6!0.80!5.36!Dlx6;;chr6:6812962..6812979,+!p1@Dlx6!0.80!5.36!Dlx6;;chr19:59534008..59534046,+!p7@Emx2!0.80!5.36!Emx2;;chr2:103264277..103264292,+!p3@Elf5!0.79!5.14!Elf5;;chr11:121381115..121381124,-!p5@Zfp750!0.79!5.14!Zfp750;;chr6:6831986..6832007,-!p4@Dlx5!0.79!5.14!Dlx5;;chr15:50721588..50721610,-!p1@Trps1!0.78!55.31!Trps1;;chr4:148178529..148178548,+!p3@Casz1!0.78!12.65!Casz1;;chr5:65194752..65194769,+!p1@Klf3!0.77!178.57!Klf3;;chr19:19185671..19185693,-!p1@Rorb!0.77!12.65!Rorb;;chr16:25802129..25802142,+!p3@Trp63!0.77!4.93!Trp63;;chr18:76219161..76219176,+!p4@Zbtb7c!0.76!6.43!Zbtb7c;;chr6:52184901..52184959,-!p2@Hoxa10!0.76!4.72!Hoxa10;;chr11:96143843..96143868,+!p3@Hoxb8!0.76!4.72!Hoxb8;;chr15:97738692..97738747,-!p1@Vdr!0.75!28.08!Vdr;;chr16:14705961..14705978,+!p2@Snai2!0.75!23.79!Snai2;;chr2:115890953..115890974,-!p6@Meis2!0.75!7.29!Meis2;;chr4:55545152..55545194,-!p3@Klf4!0.75!5.57!Klf4;;chr7:20408047..20408125,-!p1@Bcl3!0.74!56.81!Bcl3;;chr6:88148650..88148669,+!p1@Gata2!0.74!41.80!Gata2;;chr6:52210774..52210787,-!p1@Hoxa13!0.74!4.50!Hoxa13;;chr1:189432881..189432903,+!p2@Esrrg!0.74!4.50!Esrrg;;chr12:25257298..25257323,+!p5@Grhl1!0.74!4.50!Grhl1;;chr10:67599319..67599360,-!p2@Arid5b!0.73!54.02!Arid5b;;chr7:89137163..89137200,-!p1@Bnc1!0.73!5.36!Bnc1;;chr12:56593574..56593592,-!p1@Nfkbia!0.72!247.81!Nfkbia;;chr19:59534052..59534083,+!p8@Emx2!0.72!4.29!Emx2;;chr6:52190668..52190682,-!p3@Hoxa10!0.72!4.29!Hoxa10;;chr4:148178459..148178482,+!p4@Casz1!0.72!4.29!Casz1;;chr12:109242266..109242295,-!p1@Bcl11b!0.71!39.02!Bcl11b;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.71!7.50!Hoxb2;;chr14:79915502..79915514,+!p4@Elf1!0.71!6.65!Elf1;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.71!6.65!Ppp1r13l;;chr15:79178013..79178028,+!p3@Maff!0.71!5.57!Maff;;chr10:5734677..5734702,-!p4@Esr1!0.71!4.07!Esr1;;chr11:96880072..96880079,+!p1@Sp6!0.71!4.07!Sp6;;chr11:18918917..18918944,-!p1@Meis1!0.70!58.74!Meis1;;chr12:86940338..86940357,+!p1@Jdp2!0.70!45.02!Jdp2;;chr4:148275237..148275311,+!p2@Casz1!0.70!18.44!Casz1;;chr1:165243792..165243808,-!p1@Prrx1!0.70!15.65!Prrx1;;chr10:5734525..5734569,-!p3@Esr1!0.70!7.07!Esr1;;chr5:32438395..32438406,+!p3@Fosl2!0.70!6.43!Fosl2;;chr11:96143962..96144035,+!p2@Hoxb8!0.69!3.86!Hoxb8;;chr6:108610610..108610676,+!p1@Bhlhe40!0.68!215.44!Bhlhe40;;chr2:115891381..115891392,-!p5@Meis2!0.68!8.15!Meis2;;chr11:85646427..85646451,+!p4@Tbx2!0.68!7.07!Tbx2;;chr6:108610513..108610528,+!p3@Bhlhe40!0.68!6.22!Bhlhe40;;chr16:14705925..14705951,+!p1@Snai2!0.67!29.37!Snai2;;chr15:50720601..50720630,-!p2@Trps1!0.67!9.65!Trps1;;chr13:55932739..55932756,-!p5@Pitx1!0.67!3.64!Pitx1;;chr12:74147842..74147856,-!p3@Six1!0.67!3.64!Six1;;chr13:40827030..40827039,-!p12@Tfap2a!0.67!3.64!Tfap2a;;chr13:40824310..40824314,-!p6@Tfap2a!0.67!3.64!Tfap2a;;chr6:97757008..97757061,+!p1@Mitf!0.66!17.36!Mitf;;chr5:65213356..65213412,+!p6@Klf3!0.66!8.36!Klf3;;chr14:22807216..22807231,-!p3@Zfp503!0.66!6.65!Zfp503;;chr7:52960555..52960662,+!p1@Dbp!0.65!34.30!Dbp;;chr11:16908650..16908690,-!p1@Plek!0.65!24.65!Plek;;chr10:80600749..80600766,+!p2@Zbtb7a!0.65!21.01!Zbtb7a;;chr17:32506357..32506377,-!p3@Wiz!0.65!7.93!Wiz;;chr13:31898637..31898653,+!p2@Foxc1!0.65!6.65!Foxc1;;chr15:37163124..37163153,+!p3@Grhl2!0.65!3.43!Grhl2;;chrX:95345005..95345053,+!p1@Ar!0.65!3.43!Ar;;chr11:83664334..83664353,+!p2@Hnf1b!0.65!3.43!Hnf1b;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.64!121.33!Zfp706;;chr6:146744595..146744613,+!p2@Arntl2!0.64!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16!0.64!Hsf4;;chr3:30993641..30993651,+!p7@Skil!0.16!0.64!Skil;;chr3:29912058..29912071,-!p6@Mecom!0.16!0.64!Mecom;;chr18:35020854..35020869,+!p1@Egr1!0.15!48.45!Egr1;;chr11:98798983..98799049,+!p1@Rara!0.15!32.16!Rara;;chr11:6375995..6376105,-!p1@Purb!0.15!22.29!Purb;;chr2:83484658..83484678,+!p2@Zc3h15!0.15!19.72!Zc3h15;;chr6:48036529..48036657,-!p1@Zfp746!0.15!19.08!Zfp746;;chr16:84835146..84835186,+!p2@Gabpa!0.15!16.51!Gabpa;;chr8:72498160..72498214,-!p1@Gatad2a!0.15!15.86!Gatad2a;;chr12:9581262..9581282,+!p1@Osr1!0.15!14.58!Osr1;;chr7:4967068..4967111,+!p1@Zfp524!0.15!13.51!Zfp524;;chr5:143942400..143942474,-!p1@Rbak!0.15!12.86!Rbak;;chr12:25336211..25336274,+!p1@Klf11!0.15!12.65!Klf11;;chr18:82862265..82862325,-!p1@Zfp236!0.15!11.58!Zfp236;;chr12:100631220..100631300,-!p2@Foxn3!0.15!10.72!Foxn3;;chr15:100382390..100382441,-!p1@Tfcp2!0.15!7.93!Tfcp2;;chr17:34784132..34784161,+!p1@Atf6b!0.15!6.65!Atf6b;;chr11:23980664..23980706,+!p2@Bcl11a!0.15!4.72!Bcl11a;;chr1:13362515..13362538,-!p2@Ncoa2!0.15!3.64!Ncoa2;;chr15:57907991..57908010,-!p3@Zhx1,p6@9130401M01Rik!0.15!2.57!Zhx1;;chr13:67433461..67433489,-!p2@Zfp595!0.15!2.36!Zfp595;;chr8:81923398..81923409,-!p4@Smad1!0.15!2.36!Smad1;;chr6:72739234..72739256,-!p2@Tcf7l1!0.15!2.14!Tcf7l1;;chr1:64167811..64167826,-!p5@Klf7!0.15!1.93!Klf7;;chr19:46380235..46380277,+!p3@Nfkb2!0.15!1.93!Nfkb2;;chr9:63869802..63869815,-!p3@Smad6!0.15!1.71!Smad6;;chr1:193961837..193961849,-!p3@Rcor3!0.15!1.71!Rcor3;;chr14:56443806..56443848,+!p1@Nfatc4!0.15!1.71!Nfatc4;;chr15:81633139..81633152,+!p4@Tef!0.15!1.29!Tef;;chr7:134376558..134376587,+!p2@Zfp553!0.15!1.29!Zfp553;;chr2:120365588..120365602,-!p2@Zfp106!0.15!1.29!Zfp106;;chr16:55822638..55822669,-!p3@Nfkbiz!0.15!1.07!Nfkbiz;;chr8:87237711..87237727,-!p11@Nfix!0.15!0.86!Nfix;;chr7:52960780..52960793,+!p5@Dbp!0.15!0.64!Dbp;;chr1:52065508..52065522,+!p2@Stat4!0.15!0.64!Stat4;;chr11:100800621..100800633,-!p5@Stat3!0.15!0.64!Stat3;;chr18:36441100..36441113,+!p3@Pura!0.15!0.64!Pura;;chr18:76400957..76400968,+!p12@Smad2!0.15!0.43!Smad2;;chr16:43235969..43235989,+!p20@Zbtb20!0.15!0.43!Zbtb20;;chr19:12871064..12871095,-!p2@Zfp91!0.15!0.43!Zfp91;;chr17:14011529..14011544,+!p7@Mllt4!0.15!0.43!Mllt4;;chr19:12871044..12871058,-!p3@Zfp91!0.15!0.43!Zfp91;;chr16:43364012..43364030,+!p22@Zbtb20!0.15!0.43!Zbtb20;;chr16:14705668..14705683,+!p3@Snai2!0.15!0.43!Snai2;;chr17:28409059..28409076,+!p6@Ppard!0.15!0.43!Ppard;;chr18:5593345..5593349,+!p14@Zeb1!0.15!0.43!Zeb1;;chr2:115890864..115890869,-!p14@Meis2!0.15!0.43!Meis2;;chr1:52065530..52065548,+!p3@Stat4!0.15!0.43!Stat4;;chr2:147872074..147872079,-!p4@Foxa2!0.15!0.43!Foxa2;;chr2:133378740..133378753,+!p2@Bmp2!0.15!0.43!Bmp2;;chr2:103123759..103123777,-!p5@Ehf!0.15!0.43!Ehf;;chr9:98855692..98855710,+!p2@Foxl2!0.15!0.43!Foxl2;;chr9:43013917..43013968,-!p1@Pou2f3!0.15!0.43!Pou2f3;;chr9:63514596..63514603,-!p12@Smad3!0.15!0.43!Smad3;;chr8:77540157..77540170,+!p3@Hmgxb4!0.15!0.43!Hmgxb4;;chr7:19953851..19953902,+!p4@Ppp1r13l!0.15!0.43!Ppp1r13l;;chr13:40825785..40825798,-!p9@Tfap2a!0.15!0.43!Tfap2a;;chr13:40826119..40826131,-!p7@Tfap2a!0.15!0.43!Tfap2a;;chr14:17408052..17408073,-!p5@Rarb!0.15!0.43!Rarb;;chr12:120085778..120085784,+!p2@Sp8!0.15!0.43!Sp8;;chr14:17407857..17407875,-!p4@Rarb!0.15!0.43!Rarb;;chr15:75578748..75578752,-!p1@Mafa!0.15!0.43!Mafa;;chr13:40826100..40826108,-!p10@Tfap2a!0.15!0.43!Tfap2a;;chr14:18493470..18493477,+!p4@Thrb!0.15!0.43!Thrb;;chr12:120085700..120085711,+!p1@Sp8!0.15!0.43!Sp8;;chr11:96145362..96145389,+!p4@Hoxb7!0.15!0.43!Hoxb7;;chr10:30375665..30375674,-!p11@Ncoa7!0.15!0.43!Ncoa7;;chr11:96153467..96153473,+!p10@Hoxb6!0.15!0.43!Hoxb6;; | |expression_enrichment_score=chr2:103143336..103143367,-!p1@Ehf!2.49!489.40!Ehf;;chr16:25801993..25802014,+!p1@Trp63!2.13!133.12!Trp63;;chr12:75002389..75002406,+!p4@Hif1a!2.13!132.48!Hif1a;;chr13:55932591..55932622,-!p1@Pitx1!2.10!149.20!Pitx1;;chr11:121380640..121380655,-!p1@Zfp750!2.09!199.36!Zfp750;;chr10:5636354..5636373,-!p2@Esr1!2.09!121.76!Esr1;;chr2:103143315..103143328,-!p2@Ehf!2.08!118.97!Ehf;;chr4:135129538..135129558,-!p1@Grhl3!2.01!149.63!Grhl3;;chr11:121380594..121380609,-!p2@Zfp750!1.97!156.06!Zfp750;;chr10:5636374..5636421,-!p1@Esr1!1.95!109.11!Esr1;;chr5:77543897..77543911,-!p2@Hopx!1.91!148.13!Hopx;;chr1:137155026..137155042,-!p1@Elf3!1.86!395.30!Elf3;;chr9:8900459..8900489,+!p1@Pgr!1.82!65.38!Pgr;;chr19:5560600..5560617,-!p1@Ovol1!1.74!65.81!Ovol1;;chr12:75002335..75002352,+!p7@Hif1a!1.73!53.16!Hif1a;;chr13:53568104..53568156,-!p1@Msx2!1.68!68.60!Msx2;;chr9:8900409..8900425,+!p2@Pgr!1.66!45.23!Pgr;;chr12:74147689..74147711,-!p1@Six1!1.62!86.39!Six1;;chr11:121380611..121380625,-!p3@Zfp750!1.62!49.30!Zfp750;;chr12:75002357..75002378,+!p6@Hif1a!1.61!39.66!Hif1a;;chr6:86619104..86619119,-!p1@Mxd1!1.59!292.61!Mxd1;;chr11:78200071..78200100,-!p1@Foxn1!1.58!36.66!Foxn1;;chr9:8899828..8899855,+!p3@Pgr!1.51!31.30!Pgr;;chr11:94981424..94981439,+!p1@Dlx3!1.50!34.73!Dlx3;;chr6:6832076..6832092,-!p1@Dlx5!1.49!34.94!Dlx5;;chr13:40829137..40829205,-!p1@Tfap2a!1.49!33.66!Tfap2a;;chr2:160192793..160192809,-!p1@Mafb!1.46!401.51!Mafb;;chr7:19946556..19946611,+!p1@Ppp1r13l!1.46!105.25!Ppp1r13l;;chr2:103264245..103264268,+!p2@Elf5!1.46!27.65!Elf5;;chr13:55932624..55932641,-!p2@Pitx1!1.46!27.65!Pitx1;;chr13:31650185..31650201,+!p1@Foxq1!1.45!91.75!Foxq1;;chr17:27865882..27865901,-!p1@Spdef!1.44!26.37!Spdef;;chr2:172375081..172375105,+!p1@Tfap2c!1.41!24.44!Tfap2c;;chr13:40826961..40827001,-!p4@Tfap2a!1.37!22.51!Tfap2a;;chr4:124805061..124805087,-!p1@Zc3h12a!1.32!59.81!Zc3h12a;;chr13:55937467..55937516,-!p3@Pitx1!1.32!19.72!Pitx1;;chr12:25257265..25257294,+!p2@Grhl1!1.31!19.51!Grhl1;;chr4:55545337..55545357,-!p1@Klf4!1.30!274.18!Klf4;;chr13:55937432..55937460,-!p4@Pitx1!1.30!18.86!Pitx1;;chr10:44178521..44178557,-!p1@Prdm1!1.28!32.16!Prdm1;;chr19:59533221..59533271,+!p1@Emx2!1.25!20.58!Emx2;;chr5:77543935..77543947,-!p4@Hopx!1.25!16.72!Hopx;;chr1:194979361..194979373,+!p2@Irf6!1.24!22.08!Irf6;;chr11:121381087..121381108,-!p4@Zfp750!1.24!16.51!Zfp750;;chr14:64562503..64562524,+!p1@Sox7!1.23!91.32!Sox7;;chr11:5761979..5761992,+!p2@Aebp1!1.23!32.37!Aebp1;;chr4:135129447..135129467,-!p2@Grhl3!1.23!19.29!Grhl3;;chr4:89354729..89354776,+!p1@Dmrta1!1.23!16.08!Dmrta1;;chr11:83664365..83664383,+!p1@Hnf1b!1.23!15.86!Hnf1b;;chr11:69468531..69468557,+!p1@Sox15!1.22!15.65!Sox15;;chr17:27866019..27866031,-!p2@Spdef!1.22!15.43!Spdef;;chr11:96143666..96143725,+!p1@Hoxb8!1.20!17.15!Hoxb8;;chr12:25257176..25257190,+!p3@Grhl1!1.20!16.72!Grhl1;;chr12:75002306..75002311,+!p10@Hif1a!1.20!14.79!Hif1a;;chr19:5560570..5560582,-!p2@Ovol1!1.17!13.93!Ovol1;;chr1:194979315..194979359,+!p1@Irf6!1.16!80.60!Irf6;;chr6:52190467..52190500,-!p1@Hoxa10!1.16!13.51!Hoxa10;;chr6:6831950..6831985,-!p2@Dlx5!1.15!14.58!Dlx5;;chr9:31720843..31720888,-!p1@Barx2!1.15!14.58!Barx2;;chr14:99697871..99697934,+!p1@Klf5!1.14!251.88!Klf5;;chr12:25257141..25257173,+!p1@Grhl1!1.14!26.58!Grhl1;;chr1:69732511..69732540,-!p2@Ikzf2!1.10!15.22!Ikzf2;;chr2:103264213..103264233,+!p1@Elf5!1.09!11.36!Elf5;;chr9:8900490..8900502,+!p4@Pgr!1.07!10.72!Pgr;;chr11:5761889..5761969,+!p1@Aebp1!1.06!441.60!Aebp1;;chr10:5636336..5636347,-!p9@Esr1!1.06!10.50!Esr1;;chr16:92826249..92826325,-!p1@Runx1!1.05!25.30!Runx1;;chr10:5636678..5636725,-!p6@Esr1!1.04!10.08!Esr1;;chr11:96153767..96153822,+!p1@Hoxb6!1.03!15.22!Hoxb6;;chr13:31650026..31650045,+!p2@Foxq1!1.02!16.29!Foxq1;;chr10:44178493..44178520,-!p3@Prdm1!1.02!13.51!Prdm1;;chr7:20162663..20162678,+!p1@Zfp296!1.02!12.65!Zfp296;;chr19:44831390..44831414,+!p1@Pax2!1.02!9.43!Pax2;;chr16:92697560..92697592,-!p2@Runx1!1.01!58.95!Runx1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.01!27.22!Bhlhe41;;chr4:55545051..55545110,-!p2@Klf4!1.01!11.58!Klf4;;chr15:102087880..102087927,-!p2@Rarg!1.00!21.22!Rarg;;chr15:50721640..50721654,-!p7@Trps1!0.98!13.72!Trps1;;chr6:52195795..52195825,-!p1@Hoxa11!0.97!8.36!Hoxa11;;chr11:98636531..98636559,-!p1@Nr1d1!0.96!47.59!Nr1d1;;chr12:75002422..75002429,+!p11@Hif1a!0.96!8.15!Hif1a;;chr10:44178375..44178390,-!p2@Prdm1!0.95!10.93!Prdm1;;chr6:51382677..51382783,+!p1@Nfe2l3!0.94!20.36!Nfe2l3;;chr5:32438894..32438908,+!p2@Fosl2!0.94!16.51!Fosl2;;chr6:52195763..52195792,-!p2@Hoxa11!0.94!7.72!Hoxa11;;chr18:76219118..76219155,+!p1@Zbtb7c!0.93!13.51!Zbtb7c;;chr15:79178060..79178074,+!p2@Maff!0.93!10.08!Maff;;chr10:22539932..22539956,-!p1@Tcf21!0.92!20.15!Tcf21;;chr15:103170516..103170531,-!p2@Zfp385a!0.92!18.01!Zfp385a;;chr3:30408603..30408668,-!p1@Mecom!0.92!17.58!Mecom;;chr2:115890469..115890485,-!p7@Meis2!0.92!12.00!Meis2;;chr4:89354785..89354801,+!p2@Dmrta1!0.92!7.29!Dmrta1;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.91!21.22!Tfcp2l1;;chr12:25257114..25257131,+!p4@Grhl1!0.90!9.22!Grhl1;;chr8:87502608..87502623,-!p1@Junb!0.89!114.47!Junb;;chr15:103170533..103170556,-!p1@Zfp385a!0.89!26.15!Zfp385a;;chr6:108610766..108610781,+!p2@Bhlhe40!0.89!12.43!Bhlhe40;;chr10:44178474..44178487,-!p4@Prdm1!0.87!9.43!Prdm1;;chr9:8900563..8900574,+!p5@Pgr!0.87!6.43!Pgr;;chr13:40825465..40825469,-!p2@Tfap2a!0.87!6.43!Tfap2a;;chr16:55822241..55822258,-!p1@Nfkbiz!0.86!207.29!Nfkbiz;;chr15:37162834..37162849,+!p2@Grhl2!0.86!7.50!Grhl2;;chr5:32438831..32438878,+!p1@Fosl2!0.85!67.10!Fosl2;;chr5:76733981..76734018,-!p3@Clock!0.85!13.51!Clock;;chr15:37162796..37162828,+!p1@Grhl2!0.85!10.50!Grhl2;;chr5:31271028..31271040,+!p1@Tcf23!0.85!6.00!Tcf23;;chr1:194979383..194979393,+!p3@Irf6!0.85!6.00!Irf6;;chr19:59532915..59532940,+!p5@Emx2!0.85!6.00!Emx2;;chr15:35225845..35225867,+!p1@Osr2!0.84!15.65!Osr2;;chr5:92391466..92391471,+!p2@Thap6!0.83!8.57!Thap6;;chr11:96147952..96147967,+!p1@Hoxb7!0.83!7.29!Hoxb7;;chr6:6831928..6831949,-!p3@Dlx5!0.83!5.79!Dlx5;;chr6:6813269..6813272,+!p2@Dlx6!0.83!5.79!Dlx6;;chr12:74147860..74147888,-!p2@Six1!0.83!5.79!Six1;;chr2:74517742..74517758,+!p2@Hoxd11!0.83!5.79!Hoxd11;;chr11:96145450..96145517,+!p2@Hoxb7!0.82!8.79!Hoxb7;;chr2:24331085..24331100,-!p1@Pax8!0.82!5.57!Pax8;;chr13:53568081..53568094,-!p3@Msx2!0.82!5.57!Msx2;;chr17:48025139..48025166,-!p8@Foxp4!0.81!6.43!Foxp4;;chr13:31898729..31898761,+!p1@Foxc1!0.80!13.93!Foxc1;;chr13:53568191..53568219,-!p2@Msx2!0.80!5.36!Msx2;;chr6:6812988..6813002,+!p3@Dlx6!0.80!5.36!Dlx6;;chr6:6812962..6812979,+!p1@Dlx6!0.80!5.36!Dlx6;;chr19:59534008..59534046,+!p7@Emx2!0.80!5.36!Emx2;;chr2:103264277..103264292,+!p3@Elf5!0.79!5.14!Elf5;;chr11:121381115..121381124,-!p5@Zfp750!0.79!5.14!Zfp750;;chr6:6831986..6832007,-!p4@Dlx5!0.79!5.14!Dlx5;;chr15:50721588..50721610,-!p1@Trps1!0.78!55.31!Trps1;;chr4:148178529..148178548,+!p3@Casz1!0.78!12.65!Casz1;;chr5:65194752..65194769,+!p1@Klf3!0.77!178.57!Klf3;;chr19:19185671..19185693,-!p1@Rorb!0.77!12.65!Rorb;;chr16:25802129..25802142,+!p3@Trp63!0.77!4.93!Trp63;;chr18:76219161..76219176,+!p4@Zbtb7c!0.76!6.43!Zbtb7c;;chr6:52184901..52184959,-!p2@Hoxa10!0.76!4.72!Hoxa10;;chr11:96143843..96143868,+!p3@Hoxb8!0.76!4.72!Hoxb8;;chr15:97738692..97738747,-!p1@Vdr!0.75!28.08!Vdr;;chr16:14705961..14705978,+!p2@Snai2!0.75!23.79!Snai2;;chr2:115890953..115890974,-!p6@Meis2!0.75!7.29!Meis2;;chr4:55545152..55545194,-!p3@Klf4!0.75!5.57!Klf4;;chr7:20408047..20408125,-!p1@Bcl3!0.74!56.81!Bcl3;;chr6:88148650..88148669,+!p1@Gata2!0.74!41.80!Gata2;;chr6:52210774..52210787,-!p1@Hoxa13!0.74!4.50!Hoxa13;;chr1:189432881..189432903,+!p2@Esrrg!0.74!4.50!Esrrg;;chr12:25257298..25257323,+!p5@Grhl1!0.74!4.50!Grhl1;;chr10:67599319..67599360,-!p2@Arid5b!0.73!54.02!Arid5b;;chr7:89137163..89137200,-!p1@Bnc1!0.73!5.36!Bnc1;;chr12:56593574..56593592,-!p1@Nfkbia!0.72!247.81!Nfkbia;;chr19:59534052..59534083,+!p8@Emx2!0.72!4.29!Emx2;;chr6:52190668..52190682,-!p3@Hoxa10!0.72!4.29!Hoxa10;;chr4:148178459..148178482,+!p4@Casz1!0.72!4.29!Casz1;;chr12:109242266..109242295,-!p1@Bcl11b!0.71!39.02!Bcl11b;;chr11:96213288..96213332,+!p@chr11:96213288..96213332,+!0.71!7.50!Hoxb2;;chr14:79915502..79915514,+!p4@Elf1!0.71!6.65!Elf1;;chr7:19946535..19946550,+!p3@Ppp1r13l!0.71!6.65!Ppp1r13l;;chr15:79178013..79178028,+!p3@Maff!0.71!5.57!Maff;;chr10:5734677..5734702,-!p4@Esr1!0.71!4.07!Esr1;;chr11:96880072..96880079,+!p1@Sp6!0.71!4.07!Sp6;;chr11:18918917..18918944,-!p1@Meis1!0.70!58.74!Meis1;;chr12:86940338..86940357,+!p1@Jdp2!0.70!45.02!Jdp2;;chr4:148275237..148275311,+!p2@Casz1!0.70!18.44!Casz1;;chr1:165243792..165243808,-!p1@Prrx1!0.70!15.65!Prrx1;;chr10:5734525..5734569,-!p3@Esr1!0.70!7.07!Esr1;;chr5:32438395..32438406,+!p3@Fosl2!0.70!6.43!Fosl2;;chr11:96143962..96144035,+!p2@Hoxb8!0.69!3.86!Hoxb8;;chr6:108610610..108610676,+!p1@Bhlhe40!0.68!215.44!Bhlhe40;;chr2:115891381..115891392,-!p5@Meis2!0.68!8.15!Meis2;;chr11:85646427..85646451,+!p4@Tbx2!0.68!7.07!Tbx2;;chr6:108610513..108610528,+!p3@Bhlhe40!0.68!6.22!Bhlhe40;;chr16:14705925..14705951,+!p1@Snai2!0.67!29.37!Snai2;;chr15:50720601..50720630,-!p2@Trps1!0.67!9.65!Trps1;;chr13:55932739..55932756,-!p5@Pitx1!0.67!3.64!Pitx1;;chr12:74147842..74147856,-!p3@Six1!0.67!3.64!Six1;;chr13:40827030..40827039,-!p12@Tfap2a!0.67!3.64!Tfap2a;;chr13:40824310..40824314,-!p6@Tfap2a!0.67!3.64!Tfap2a;;chr6:97757008..97757061,+!p1@Mitf!0.66!17.36!Mitf;;chr5:65213356..65213412,+!p6@Klf3!0.66!8.36!Klf3;;chr14:22807216..22807231,-!p3@Zfp503!0.66!6.65!Zfp503;;chr7:52960555..52960662,+!p1@Dbp!0.65!34.30!Dbp;;chr11:16908650..16908690,-!p1@Plek!0.65!24.65!Plek;;chr10:80600749..80600766,+!p2@Zbtb7a!0.65!21.01!Zbtb7a;;chr17:32506357..32506377,-!p3@Wiz!0.65!7.93!Wiz;;chr13:31898637..31898653,+!p2@Foxc1!0.65!6.65!Foxc1;;chr15:37163124..37163153,+!p3@Grhl2!0.65!3.43!Grhl2;;chrX:95345005..95345053,+!p1@Ar!0.65!3.43!Ar;;chr11:83664334..83664353,+!p2@Hnf1b!0.65!3.43!Hnf1b;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.64!121.33!Zfp706;;chr6:146744595..146744613,+!p2@Arntl2!0.64!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| ||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0010316 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 39: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011438 | |is_a=EFO:0002091;;FF:0011438 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10502 | |||
|library_id_phase_based=2:CNhs10502 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;89 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;89 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/vagina%252c%2520adult.CNhs10502.89-27D5.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/vagina%252c%2520adult.CNhs10502.89-27D5.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/vagina%252c%2520adult.CNhs10502.89-27D5.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/vagina%252c%2520adult.CNhs10502.89-27D5.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/vagina%252c%2520adult.CNhs10502.89-27D5.mm9.nobarcode.rdna.fa.gz | |||
|name=vagina, adult | |name=vagina, adult | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 44: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10502,LSID648,release008,COMPLETED | |profile_hcage=CNhs10502,LSID648,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.145248123132783,0,0,0,0,0.0208867538010007,0.147808025287109,0,0,0,0,1.12097142618561e-05,0,0,0,0,0,0,-0.107542900771771,0,0,0,0,0,0.154952218286625,0,0,0,0,0,0.0101143672889883,0,0.348674371204667,0,0,0,0,0,0.097530210978616,-0.0407460403531483,0.0501968191114865,-0.667854755644601,-0.114916419723726,0,0,0,0,0,0,0,0,0,0,0,0.0843504501108034,0.202917082783196,0,0,0,0,0.0415034950279286,0,0.0696569650212278,0,0.0843504501108034,0,0.0256119201407331,-0.0949853038488843,0.275670318350908,0.0055825160585482,0,0.0379775419985211,0,0.0369680894652996,0.154952218286625,0,0,0.0167895805773672,-0.0698274417942446,0.190091035506729,0,0,0,0,0,0,-0.0411337708825408,-0.174621166856102,-0.0578655779147686,0.0180356625981624,0,0,0,0 | |||
|rna_box=27 | |rna_box=27 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 59: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 79: | Line 97: | ||
|top_motifs=FOS_FOS{B,L1}_JUN{B,D}:3.72379793502;BACH2:3.00945984319;ZNF148:2.96122818057;T:2.88257809221;TP53:2.57567971151;NFE2:2.08074094126;FOSL2:1.99449518834;FOXO1,3,4:1.95773722075;CDC5L:1.85185517245;TBP:1.70237632932;TFCP2:1.69423038652;SPZ1:1.63843892599;HAND1,2:1.47751951371;SNAI1..3:1.45347379108;TBX4,5:1.36149571197;ZEB1:1.27636194336;HMX1:1.26865995947;NFE2L2:1.2434511072;FOXN1:1.20854312995;CEBPA,B_DDIT3:1.1806239888;SP1:1.15776580977;NFE2L1:1.11854327654;MYOD1:1.08970853525;HOX{A4,D4}:1.08481284416;TFAP2{A,C}:1.0559253416;HLF:1.04954718409;NKX2-2,8:1.01118624589;SMAD1..7,9:0.992512966741;GLI1..3:0.976705359561;GCM1,2:0.953776929398;EP300:0.918766658093;EBF1:0.911677531071;NFATC1..3:0.897969005729;BPTF:0.86759112709;PITX1..3:0.862107504506;NKX3-2:0.824830864377;FOX{D1,D2}:0.820613960535;PAX5:0.809570076865;NANOG:0.783235718152;SRF:0.775352527037;TEAD1:0.736695943454;ATF6:0.683104702608;ATF2:0.659620811177;GTF2A1,2:0.643523226186;GTF2I:0.630647821713;STAT5{A,B}:0.60821866546;XCPE1{core}:0.604974045711;VSX1,2:0.598519836862;IRF7:0.572391945086;NFKB1_REL_RELA:0.503205459623;ETS1,2:0.493768833605;IKZF2:0.480037501601;MAFB:0.472037222708;MAZ:0.457580333678;CRX:0.452675812708;MYBL2:0.439200894294;ELF1,2,4:0.437729861002;RXRA_VDR{dimer}:0.421715892565;PDX1:0.406790603533;LEF1_TCF7_TCF7L1,2:0.400270075918;ADNP_IRX_SIX_ZHX:0.385323642117;POU5F1:0.358610989827;TEF:0.358235025362;HSF1,2:0.349596865346;SREBF1,2:0.33527043043;TFAP4:0.324865233751;SOX5:0.317769910664;DMAP1_NCOR{1,2}_SMARC:0.299454264024;NKX2-1,4:0.292663481185;FOXM1:0.285830146443;AIRE:0.265879087117;TOPORS:0.264812507736;RUNX1..3:0.264540375239;STAT2,4,6:0.262397675836;ATF4:0.250816855147;TLX1..3_NFIC{dimer}:0.246316838856;HOX{A5,B5}:0.226987401506;FOXP1:0.219623850923;ZNF238:0.216473234617;IRF1,2:0.213827468065;SPIB:0.20224868471;MYFfamily:0.19452769454;PRDM1:0.159853135601;TLX2:0.156826950615;SPI1:0.141672590117;ESR1:0.112478233534;NR3C1:0.0695093871286;NKX2-3_NKX2-5:0.0516460961893;HIF1A:0.0509268244924;KLF4:0.0242503541157;HIC1:0.0230159041017;TGIF1:0.020161950267;bHLH_family:-0.00781823044193;MZF1:-0.0374284187263;GZF1:-0.0418279297337;POU2F1..3:-0.0496086798957;REST:-0.0502309932113;HBP1_HMGB_SSRP1_UBTF:-0.0794194560709;NKX3-1:-0.0969318626228;NFIL3:-0.129136895844;DBP:-0.149281963837;GFI1:-0.156772112266;SOX2:-0.168638136093;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.175106148105;RREB1:-0.176663764601;NKX6-1,2:-0.185166898283;ELK1,4_GABP{A,B1}:-0.190932377079;ALX4:-0.199953487208;MED-1{core}:-0.240535258356;NHLH1,2:-0.24902679474;ZNF384:-0.262575710127;LHX3,4:-0.267244611091;EGR1..3:-0.282322006264;MTE{core}:-0.283430664404;AHR_ARNT_ARNT2:-0.300897301488;PAX4:-0.305078843723;ZBTB6:-0.323182092399;TFDP1:-0.326429827408;ZNF423:-0.345959545808;ATF5_CREB3:-0.346120405519;LMO2:-0.349853781426;PATZ1:-0.359002296914;MTF1:-0.385458912864;RFX2..5_RFXANK_RFXAP:-0.395984011051;HMGA1,2:-0.399782456943;MEF2{A,B,C,D}:-0.403959270008;STAT1,3:-0.411950686698;TFAP2B:-0.422641642703;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430402323228;PAX2:-0.435126349288;IKZF1:-0.435865842876;GFI1B:-0.442039041651;ZBTB16:-0.444045918545;BREu{core}:-0.449403780487;JUN:-0.449437741831;PRRX1,2:-0.456861570399;HNF1A:-0.460410657886;SOX17:-0.479253768605;CREB1:-0.488016926758;ZIC1..3:-0.503843166091;HNF4A_NR2F1,2:-0.53060527415;E2F1..5:-0.541260247657;ONECUT1,2:-0.548308964294;POU1F1:-0.564864572321;NR1H4:-0.570919013701;PAX8:-0.59805902594;ZNF143:-0.610721510726;POU6F1:-0.650989127747;TAL1_TCF{3,4,12}:-0.651264093911;NFIX:-0.656630932314;SOX{8,9,10}:-0.666583873657;MYB:-0.671548860533;FOX{F1,F2,J1}:-0.679506188716;RFX1:-0.720646008946;GATA4:-0.748218657738;POU3F1..4:-0.751019903338;FOXL1:-0.808672760566;ZFP161:-0.815189342626;RBPJ:-0.827250727852;UFEwm:-0.851498892446;AR:-0.85499955057;NRF1:-0.879362398965;HES1:-0.881717082988;GATA6:-0.885407983991;RXR{A,B,G}:-0.911594547695;PPARG:-0.932887367584;NR6A1:-0.956844120132;EN1,2:-0.958686515603;OCT4_SOX2{dimer}:-0.958808655073;ARID5B:-0.983296709417;FOX{I1,J2}:-1.00345596591;PAX1,9:-1.01661824826;FOXA2:-1.04658654466;CUX2:-1.0581432018;ALX1:-1.09548732728;CDX1,2,4:-1.10317004139;RORA:-1.1859222055;ESRRA:-1.2808406667;FOXQ1:-1.32852855003;NANOG{mouse}:-1.39967007414;PAX6:-1.50502940035;FOXD3:-1.53603605696;HOXA9_MEIS1:-1.53618356117;YY1:-1.59356438022;EVI1:-1.59421444384;NFY{A,B,C}:-1.70890399369;FOXP3:-1.7282108791;NR5A1,2:-1.82602020978;PBX1:-1.84869748245 | |top_motifs=FOS_FOS{B,L1}_JUN{B,D}:3.72379793502;BACH2:3.00945984319;ZNF148:2.96122818057;T:2.88257809221;TP53:2.57567971151;NFE2:2.08074094126;FOSL2:1.99449518834;FOXO1,3,4:1.95773722075;CDC5L:1.85185517245;TBP:1.70237632932;TFCP2:1.69423038652;SPZ1:1.63843892599;HAND1,2:1.47751951371;SNAI1..3:1.45347379108;TBX4,5:1.36149571197;ZEB1:1.27636194336;HMX1:1.26865995947;NFE2L2:1.2434511072;FOXN1:1.20854312995;CEBPA,B_DDIT3:1.1806239888;SP1:1.15776580977;NFE2L1:1.11854327654;MYOD1:1.08970853525;HOX{A4,D4}:1.08481284416;TFAP2{A,C}:1.0559253416;HLF:1.04954718409;NKX2-2,8:1.01118624589;SMAD1..7,9:0.992512966741;GLI1..3:0.976705359561;GCM1,2:0.953776929398;EP300:0.918766658093;EBF1:0.911677531071;NFATC1..3:0.897969005729;BPTF:0.86759112709;PITX1..3:0.862107504506;NKX3-2:0.824830864377;FOX{D1,D2}:0.820613960535;PAX5:0.809570076865;NANOG:0.783235718152;SRF:0.775352527037;TEAD1:0.736695943454;ATF6:0.683104702608;ATF2:0.659620811177;GTF2A1,2:0.643523226186;GTF2I:0.630647821713;STAT5{A,B}:0.60821866546;XCPE1{core}:0.604974045711;VSX1,2:0.598519836862;IRF7:0.572391945086;NFKB1_REL_RELA:0.503205459623;ETS1,2:0.493768833605;IKZF2:0.480037501601;MAFB:0.472037222708;MAZ:0.457580333678;CRX:0.452675812708;MYBL2:0.439200894294;ELF1,2,4:0.437729861002;RXRA_VDR{dimer}:0.421715892565;PDX1:0.406790603533;LEF1_TCF7_TCF7L1,2:0.400270075918;ADNP_IRX_SIX_ZHX:0.385323642117;POU5F1:0.358610989827;TEF:0.358235025362;HSF1,2:0.349596865346;SREBF1,2:0.33527043043;TFAP4:0.324865233751;SOX5:0.317769910664;DMAP1_NCOR{1,2}_SMARC:0.299454264024;NKX2-1,4:0.292663481185;FOXM1:0.285830146443;AIRE:0.265879087117;TOPORS:0.264812507736;RUNX1..3:0.264540375239;STAT2,4,6:0.262397675836;ATF4:0.250816855147;TLX1..3_NFIC{dimer}:0.246316838856;HOX{A5,B5}:0.226987401506;FOXP1:0.219623850923;ZNF238:0.216473234617;IRF1,2:0.213827468065;SPIB:0.20224868471;MYFfamily:0.19452769454;PRDM1:0.159853135601;TLX2:0.156826950615;SPI1:0.141672590117;ESR1:0.112478233534;NR3C1:0.0695093871286;NKX2-3_NKX2-5:0.0516460961893;HIF1A:0.0509268244924;KLF4:0.0242503541157;HIC1:0.0230159041017;TGIF1:0.020161950267;bHLH_family:-0.00781823044193;MZF1:-0.0374284187263;GZF1:-0.0418279297337;POU2F1..3:-0.0496086798957;REST:-0.0502309932113;HBP1_HMGB_SSRP1_UBTF:-0.0794194560709;NKX3-1:-0.0969318626228;NFIL3:-0.129136895844;DBP:-0.149281963837;GFI1:-0.156772112266;SOX2:-0.168638136093;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.175106148105;RREB1:-0.176663764601;NKX6-1,2:-0.185166898283;ELK1,4_GABP{A,B1}:-0.190932377079;ALX4:-0.199953487208;MED-1{core}:-0.240535258356;NHLH1,2:-0.24902679474;ZNF384:-0.262575710127;LHX3,4:-0.267244611091;EGR1..3:-0.282322006264;MTE{core}:-0.283430664404;AHR_ARNT_ARNT2:-0.300897301488;PAX4:-0.305078843723;ZBTB6:-0.323182092399;TFDP1:-0.326429827408;ZNF423:-0.345959545808;ATF5_CREB3:-0.346120405519;LMO2:-0.349853781426;PATZ1:-0.359002296914;MTF1:-0.385458912864;RFX2..5_RFXANK_RFXAP:-0.395984011051;HMGA1,2:-0.399782456943;MEF2{A,B,C,D}:-0.403959270008;STAT1,3:-0.411950686698;TFAP2B:-0.422641642703;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.430402323228;PAX2:-0.435126349288;IKZF1:-0.435865842876;GFI1B:-0.442039041651;ZBTB16:-0.444045918545;BREu{core}:-0.449403780487;JUN:-0.449437741831;PRRX1,2:-0.456861570399;HNF1A:-0.460410657886;SOX17:-0.479253768605;CREB1:-0.488016926758;ZIC1..3:-0.503843166091;HNF4A_NR2F1,2:-0.53060527415;E2F1..5:-0.541260247657;ONECUT1,2:-0.548308964294;POU1F1:-0.564864572321;NR1H4:-0.570919013701;PAX8:-0.59805902594;ZNF143:-0.610721510726;POU6F1:-0.650989127747;TAL1_TCF{3,4,12}:-0.651264093911;NFIX:-0.656630932314;SOX{8,9,10}:-0.666583873657;MYB:-0.671548860533;FOX{F1,F2,J1}:-0.679506188716;RFX1:-0.720646008946;GATA4:-0.748218657738;POU3F1..4:-0.751019903338;FOXL1:-0.808672760566;ZFP161:-0.815189342626;RBPJ:-0.827250727852;UFEwm:-0.851498892446;AR:-0.85499955057;NRF1:-0.879362398965;HES1:-0.881717082988;GATA6:-0.885407983991;RXR{A,B,G}:-0.911594547695;PPARG:-0.932887367584;NR6A1:-0.956844120132;EN1,2:-0.958686515603;OCT4_SOX2{dimer}:-0.958808655073;ARID5B:-0.983296709417;FOX{I1,J2}:-1.00345596591;PAX1,9:-1.01661824826;FOXA2:-1.04658654466;CUX2:-1.0581432018;ALX1:-1.09548732728;CDX1,2,4:-1.10317004139;RORA:-1.1859222055;ESRRA:-1.2808406667;FOXQ1:-1.32852855003;NANOG{mouse}:-1.39967007414;PAX6:-1.50502940035;FOXD3:-1.53603605696;HOXA9_MEIS1:-1.53618356117;YY1:-1.59356438022;EVI1:-1.59421444384;NFY{A,B,C}:-1.70890399369;FOXP3:-1.7282108791;NR5A1,2:-1.82602020978;PBX1:-1.84869748245 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:89-27D5;search_select_hide=table117:89-27D5 | |||
}} | }} |
Latest revision as of 19:21, 4 June 2020
Name: | vagina, adult |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10502 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10502
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0422 |
1001 | 0.141 |
1002 | -0.0422 |
1003 | 0.148 |
1004 | 0.216 |
1005 | 0.0455 |
1006 | -0.0101 |
1007 | -0.0195 |
1008 | 0 |
1009 | 0.169 |
101 | 0.0595 |
1010 | 0 |
1011 | -0.0459 |
1012 | 0 |
1013 | 0.0984 |
1014 | -0.0874 |
1015 | -0.147 |
1016 | -0.0393 |
1017 | 0.553 |
1018 | 0.94 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.014 |
1023 | 0 |
1024 | 0.0761 |
1025 | 0.0549 |
1026 | 0 |
1027 | -0.00502 |
1028 | 0.0844 |
1029 | 0.14 |
103 | 0.197 |
1030 | 0 |
1031 | 0.136 |
1032 | 0.0853 |
1033 | 0.00913 |
1034 | 0.0844 |
1035 | 0 |
1036 | 0.053 |
1037 | 0 |
1038 | -0.0466 |
1039 | -0.159 |
104 | 0 |
1040 | 0.137 |
1041 | 0.0844 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10502
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10502
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.778 |
10 | 10 | 0.667 |
100 | 100 | 0.364 |
101 | 101 | 0.778 |
102 | 102 | 0.263 |
103 | 103 | 0.408 |
104 | 104 | 0.235 |
105 | 105 | 0.23 |
106 | 106 | 6.44931e-4 |
107 | 107 | 0.0115 |
108 | 108 | 0.762 |
109 | 109 | 0.291 |
11 | 11 | 0.955 |
110 | 110 | 0.557 |
111 | 111 | 0.502 |
112 | 112 | 0.506 |
113 | 113 | 0.83 |
114 | 114 | 0.817 |
115 | 115 | 0.185 |
116 | 116 | 0.335 |
117 | 117 | 0.458 |
118 | 118 | 0.128 |
119 | 119 | 0.0135 |
12 | 12 | 0.514 |
120 | 120 | 0.838 |
121 | 121 | 0.267 |
122 | 122 | 0.237 |
123 | 123 | 0.568 |
124 | 124 | 0.712 |
125 | 125 | 0.553 |
126 | 126 | 0.268 |
127 | 127 | 0.585 |
128 | 128 | 0.00317 |
129 | 129 | 0.595 |
13 | 13 | 0.0461 |
130 | 130 | 0.496 |
131 | 131 | 0.26 |
132 | 132 | 0.722 |
133 | 133 | 0.275 |
134 | 134 | 0.831 |
135 | 135 | 0.555 |
136 | 136 | 0.123 |
137 | 137 | 0.14 |
138 | 138 | 0.0163 |
139 | 139 | 0.198 |
14 | 14 | 0.412 |
140 | 140 | 0.0484 |
141 | 141 | 0.483 |
142 | 142 | 0.839 |
143 | 143 | 0.804 |
144 | 144 | 0.659 |
145 | 145 | 0.247 |
146 | 146 | 0.157 |
147 | 147 | 0.186 |
148 | 148 | 0.492 |
149 | 149 | 0.272 |
15 | 15 | 0.703 |
150 | 150 | 0.349 |
151 | 151 | 0.403 |
152 | 152 | 0.00378 |
153 | 153 | 0.154 |
154 | 154 | 0.643 |
155 | 155 | 0.879 |
156 | 156 | 0.887 |
157 | 157 | 0.187 |
158 | 158 | 0.409 |
159 | 159 | 0.239 |
160 | 160 | 0.37 |
161 | 161 | 0.829 |
162 | 162 | 0.783 |
163 | 163 | 0.396 |
164 | 164 | 0.763 |
165 | 165 | 0.308 |
166 | 166 | 0.493 |
167 | 167 | 0.192 |
168 | 168 | 0.944 |
169 | 169 | 0.0432 |
17 | 17 | 0.0131 |
18 | 18 | 0.893 |
19 | 19 | 0.0655 |
2 | 2 | 0.164 |
20 | 20 | 0.531 |
21 | 21 | 0.00895 |
22 | 22 | 0.399 |
23 | 23 | 0.0723 |
24 | 24 | 0.0538 |
25 | 25 | 0.182 |
26 | 26 | 0.0405 |
27 | 27 | 0.987 |
28 | 28 | 0.543 |
29 | 29 | 0.924 |
3 | 3 | 0.641 |
30 | 30 | 0.061 |
31 | 31 | 0.965 |
32 | 32 | 0.846 |
33 | 33 | 0.922 |
34 | 34 | 0.937 |
35 | 35 | 0.167 |
36 | 36 | 0.179 |
37 | 37 | 0.159 |
38 | 38 | 0.786 |
39 | 39 | 0.375 |
4 | 4 | 0.79 |
40 | 40 | 0.374 |
41 | 41 | 0.348 |
42 | 42 | 0.437 |
43 | 43 | 0.262 |
44 | 44 | 0.316 |
45 | 45 | 0.12 |
46 | 46 | 0.22 |
47 | 47 | 0.868 |
48 | 48 | 0.937 |
49 | 49 | 0.372 |
5 | 5 | 0.827 |
50 | 50 | 0.518 |
51 | 51 | 0.59 |
52 | 52 | 0.101 |
53 | 53 | 0.174 |
54 | 54 | 0.376 |
55 | 55 | 0.82 |
56 | 56 | 0.553 |
57 | 57 | 0.702 |
58 | 58 | 0.481 |
59 | 59 | 0.196 |
6 | 6 | 0.18 |
60 | 60 | 0.126 |
61 | 61 | 0.258 |
62 | 62 | 0.786 |
63 | 63 | 0.298 |
64 | 64 | 0.582 |
65 | 65 | 0.676 |
66 | 66 | 0.575 |
67 | 67 | 0.698 |
68 | 68 | 0.373 |
69 | 69 | 0.893 |
7 | 7 | 0.769 |
70 | 70 | 0.0709 |
71 | 71 | 0.386 |
72 | 72 | 0.609 |
73 | 73 | 0.0122 |
74 | 74 | 0.83 |
75 | 75 | 0.566 |
76 | 76 | 0.108 |
77 | 77 | 0.0171 |
78 | 78 | 0.0632 |
79 | 79 | 0.833 |
8 | 8 | 0.717 |
80 | 80 | 0.0814 |
81 | 81 | 0.153 |
82 | 82 | 0.549 |
83 | 83 | 0.211 |
84 | 84 | 0.446 |
85 | 85 | 0.109 |
86 | 86 | 0.287 |
87 | 87 | 0.187 |
88 | 88 | 0.82 |
89 | 89 | 0.893 |
9 | 9 | 0.153 |
90 | 90 | 0.609 |
91 | 91 | 0.784 |
92 | 92 | 0.262 |
93 | 93 | 0.249 |
94 | 94 | 0.931 |
95 | 95 | 0.643 |
96 | 96 | 0.499 |
97 | 97 | 0.25 |
98 | 98 | 0.99 |
99 | 99 | 0.223 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10502
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011438 mouse vagina- adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000996 (vagina)
0003134 (female reproductive organ)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011438 (mouse vagina- adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)