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{{f5samples
 
{{f5samples
|id=FF:11812-124E3
+
|ancestors_in_anatomy_facet=UBERON:0000010,UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002005,UBERON:0002050,UBERON:0002410,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
|name=neurospheres - enteric neuron derived, biol_rep3
 
|sample_id=11812
 
|rna_tube_id=124E3
 
|rna_box=124
 
|rna_position=E3
 
|sample_cell_lot=
 
|sample_cell_catalog=
 
|sample_company=
 
|rna_lot_number=EN3
 
|rna_catalog_number=
 
|sample_species=Mouse (Mus musculus)
 
|sample_strain=
 
|sample_dev_stage=
 
|sample_tissue=ANATOMICAL SYSTEM
 
|sample_donor(cell lot)=
 
|sample_sex=
 
|sample_age=
 
|sample_ethnicity=
 
|rna_rin=
 
|rna_od260/230=
 
|rna_od260/280=
 
|sample_cell_type=
 
|sample_cell_line=
 
|sample_collaboration=Hideki Enomoto (RIKEN CDB)
 
|sample_experimental_condition=
 
|sample_disease=
 
|rna_sample_type=total RNA
 
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 
|rna_weight_ug=12
 
|rna_concentration=0.72
 
|sample_note=
 
|profile_hcage=CNhs13089,LSID1000,release012,COMPLETED
 
|profile_cagescan=,,,
 
|profile_srnaseq=,,,
 
|profile_rnaseq=,,,
 
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000031,CL:0000034,CL:0000047,CL:0000048,CL:0000055,CL:0000107,CL:0000133,CL:0000144,CL:0000211,CL:0000220,CL:0000221,CL:0000255,CL:0000393,CL:0000404,CL:0000540,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371
 
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000031,CL:0000034,CL:0000047,CL:0000048,CL:0000055,CL:0000107,CL:0000133,CL:0000144,CL:0000211,CL:0000220,CL:0000221,CL:0000255,CL:0000393,CL:0000404,CL:0000540,CL:0000548,CL:0000723,CL:0002319,CL:0002321,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000010,UBERON:0000061,UBERON:0000073,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0001016,UBERON:0001017,UBERON:0001062,UBERON:0002005,UBERON:0002050,UBERON:0002410,UBERON:0002532,UBERON:0004121,UBERON:0005423,UBERON:0005743
 
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
|sample_description=
+
|comment=
 +
|created_by=
 +
|creation_date=
 +
|def=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 66: Line 33:
 
|fonse_treatment=
 
|fonse_treatment=
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
|top_motifs=GZF1:2.68639874223;FOXQ1:2.09763626159;ONECUT1,2:2.08489986831;EN1,2:1.98407422472;PRRX1,2:1.84099429419;HBP1_HMGB_SSRP1_UBTF:1.81015207163;SOX2:1.62403810777;ZNF384:1.59647307727;DBP:1.56645410367;NKX2-1,4:1.45513406239;PBX1:1.36022440349;NANOG:1.34561972774;TFDP1:1.30764038837;POU6F1:1.26150152214;TEF:1.24488585327;ZNF143:1.23397743989;FOX{I1,J2}:1.21462516732;AHR_ARNT_ARNT2:1.21231765114;ZFP161:1.18009501422;JUN:1.17547643465;MTE{core}:1.16803461262;GFI1:1.14849452086;NKX3-1:1.1398809948;FOXD3:1.11526321892;MZF1:1.09404210481;SOX17:1.06404039165;POU3F1..4:1.04530509724;PDX1:1.04160214701;SREBF1,2:0.991885436433;TFAP2{A,C}:0.986906956229;IKZF1:0.955685723326;NRF1:0.954868664198;SOX{8,9,10}:0.946258462843;ZBTB16:0.932125030048;NHLH1,2:0.929244500006;HOXA9_MEIS1:0.911871079599;LEF1_TCF7_TCF7L1,2:0.879917814405;MED-1{core}:0.869542292289;TFAP2B:0.86040373847;ADNP_IRX_SIX_ZHX:0.858527711919;AIRE:0.824565801504;RORA:0.820500669713;OCT4_SOX2{dimer}:0.790173363566;FOXP3:0.776901671973;NFY{A,B,C}:0.764903505634;E2F1..5:0.748977074378;SOX5:0.721792958183;NKX3-2:0.707212442477;CREB1:0.703190759587;EP300:0.694910396827;TP53:0.679631258354;RXR{A,B,G}:0.678319294596;BREu{core}:0.677145842748;EGR1..3:0.656626350016;UFEwm:0.619654531828;NFE2L1:0.604638569713;IKZF2:0.579742230387;PAX8:0.572793986901;ATF2:0.554390422959;BPTF:0.550298650292;LHX3,4:0.542390076306;TAL1_TCF{3,4,12}:0.528032349812;MYFfamily:0.50303651395;HIC1:0.493493113884;VSX1,2:0.486678973129;REST:0.481758438305;ATF4:0.462583012663;GTF2I:0.450047204968;HAND1,2:0.435723277051;PATZ1:0.435552338827;GATA4:0.431214034299;PAX6:0.422122477984;HMGA1,2:0.385768427364;YY1:0.38341049615;RBPJ:0.382174163517;PAX5:0.375575440879;POU1F1:0.374932448754;POU2F1..3:0.336492958644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.334233797084;PAX4:0.332815634609;SP1:0.321134455137;ELK1,4_GABP{A,B1}:0.319440697491;HMX1:0.31596665943;RFX1:0.313242529665;POU5F1:0.299109575654;FOXP1:0.261412548239;ATF5_CREB3:0.230817372625;RFX2..5_RFXANK_RFXAP:0.214232360994;RREB1:0.208005527187;MAZ:0.196855886298;TLX2:0.190244692228;PITX1..3:0.174936145939;GFI1B:0.174450897021;EVI1:0.160414654989;CRX:0.157225502411;ZIC1..3:0.123684457579;ZBTB6:0.121812848777;FOX{D1,D2}:0.119420574171;XCPE1{core}:0.0948750943936;MYB:0.0696676661354;KLF4:0.0689287402211;ALX1:0.0650404463338;SMAD1..7,9:0.0353236696189;HSF1,2:0.0329703207109;TFCP2:6.83657887433e-05;GTF2A1,2:-0.00591695201128;PRDM1:-0.0414065627647;CDC5L:-0.0481695562713;TFAP4:-0.061995920816;STAT1,3:-0.0750815572953;TEAD1:-0.0832964295632;LMO2:-0.0946551588347;IRF7:-0.138285031211;TOPORS:-0.13899762323;STAT5{A,B}:-0.145171584414;NR1H4:-0.152404413007;NFIL3:-0.155871198366;ESRRA:-0.16102076196;HOX{A5,B5}:-0.176538184465;bHLH_family:-0.18333795649;FOXM1:-0.187917492504;T:-0.212914695025;ESR1:-0.214285758462;HES1:-0.222411885893;MTF1:-0.250205995385;FOS_FOS{B,L1}_JUN{B,D}:-0.256129346967;NFE2:-0.296102612709;CUX2:-0.311565219266;ZNF423:-0.338793106501;NANOG{mouse}:-0.344896148825;HIF1A:-0.365504592388;HOX{A4,D4}:-0.370595288676;ZNF238:-0.370618452527;ZNF148:-0.371368051694;BACH2:-0.385241888332;AR:-0.425904952839;DMAP1_NCOR{1,2}_SMARC:-0.443626406135;FOSL2:-0.443991608667;RUNX1..3:-0.448252346765;FOXO1,3,4:-0.452004307801;NFATC1..3:-0.481476350535;SRF:-0.495274519103;ALX4:-0.496044404674;MYBL2:-0.501758030756;NFIX:-0.505778735329;FOXL1:-0.518513579794;TLX1..3_NFIC{dimer}:-0.52581008693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.533856259157;SPIB:-0.540318504412;HNF4A_NR2F1,2:-0.545138388327;CDX1,2,4:-0.548834779342;HNF1A:-0.605461059532;NKX2-3_NKX2-5:-0.617657949773;ELF1,2,4:-0.62034977388;ATF6:-0.621275509985;MEF2{A,B,C,D}:-0.63545185959;EBF1:-0.638498831437;TGIF1:-0.646890680374;IRF1,2:-0.64735212887;NKX2-2,8:-0.682399900629;FOXA2:-0.685772115031;NFKB1_REL_RELA:-0.693436638186;RXRA_VDR{dimer}:-0.709996848267;CEBPA,B_DDIT3:-0.710054977098;MYOD1:-0.712202283631;FOXN1:-0.753090998516;NKX6-1,2:-0.755524752704;PAX2:-0.757831426139;SPI1:-0.81186850013;NR3C1:-0.828860574126;FOX{F1,F2,J1}:-0.85190909898;ETS1,2:-0.854816850065;MAFB:-0.860101284754;HLF:-0.911621873168;NFE2L2:-0.948540858094;SPZ1:-1.02171204383;ARID5B:-1.02693201335;GLI1..3:-1.04263384148;STAT2,4,6:-1.07101472892;TBP:-1.09408537852;PAX1,9:-1.09519537403;NR5A1,2:-1.12544956633;GATA6:-1.12573292177;SNAI1..3:-1.15223533579;GCM1,2:-1.17869143312;PPARG:-1.28382588225;ZEB1:-1.30850178413;NR6A1:-1.37275053649;TBX4,5:-1.80081229811
 
|comment=
 
|created_by=
 
|creation_date=
 
|def=
 
 
|has_quality=
 
|has_quality=
 +
|id=FF:11812-124E3
 
|is_a=EFO:0002091;;FF:0000002;;FF:0000103;;FF:0011142
 
|is_a=EFO:0002091;;FF:0000002;;FF:0000103;;FF:0011142
 +
|name=neurospheres - enteric neuron derived, biol_rep3
 
|namespace=
 
|namespace=
 
|part_of=UBERON:0002005
 
|part_of=UBERON:0002005
 +
|profile_cagescan=,,,
 +
|profile_hcage=CNhs13089,LSID1000,release012,COMPLETED
 +
|profile_rnaseq=,,,
 +
|profile_srnaseq=,,,
 +
|rna_box=124
 +
|rna_catalog_number=
 +
|rna_concentration=0.72
 +
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
 +
|rna_lot_number=EN3
 +
|rna_od260/230=
 +
|rna_od260/280=
 +
|rna_position=E3
 +
|rna_rin=
 +
|rna_sample_type=total RNA
 +
|rna_tube_id=124E3
 +
|rna_weight_ug=12
 +
|sample_age=
 +
|sample_cell_catalog=
 +
|sample_cell_line=
 +
|sample_cell_lot=
 +
|sample_cell_type=
 +
|sample_collaboration=Hideki Enomoto (RIKEN CDB)
 +
|sample_company=
 +
|sample_description=
 +
|sample_dev_stage=
 +
|sample_disease=
 +
|sample_donor(cell lot)=
 +
|sample_ethnicity=
 +
|sample_experimental_condition=
 +
|sample_id=11812
 +
|sample_note=
 +
|sample_sex=
 +
|sample_species=Mouse (Mus musculus)
 +
|sample_strain=
 +
|sample_tissue=ANATOMICAL SYSTEM
 +
|top_motifs=GZF1:2.68639874223;FOXQ1:2.09763626159;ONECUT1,2:2.08489986831;EN1,2:1.98407422472;PRRX1,2:1.84099429419;HBP1_HMGB_SSRP1_UBTF:1.81015207163;SOX2:1.62403810777;ZNF384:1.59647307727;DBP:1.56645410367;NKX2-1,4:1.45513406239;PBX1:1.36022440349;NANOG:1.34561972774;TFDP1:1.30764038837;POU6F1:1.26150152214;TEF:1.24488585327;ZNF143:1.23397743989;FOX{I1,J2}:1.21462516732;AHR_ARNT_ARNT2:1.21231765114;ZFP161:1.18009501422;JUN:1.17547643465;MTE{core}:1.16803461262;GFI1:1.14849452086;NKX3-1:1.1398809948;FOXD3:1.11526321892;MZF1:1.09404210481;SOX17:1.06404039165;POU3F1..4:1.04530509724;PDX1:1.04160214701;SREBF1,2:0.991885436433;TFAP2{A,C}:0.986906956229;IKZF1:0.955685723326;NRF1:0.954868664198;SOX{8,9,10}:0.946258462843;ZBTB16:0.932125030048;NHLH1,2:0.929244500006;HOXA9_MEIS1:0.911871079599;LEF1_TCF7_TCF7L1,2:0.879917814405;MED-1{core}:0.869542292289;TFAP2B:0.86040373847;ADNP_IRX_SIX_ZHX:0.858527711919;AIRE:0.824565801504;RORA:0.820500669713;OCT4_SOX2{dimer}:0.790173363566;FOXP3:0.776901671973;NFY{A,B,C}:0.764903505634;E2F1..5:0.748977074378;SOX5:0.721792958183;NKX3-2:0.707212442477;CREB1:0.703190759587;EP300:0.694910396827;TP53:0.679631258354;RXR{A,B,G}:0.678319294596;BREu{core}:0.677145842748;EGR1..3:0.656626350016;UFEwm:0.619654531828;NFE2L1:0.604638569713;IKZF2:0.579742230387;PAX8:0.572793986901;ATF2:0.554390422959;BPTF:0.550298650292;LHX3,4:0.542390076306;TAL1_TCF{3,4,12}:0.528032349812;MYFfamily:0.50303651395;HIC1:0.493493113884;VSX1,2:0.486678973129;REST:0.481758438305;ATF4:0.462583012663;GTF2I:0.450047204968;HAND1,2:0.435723277051;PATZ1:0.435552338827;GATA4:0.431214034299;PAX6:0.422122477984;HMGA1,2:0.385768427364;YY1:0.38341049615;RBPJ:0.382174163517;PAX5:0.375575440879;POU1F1:0.374932448754;POU2F1..3:0.336492958644;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.334233797084;PAX4:0.332815634609;SP1:0.321134455137;ELK1,4_GABP{A,B1}:0.319440697491;HMX1:0.31596665943;RFX1:0.313242529665;POU5F1:0.299109575654;FOXP1:0.261412548239;ATF5_CREB3:0.230817372625;RFX2..5_RFXANK_RFXAP:0.214232360994;RREB1:0.208005527187;MAZ:0.196855886298;TLX2:0.190244692228;PITX1..3:0.174936145939;GFI1B:0.174450897021;EVI1:0.160414654989;CRX:0.157225502411;ZIC1..3:0.123684457579;ZBTB6:0.121812848777;FOX{D1,D2}:0.119420574171;XCPE1{core}:0.0948750943936;MYB:0.0696676661354;KLF4:0.0689287402211;ALX1:0.0650404463338;SMAD1..7,9:0.0353236696189;HSF1,2:0.0329703207109;TFCP2:6.83657887433e-05;GTF2A1,2:-0.00591695201128;PRDM1:-0.0414065627647;CDC5L:-0.0481695562713;TFAP4:-0.061995920816;STAT1,3:-0.0750815572953;TEAD1:-0.0832964295632;LMO2:-0.0946551588347;IRF7:-0.138285031211;TOPORS:-0.13899762323;STAT5{A,B}:-0.145171584414;NR1H4:-0.152404413007;NFIL3:-0.155871198366;ESRRA:-0.16102076196;HOX{A5,B5}:-0.176538184465;bHLH_family:-0.18333795649;FOXM1:-0.187917492504;T:-0.212914695025;ESR1:-0.214285758462;HES1:-0.222411885893;MTF1:-0.250205995385;FOS_FOS{B,L1}_JUN{B,D}:-0.256129346967;NFE2:-0.296102612709;CUX2:-0.311565219266;ZNF423:-0.338793106501;NANOG{mouse}:-0.344896148825;HIF1A:-0.365504592388;HOX{A4,D4}:-0.370595288676;ZNF238:-0.370618452527;ZNF148:-0.371368051694;BACH2:-0.385241888332;AR:-0.425904952839;DMAP1_NCOR{1,2}_SMARC:-0.443626406135;FOSL2:-0.443991608667;RUNX1..3:-0.448252346765;FOXO1,3,4:-0.452004307801;NFATC1..3:-0.481476350535;SRF:-0.495274519103;ALX4:-0.496044404674;MYBL2:-0.501758030756;NFIX:-0.505778735329;FOXL1:-0.518513579794;TLX1..3_NFIC{dimer}:-0.52581008693;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.533856259157;SPIB:-0.540318504412;HNF4A_NR2F1,2:-0.545138388327;CDX1,2,4:-0.548834779342;HNF1A:-0.605461059532;NKX2-3_NKX2-5:-0.617657949773;ELF1,2,4:-0.62034977388;ATF6:-0.621275509985;MEF2{A,B,C,D}:-0.63545185959;EBF1:-0.638498831437;TGIF1:-0.646890680374;IRF1,2:-0.64735212887;NKX2-2,8:-0.682399900629;FOXA2:-0.685772115031;NFKB1_REL_RELA:-0.693436638186;RXRA_VDR{dimer}:-0.709996848267;CEBPA,B_DDIT3:-0.710054977098;MYOD1:-0.712202283631;FOXN1:-0.753090998516;NKX6-1,2:-0.755524752704;PAX2:-0.757831426139;SPI1:-0.81186850013;NR3C1:-0.828860574126;FOX{F1,F2,J1}:-0.85190909898;ETS1,2:-0.854816850065;MAFB:-0.860101284754;HLF:-0.911621873168;NFE2L2:-0.948540858094;SPZ1:-1.02171204383;ARID5B:-1.02693201335;GLI1..3:-1.04263384148;STAT2,4,6:-1.07101472892;TBP:-1.09408537852;PAX1,9:-1.09519537403;NR5A1,2:-1.12544956633;GATA6:-1.12573292177;SNAI1..3:-1.15223533579;GCM1,2:-1.17869143312;PPARG:-1.28382588225;ZEB1:-1.30850178413;NR6A1:-1.37275053649;TBX4,5:-1.80081229811
 
}}
 
}}

Revision as of 06:02, 21 March 2012


Name:neurospheres - enteric neuron derived, biol_rep3
Species:Mouse (Mus musculus)
Library ID:{{{library_id}}}
Sample type:{{{sample_category}}}
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueANATOMICAL SYSTEM
dev stageNA
sexNA
ageNA
cell typeNA
cell lineNA
companyNA
collaborationHideki Enomoto (RIKEN CDB)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberEN3
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]





Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs13089

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0.0847
10 0
100 0.0847
1000 --0.0355
1001 0.0179
1002 --0.102
1003 --0.0162
1004 0
1005 --0.0389
1006 0.127
1007 --0.0212
1008 0
1009 --0.0572
101 --0.0382
1010 0
1011 --0.0279
1012 0
1013 --0.0497
1014 --0.00982
1015 0.132
1016 0.382
1017 0
1018 0
1019 0
102 0
1020 0.528
1021 0.201
1022 --0.315
1023 0
1024 0
1025 --0.0611
1026 0
1027 0.468
1028 0
1029 --0.0213
103 --0.0719
1030 0
1031 0.359
1032 0.0414
1033 0.141
1034 0
1035 0
1036 0.0291
1037 0
1038 --0.00837
1039 --0.241
104 0
1040 0.243
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data
no result for this sample


TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13089

Jaspar motif P-value
MA0002.2 1.42633e-5
MA0003.1 0.0215
MA0004.1 0.903
MA0006.1 0.371
MA0007.1 0.469
MA0009.1 0.108
MA0014.1 0.677
MA0017.1 3.81433e-6
MA0018.2 0.00639
MA0019.1 0.435
MA0024.1 0.0022
MA0025.1 0.629
MA0027.1 0.19
MA0028.1 0.799
MA0029.1 0.178
MA0030.1 0.548
MA0031.1 0.103
MA0035.2 8.35721e-4
MA0038.1 0.0561
MA0039.2 0.086
MA0040.1 0.776
MA0041.1 0.487
MA0042.1 0.778
MA0043.1 0.123
MA0046.1 1.64183e-13
MA0047.2 4.55204e-4
MA0048.1 0.495
MA0050.1 0.00453
MA0051.1 0.0524
MA0052.1 6.52843e-5
MA0055.1 0.545
MA0057.1 0.0923
MA0058.1 0.843
MA0059.1 0.351
MA0060.1 3.58721e-6
MA0061.1 0.0304
MA0062.2 0.524
MA0065.2 3.09663e-6
MA0066.1 0.131
MA0067.1 0.709
MA0068.1 0.334
MA0069.1 0.513
MA0070.1 0.0356
MA0071.1 0.131
MA0072.1 0.508
MA0073.1 0.919
MA0074.1 0.554
MA0076.1 0.551
MA0077.1 0.0497
MA0078.1 0.383
MA0079.2 0.675
MA0080.2 6.66875e-11
MA0081.1 0.465
MA0083.1 0.699
MA0084.1 0.429
MA0087.1 0.834
MA0088.1 0.917
MA0090.1 0.518
MA0091.1 0.627
MA0092.1 0.827
MA0093.1 0.954
MA0099.2 0.0166
MA0100.1 0.524
MA0101.1 0.157
MA0102.2 0.676
MA0103.1 0.0017
MA0104.2 0.849
MA0105.1 5.77945e-4
MA0106.1 0.949
MA0107.1 0.0616
MA0108.2 0.00251
MA0111.1 0.877
MA0112.2 5.08362e-6
MA0113.1 0.165
MA0114.1 3.29012e-5
MA0115.1 0.0148
MA0116.1 0.00161
MA0117.1 0.647
MA0119.1 0.093
MA0122.1 0.75
MA0124.1 0.848
MA0125.1 0.115
MA0131.1 0.53
MA0135.1 0.038
MA0136.1 3.46439e-8
MA0137.2 0.468
MA0138.2 0.465
MA0139.1 0.126
MA0140.1 6.02301e-5
MA0141.1 0.00276
MA0142.1 0.058
MA0143.1 0.398
MA0144.1 0.248
MA0145.1 0.0402
MA0146.1 0.527
MA0147.1 0.677
MA0148.1 0.00427
MA0149.1 0.962
MA0150.1 0.0595
MA0152.1 0.461
MA0153.1 1.84587e-13
MA0154.1 0.00356
MA0155.1 0.512
MA0156.1 1.59173e-4
MA0157.1 0.044
MA0159.1 0.0644
MA0160.1 0.0221
MA0162.1 0.185
MA0163.1 0.00383
MA0164.1 0.691
MA0258.1 0.00605
MA0259.1 0.955



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13089

Novel motif P-value
1 0.145
10 0.0923
100 0.961
101 0.72
102 0.987
103 0.128
104 0.577
105 0.045
106 0.0235
107 0.105
108 0.929
109 0.0419
11 0.121
110 0.13
111 0.00912
112 0.0262
113 0.553
114 0.0384
115 0.791
116 0.445
117 0.249
118 0.357
119 0.032
12 0.485
120 0.293
121 0.281
122 0.367
123 0.843
124 0.281
125 0.835
126 0.471
127 0.142
128 0.0645
129 0.153
13 0.0137
130 0.658
131 0.397
132 0.434
133 0.9
134 0.661
135 0.633
136 0.86
137 0.381
138 0.966
139 0.0593
14 0.553
140 0.0149
141 0.196
142 0.747
143 0.472
144 0.973
145 0.21
146 0.418
147 0.867
148 0.46
149 0.132
15 0.108
150 0.338
151 0.321
152 0.0813
153 0.873
154 0.87
155 0.685
156 7.07185e-14
157 0.31
158 0.608
159 0.405
160 0.148
161 0.113
162 0.899
163 0.896
164 0.109
165 0.0682
166 0.639
167 0.36
168 0.526
169 0.0123
17 0.0493
18 0.786
19 0.171
2 0.57
20 0.7
21 0.324
22 0.272
23 0.214
24 0.0953
25 0.395
26 0.0243
27 0.386
28 0.424
29 0.447
3 0.0738
30 0.666
31 0.782
32 0.102
33 0.471
34 0.295
35 0.901
36 0.552
37 0.0627
38 0.204
39 0.237
4 0.576
40 0.325
41 0.44
42 0.283
43 0.186
44 0.212
45 0.302
46 0.158
47 0.232
48 0.153
49 0.151
5 0.25
50 0.422
51 0.508
52 0.331
53 0.436
54 0.472
55 0.688
56 0.548
57 0.603
58 0.128
59 0.0337
6 0.615
60 0.0869
61 0.283
62 0.0602
63 0.0664
64 0.472
65 0.105
66 0.69
67 0.879
68 0.39
69 0.85
7 0.0561
70 0.00179
71 0.0737
72 0.304
73 0.115
74 0.848
75 0.134
76 0.623
77 0.14
78 0.0337
79 0.329
8 0.126
80 0.684
81 0.691
82 0.0522
83 0.102
84 0.961
85 0.139
86 0.232
87 0.719
88 0.671
89 0.025
9 0.414
90 0.51
91 0.342
92 0.211
93 0.578
94 0.518
95 0.111
96 0.554
97 0.727
98 0.189
99 0.268



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13089


FANTOM5 (FF) ontology


Direct parent terms

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000031 (neuroblast)
0000034 (stem cell)
0000047 (neuronal stem cell)
0000048 (multi fate stem cell)
0000055 (non-terminally differentiated cell)
0000107 (autonomic neuron)
0000133 (neurectodermal cell)
0000211 (electrically active cell)
0000221 (ectodermal cell)
0000255 (eukaryotic cell)
0000393 (electrically responsive cell)
0000404 (electrically signaling cell)
0000540 (neuron)
0000548 (animal cell)
0000723 (somatic stem cell)
0002319 (neural cell)
0002321 (embryonic cell)
0002371 (somatic cell)

UBERON: Anatomy
0000010 (peripheral nervous system)
0000061 (anatomical structure)
0000073 (regional part of nervous system)
0000465 (material anatomical entity)
0000467 (anatomical system)
0000468 (multi-cellular organism)
0000480 (anatomical group)
0000922 (embryo)
0000923 (germ layer)
0000924 (ectoderm)
0001016 (nervous system)
0001017 (central nervous system)
0001062 (anatomical entity)
0002005 (enteric nervous system)
0002050 (embryonic structure)
0002410 (autonomic nervous system)
0002532 (epiblast (generic))
0004121 (ectoderm-derived structure)
0005423 (developing anatomical structure)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

NA