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{{f5samples
{{f5samples
|id=FF:12724-135G6
|DRA_sample_Accession=CAGE@SAMD00005266
|name=H9 Embryonic Stem cells, biol_rep2 (H9ES-2)
|accession_numbers=CAGE;DRX008586;DRR009458;DRZ000883;DRZ002268;DRZ012233;DRZ013618
|sample_id=12724
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000061,UBERON:0000465,UBERON:0001062
|rna_tube_id=135G6
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002321,CL:0000255,CL:0000034,CL:0002322
|rna_box=135
|rna_position=G6
|sample_cell_lot=
|sample_cell_catalog=
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=unclassifiable
|sample_donor(cell lot)=rep2
|sample_sex=female
|sample_age=
|sample_ethnicity=
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=stem cell
|sample_cell_line=H9
|sample_collaboration=Susan Zabierowski (Wistar Institute)
|sample_experimental_condition=Human ES cell differentiation to melanocyte
|sample_disease=
|rna_sample_type=
|rna_extraction_protocol=
|rna_weight_ug=7.00
|rna_concentration=0.73
|sample_note=
|profile_hcage=CNhs12824,LSID972,release012,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000144,CL:0000255,CL:0000548,CL:0002321,CL:0002322
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000465,UBERON:0000468,UBERON:0000922,UBERON:0001062
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101581,FF:0000343,FF:0000350,FF:0000400,FF:0100669,FF:0000592
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002322
|fonse_cell_line=FF:0100669
|fonse_cell_line=FF:0100669
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|fonse_cell_line_closure=FF:0100669
Line 66: Line 40:
|fonse_treatment=FF:0000343,FF:0000592,FF:12724-135G6
|fonse_treatment=FF:0000343,FF:0000592,FF:12724-135G6
|fonse_treatment_closure=FF:0000343,FF:0000592,FF:12724-135G6
|fonse_treatment_closure=FF:0000343,FF:0000592,FF:12724-135G6
|top_motifs=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.timecourse.hCAGE/H9%2520Embryonic%2520Stem%2520cells%252c%2520biol_rep2%2520%2528H9ES-2%2529.CNhs12824.12724-135G6.hg38.nobarcode.ctss.bed.gz
|id=FF:12724-135G6
|is_a=EFO:0002091;;FF:0000592
|is_obsolete=
|library_id=CNhs12824
|library_id_phase_based=2:CNhs12824
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12724
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12724
|name=H9 Embryonic Stem cells, biol_rep2 (H9ES-2)
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12824,LSID972,release012,COMPLETED
|profile_rnaseq=
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|rna_box=135
|rna_catalog_number=
|rna_concentration=0.73
|rna_extraction_protocol=
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=G6
|rna_rin=
|rna_sample_type=
|rna_tube_id=135G6
|rna_weight_ug=7
|sample_age=
|sample_category=time courses
|sample_cell_catalog=
|sample_cell_line=H9
|sample_cell_lot=
|sample_cell_type=stem cell
|sample_collaboration=Susan Zabierowski (Wistar Institute)
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=rep2
|sample_ethnicity=
|sample_experimental_condition=Human ES cell differentiation to melanocyte
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;9.92172463991287e-292!GO:0043226;organelle;1.48906508007988e-244!GO:0043229;intracellular organelle;6.24944775078078e-244!GO:0043231;intracellular membrane-bound organelle;1.19282695664506e-239!GO:0043227;membrane-bound organelle;1.19282695664506e-239!GO:0005737;cytoplasm;1.67102397547842e-179!GO:0044422;organelle part;4.70099319042895e-156!GO:0044446;intracellular organelle part;1.87871051207295e-154!GO:0005634;nucleus;8.83221651048858e-123!GO:0044444;cytoplasmic part;3.82430565394642e-118!GO:0032991;macromolecular complex;3.1656991666875e-116!GO:0044238;primary metabolic process;2.81765284449806e-108!GO:0044237;cellular metabolic process;5.80466270029488e-108!GO:0043170;macromolecule metabolic process;4.28293784967535e-105!GO:0030529;ribonucleoprotein complex;4.32666365385844e-99!GO:0003723;RNA binding;1.21036067704574e-90!GO:0044428;nuclear part;2.08278088454065e-90!GO:0043233;organelle lumen;5.44925618783006e-84!GO:0031974;membrane-enclosed lumen;5.44925618783006e-84!GO:0005515;protein binding;9.21679399886312e-74!GO:0005739;mitochondrion;3.23762192536949e-71!GO:0043283;biopolymer metabolic process;1.24265574838355e-69!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.33820126594748e-66!GO:0010467;gene expression;4.55633756557904e-64!GO:0006396;RNA processing;1.50085794070719e-61!GO:0016043;cellular component organization and biogenesis;5.55896717029363e-59!GO:0043234;protein complex;2.33335981853118e-58!GO:0005840;ribosome;3.85465175199209e-56!GO:0031981;nuclear lumen;4.67523282693511e-55!GO:0006412;translation;6.02617609105726e-54!GO:0006996;organelle organization and biogenesis;4.75146067767296e-50!GO:0003735;structural constituent of ribosome;8.03519661752397e-48!GO:0043228;non-membrane-bound organelle;2.00836017644676e-47!GO:0043232;intracellular non-membrane-bound organelle;2.00836017644676e-47!GO:0016071;mRNA metabolic process;2.56807076990937e-47!GO:0044429;mitochondrial part;2.59981139723911e-46!GO:0003676;nucleic acid binding;4.22791405354431e-45!GO:0019538;protein metabolic process;2.20203842684966e-44!GO:0006259;DNA metabolic process;1.12633797283771e-43!GO:0008380;RNA splicing;1.65803220333057e-43!GO:0044249;cellular biosynthetic process;7.25242376646162e-43!GO:0033279;ribosomal subunit;2.78619492007878e-42!GO:0009058;biosynthetic process;1.43293142630527e-41!GO:0031967;organelle envelope;1.68232554156491e-41!GO:0031975;envelope;3.80870936071659e-41!GO:0031090;organelle membrane;8.34751480519972e-41!GO:0033036;macromolecule localization;5.80413846643374e-40!GO:0006397;mRNA processing;6.09311964540614e-40!GO:0065003;macromolecular complex assembly;1.13717916093252e-39!GO:0015031;protein transport;1.58376654256186e-39!GO:0009059;macromolecule biosynthetic process;4.18187546249538e-39!GO:0044267;cellular protein metabolic process;1.30801274292306e-38!GO:0044260;cellular macromolecule metabolic process;2.16985835002234e-38!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.36873540026788e-37!GO:0022607;cellular component assembly;5.05338275886653e-37!GO:0046907;intracellular transport;1.20624828262915e-35!GO:0016070;RNA metabolic process;4.22320931240773e-35!GO:0008104;protein localization;4.36093060437563e-35!GO:0045184;establishment of protein localization;1.02861258800647e-34!GO:0005829;cytosol;5.25356235197358e-34!GO:0005654;nucleoplasm;2.51410761002781e-32!GO:0007049;cell cycle;5.57767936259588e-32!GO:0005681;spliceosome;6.89137317918944e-32!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.42406046477002e-30!GO:0000166;nucleotide binding;3.82372224319426e-30!GO:0005740;mitochondrial envelope;3.78209491786944e-28!GO:0019866;organelle inner membrane;5.09708505426788e-28!GO:0005694;chromosome;1.45752142807887e-27!GO:0006886;intracellular protein transport;1.94402632582463e-27!GO:0044451;nucleoplasm part;2.55612517472753e-26!GO:0031966;mitochondrial membrane;7.32345516843925e-26!GO:0005743;mitochondrial inner membrane;8.56984465813127e-26!GO:0051649;establishment of cellular localization;2.63764088232846e-25!GO:0044427;chromosomal part;6.07188875701532e-25!GO:0044445;cytosolic part;1.38100818781254e-24!GO:0051276;chromosome organization and biogenesis;1.53929573850475e-24!GO:0022402;cell cycle process;2.76786483852349e-24!GO:0006974;response to DNA damage stimulus;2.80443829918238e-24!GO:0005730;nucleolus;3.43762873671879e-24!GO:0051641;cellular localization;4.37437743303469e-24!GO:0000278;mitotic cell cycle;2.62217141494892e-23!GO:0044455;mitochondrial membrane part;5.43260480344047e-22!GO:0006119;oxidative phosphorylation;5.74507599343357e-22!GO:0015934;large ribosomal subunit;8.1135074318563e-22!GO:0031980;mitochondrial lumen;8.4986131870178e-22!GO:0005759;mitochondrial matrix;8.4986131870178e-22!GO:0015935;small ribosomal subunit;1.73616933488346e-21!GO:0016462;pyrophosphatase activity;4.58340355906038e-21!GO:0016874;ligase activity;5.78175484886092e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;7.08215730402856e-21!GO:0022618;protein-RNA complex assembly;9.8302068476052e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.17127026556245e-20!GO:0022403;cell cycle phase;2.90606293848285e-20!GO:0000087;M phase of mitotic cell cycle;4.98937202496736e-20!GO:0032553;ribonucleotide binding;5.67137623784366e-20!GO:0032555;purine ribonucleotide binding;5.67137623784366e-20!GO:0017111;nucleoside-triphosphatase activity;6.45116888295629e-20!GO:0007067;mitosis;1.17329240934782e-19!GO:0044265;cellular macromolecule catabolic process;1.27806321931326e-19!GO:0006281;DNA repair;1.39931878556264e-19!GO:0006512;ubiquitin cycle;4.45710132498166e-19!GO:0006325;establishment and/or maintenance of chromatin architecture;6.45775978615793e-19!GO:0017076;purine nucleotide binding;7.34264180719812e-19!GO:0051301;cell division;2.52709213722936e-18!GO:0006323;DNA packaging;2.9789942046388e-18!GO:0006260;DNA replication;8.22442466255616e-18!GO:0000279;M phase;8.6143890502248e-18!GO:0043285;biopolymer catabolic process;9.27962819406861e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;2.03931099272532e-17!GO:0006457;protein folding;2.16823752489081e-17!GO:0008135;translation factor activity, nucleic acid binding;2.21811001177872e-17!GO:0019941;modification-dependent protein catabolic process;3.33747261932927e-17!GO:0043632;modification-dependent macromolecule catabolic process;3.33747261932927e-17!GO:0009057;macromolecule catabolic process;3.85839666627347e-17!GO:0006511;ubiquitin-dependent protein catabolic process;4.93122766431574e-17!GO:0042254;ribosome biogenesis and assembly;4.97583162499453e-17!GO:0044257;cellular protein catabolic process;5.26355271036331e-17!GO:0005524;ATP binding;7.92197941587159e-17!GO:0005746;mitochondrial respiratory chain;8.73857468841664e-17!GO:0032559;adenyl ribonucleotide binding;1.33801435489817e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;2.85587081939965e-16!GO:0000375;RNA splicing, via transesterification reactions;2.85587081939965e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.85587081939965e-16!GO:0005761;mitochondrial ribosome;3.13941826519177e-16!GO:0000313;organellar ribosome;3.13941826519177e-16!GO:0050136;NADH dehydrogenase (quinone) activity;3.91107768035583e-16!GO:0003954;NADH dehydrogenase activity;3.91107768035583e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.91107768035583e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.65339106155069e-16!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.8181887162914e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.07709806417396e-15!GO:0012505;endomembrane system;1.46544273614922e-15!GO:0030554;adenyl nucleotide binding;2.33057972485975e-15!GO:0031965;nuclear membrane;2.41768904122633e-15!GO:0048770;pigment granule;2.56764010152239e-15!GO:0042470;melanosome;2.56764010152239e-15!GO:0030163;protein catabolic process;3.09683173495752e-15!GO:0009719;response to endogenous stimulus;5.06879915225466e-15!GO:0044248;cellular catabolic process;7.0853189215958e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.7177279373663e-14!GO:0008134;transcription factor binding;2.87815210706237e-14!GO:0005635;nuclear envelope;3.3747461314178e-14!GO:0044453;nuclear membrane part;3.52989881650488e-14!GO:0016604;nuclear body;3.71610718044296e-14!GO:0043412;biopolymer modification;4.69582260073291e-14!GO:0042775;organelle ATP synthesis coupled electron transport;6.07971695539423e-14!GO:0042773;ATP synthesis coupled electron transport;6.07971695539423e-14!GO:0030964;NADH dehydrogenase complex (quinone);6.32965257668514e-14!GO:0045271;respiratory chain complex I;6.32965257668514e-14!GO:0005747;mitochondrial respiratory chain complex I;6.32965257668514e-14!GO:0006605;protein targeting;7.56927224895181e-14!GO:0005643;nuclear pore;9.74075600217642e-14!GO:0051082;unfolded protein binding;1.17040593026672e-13!GO:0006403;RNA localization;1.71658722015376e-13!GO:0005794;Golgi apparatus;1.73811879028571e-13!GO:0006399;tRNA metabolic process;1.86461982374144e-13!GO:0000785;chromatin;2.0730263647661e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.19374727713769e-13!GO:0050657;nucleic acid transport;4.76402491543515e-13!GO:0051236;establishment of RNA localization;4.76402491543515e-13!GO:0050658;RNA transport;4.76402491543515e-13!GO:0006413;translational initiation;5.76532663361922e-13!GO:0004386;helicase activity;7.53866676634496e-13!GO:0003743;translation initiation factor activity;1.7310349230152e-12!GO:0051186;cofactor metabolic process;2.06218678934349e-12!GO:0065004;protein-DNA complex assembly;2.94743538612989e-12!GO:0006446;regulation of translational initiation;3.36078127441178e-12!GO:0016072;rRNA metabolic process;3.68483729325777e-12!GO:0006364;rRNA processing;4.43151687408841e-12!GO:0016607;nuclear speck;5.23154047366167e-12!GO:0042623;ATPase activity, coupled;6.17976641552357e-12!GO:0016887;ATPase activity;8.05463465587345e-12!GO:0015630;microtubule cytoskeleton;8.17833908780575e-12!GO:0006464;protein modification process;9.12833634179252e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.24070806683366e-11!GO:0048193;Golgi vesicle transport;1.68636383415758e-11!GO:0006333;chromatin assembly or disassembly;2.23845712620172e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.48905361833165e-11!GO:0043687;post-translational protein modification;2.65541121512239e-11!GO:0050794;regulation of cellular process;3.4045339376773e-11!GO:0006461;protein complex assembly;3.8059119568196e-11!GO:0051028;mRNA transport;3.99852553765404e-11!GO:0065002;intracellular protein transport across a membrane;4.26393765593274e-11!GO:0006732;coenzyme metabolic process;7.1543100518358e-11!GO:0008026;ATP-dependent helicase activity;8.22512651342836e-11!GO:0008565;protein transporter activity;8.82408963244951e-11!GO:0006913;nucleocytoplasmic transport;9.86555381913983e-11!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;9.97023941630181e-11!GO:0004812;aminoacyl-tRNA ligase activity;9.97023941630181e-11!GO:0016875;ligase activity, forming carbon-oxygen bonds;9.97023941630181e-11!GO:0051726;regulation of cell cycle;1.61903956425213e-10!GO:0016568;chromatin modification;1.6914670685226e-10!GO:0000074;regulation of progression through cell cycle;1.82168699279869e-10!GO:0046930;pore complex;2.00161247065906e-10!GO:0043038;amino acid activation;2.6366544768683e-10!GO:0006418;tRNA aminoacylation for protein translation;2.6366544768683e-10!GO:0043039;tRNA aminoacylation;2.6366544768683e-10!GO:0051169;nuclear transport;2.72473498866355e-10!GO:0030532;small nuclear ribonucleoprotein complex;3.39667411052099e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.29579554704771e-10!GO:0019222;regulation of metabolic process;5.28439840870102e-10!GO:0006261;DNA-dependent DNA replication;5.7616840907879e-10!GO:0016740;transferase activity;9.22784647119625e-10!GO:0016192;vesicle-mediated transport;1.0761619931654e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.01590518983751e-09!GO:0005783;endoplasmic reticulum;2.30843659654317e-09!GO:0000775;chromosome, pericentric region;2.340864398695e-09!GO:0008639;small protein conjugating enzyme activity;2.86878783035627e-09!GO:0004842;ubiquitin-protein ligase activity;5.54085453668349e-09!GO:0006366;transcription from RNA polymerase II promoter;7.77189629668546e-09!GO:0009055;electron carrier activity;7.89481994802257e-09!GO:0019787;small conjugating protein ligase activity;8.00229549010859e-09!GO:0009259;ribonucleotide metabolic process;9.43126118383033e-09!GO:0031497;chromatin assembly;9.43126118383033e-09!GO:0006334;nucleosome assembly;1.00376524337952e-08!GO:0016779;nucleotidyltransferase activity;1.31105790092672e-08!GO:0006163;purine nucleotide metabolic process;1.32191551542274e-08!GO:0006164;purine nucleotide biosynthetic process;1.6836658299467e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.75844195778544e-08!GO:0003712;transcription cofactor activity;2.23109783350993e-08!GO:0009056;catabolic process;2.65745455727861e-08!GO:0009260;ribonucleotide biosynthetic process;2.70986881846001e-08!GO:0050789;regulation of biological process;2.86069321766558e-08!GO:0003697;single-stranded DNA binding;3.0312431008684e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.08202225139252e-08!GO:0043566;structure-specific DNA binding;4.35221466975938e-08!GO:0017038;protein import;5.7592562504563e-08!GO:0005819;spindle;6.74807342427272e-08!GO:0005793;ER-Golgi intermediate compartment;1.07008519333697e-07!GO:0009060;aerobic respiration;1.07150865607817e-07!GO:0006350;transcription;1.19887271727815e-07!GO:0009150;purine ribonucleotide metabolic process;1.28985732241962e-07!GO:0016881;acid-amino acid ligase activity;1.51388636534182e-07!GO:0031323;regulation of cellular metabolic process;1.5460337591578e-07!GO:0007051;spindle organization and biogenesis;1.5460337591578e-07!GO:0003899;DNA-directed RNA polymerase activity;1.62235371627113e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.69047884131363e-07!GO:0015986;ATP synthesis coupled proton transport;1.71037715457743e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.71037715457743e-07!GO:0007005;mitochondrion organization and biogenesis;1.79661241140198e-07!GO:0007010;cytoskeleton organization and biogenesis;2.01206424452986e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.18911132745674e-07!GO:0045333;cellular respiration;2.19227490069947e-07!GO:0000245;spliceosome assembly;2.53033847654493e-07!GO:0051188;cofactor biosynthetic process;2.59505552603213e-07!GO:0032446;protein modification by small protein conjugation;2.69262496793118e-07!GO:0043623;cellular protein complex assembly;3.37820216376237e-07!GO:0019829;cation-transporting ATPase activity;3.44338432542747e-07!GO:0005657;replication fork;4.38397039568539e-07!GO:0044432;endoplasmic reticulum part;4.77486932036884e-07!GO:0008094;DNA-dependent ATPase activity;5.15374459725004e-07!GO:0016567;protein ubiquitination;7.17260298726665e-07!GO:0051246;regulation of protein metabolic process;7.76426891518083e-07!GO:0048475;coated membrane;9.62293970712513e-07!GO:0030117;membrane coat;9.62293970712513e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.5111137968949e-06!GO:0009108;coenzyme biosynthetic process;1.53208957403619e-06!GO:0003724;RNA helicase activity;1.76606110550414e-06!GO:0006099;tricarboxylic acid cycle;1.80223377444529e-06!GO:0046356;acetyl-CoA catabolic process;1.80223377444529e-06!GO:0010468;regulation of gene expression;1.8542542911624e-06!GO:0045259;proton-transporting ATP synthase complex;2.06213248550721e-06!GO:0012501;programmed cell death;2.14772606271408e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.16969817538326e-06!GO:0003924;GTPase activity;2.18413878889956e-06!GO:0005667;transcription factor complex;2.25875684572368e-06!GO:0009117;nucleotide metabolic process;2.25875684572368e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.28445859781872e-06!GO:0006084;acetyl-CoA metabolic process;2.73556786322811e-06!GO:0006915;apoptosis;3.10337467031846e-06!GO:0006793;phosphorus metabolic process;3.10337467031846e-06!GO:0006796;phosphate metabolic process;3.10337467031846e-06!GO:0009142;nucleoside triphosphate biosynthetic process;3.45122156871319e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.45122156871319e-06!GO:0007017;microtubule-based process;3.60320912141969e-06!GO:0015078;hydrogen ion transmembrane transporter activity;3.72310286331048e-06!GO:0005813;centrosome;4.11190165693687e-06!GO:0006754;ATP biosynthetic process;4.11190165693687e-06!GO:0006753;nucleoside phosphate metabolic process;4.11190165693687e-06!GO:0051329;interphase of mitotic cell cycle;4.19886311457864e-06!GO:0005874;microtubule;4.24940477187617e-06!GO:0009199;ribonucleoside triphosphate metabolic process;4.74429643492836e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.8256857982853e-06!GO:0009141;nucleoside triphosphate metabolic process;5.31992332197112e-06!GO:0031988;membrane-bound vesicle;5.48454052256549e-06!GO:0032774;RNA biosynthetic process;5.73121234886851e-06!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.85377163232791e-06!GO:0005525;GTP binding;6.25029944897213e-06!GO:0051325;interphase;6.43577179217731e-06!GO:0000075;cell cycle checkpoint;6.43577179217731e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.01932532456169e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.01932532456169e-06!GO:0006351;transcription, DNA-dependent;7.16629557738233e-06!GO:0031982;vesicle;7.2190850527396e-06!GO:0006752;group transfer coenzyme metabolic process;7.48852769078548e-06!GO:0016023;cytoplasmic membrane-bound vesicle;7.49072090388538e-06!GO:0000314;organellar small ribosomal subunit;7.98489755635555e-06!GO:0005763;mitochondrial small ribosomal subunit;7.98489755635555e-06!GO:0005839;proteasome core complex (sensu Eukaryota);8.12287703770225e-06!GO:0046034;ATP metabolic process;8.2680685243933e-06!GO:0005762;mitochondrial large ribosomal subunit;9.04438929443378e-06!GO:0000315;organellar large ribosomal subunit;9.04438929443378e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.1630190540759e-06!GO:0009144;purine nucleoside triphosphate metabolic process;9.1630190540759e-06!GO:0005815;microtubule organizing center;9.25616177541591e-06!GO:0016363;nuclear matrix;1.01997026492696e-05!GO:0044431;Golgi apparatus part;1.11414421600299e-05!GO:0016741;transferase activity, transferring one-carbon groups;1.11735933931021e-05!GO:0005768;endosome;1.14773831823569e-05!GO:0031410;cytoplasmic vesicle;1.23019675349728e-05!GO:0008219;cell death;1.51171020015275e-05!GO:0016265;death;1.51171020015275e-05!GO:0051427;hormone receptor binding;1.5280351013159e-05!GO:0051168;nuclear export;1.55762175261132e-05!GO:0000776;kinetochore;1.82004105041345e-05!GO:0008168;methyltransferase activity;1.92462851299822e-05!GO:0009109;coenzyme catabolic process;1.99184425699091e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;2.00027721639342e-05!GO:0007059;chromosome segregation;2.19052683320966e-05!GO:0030120;vesicle coat;2.20059588548262e-05!GO:0030662;coated vesicle membrane;2.20059588548262e-05!GO:0006613;cotranslational protein targeting to membrane;2.2827739404946e-05!GO:0044452;nucleolar part;2.32680511968355e-05!GO:0051187;cofactor catabolic process;2.52471369587421e-05!GO:0003682;chromatin binding;2.57746968597286e-05!GO:0051170;nuclear import;2.60997973273312e-05!GO:0016853;isomerase activity;3.05734489959965e-05!GO:0035257;nuclear hormone receptor binding;3.37685999111697e-05!GO:0006402;mRNA catabolic process;3.45629361278333e-05!GO:0003729;mRNA binding;3.98395834764451e-05!GO:0006401;RNA catabolic process;4.24445619815963e-05!GO:0004298;threonine endopeptidase activity;4.74073145110991e-05!GO:0006383;transcription from RNA polymerase III promoter;4.89256139579638e-05!GO:0043021;ribonucleoprotein binding;5.00077928859997e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;5.11406930948984e-05!GO:0032561;guanyl ribonucleotide binding;5.20556930784715e-05!GO:0019001;guanyl nucleotide binding;5.20556930784715e-05!GO:0016310;phosphorylation;5.63255742830067e-05!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.75408727219314e-05!GO:0005789;endoplasmic reticulum membrane;6.70295075255982e-05!GO:0008186;RNA-dependent ATPase activity;6.77347149215145e-05!GO:0006606;protein import into nucleus;7.07332979419543e-05!GO:0003690;double-stranded DNA binding;7.09665420102578e-05!GO:0006520;amino acid metabolic process;7.16921935874323e-05!GO:0000151;ubiquitin ligase complex;7.19214327473221e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.86619333961353e-05!GO:0016859;cis-trans isomerase activity;9.09643552903718e-05!GO:0008033;tRNA processing;9.40164493223159e-05!GO:0000139;Golgi membrane;9.62797374613315e-05!GO:0006302;double-strand break repair;9.66379833658415e-05!GO:0031252;leading edge;9.77532982040307e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000105579737323198!GO:0051052;regulation of DNA metabolic process;0.000114911395797501!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000118627477679373!GO:0031324;negative regulation of cellular metabolic process;0.000119105464697336!GO:0000059;protein import into nucleus, docking;0.000128350373921161!GO:0007093;mitotic cell cycle checkpoint;0.000138667942344188!GO:0003677;DNA binding;0.000139162914911544!GO:0030880;RNA polymerase complex;0.000152506608107309!GO:0043681;protein import into mitochondrion;0.000165164280318042!GO:0045449;regulation of transcription;0.000170941058566196!GO:0005770;late endosome;0.000172615474639511!GO:0051087;chaperone binding;0.00018200305993816!GO:0003678;DNA helicase activity;0.000214485554853107!GO:0004004;ATP-dependent RNA helicase activity;0.000215001018729476!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000219801677375763!GO:0006612;protein targeting to membrane;0.000234488287754397!GO:0048523;negative regulation of cellular process;0.000237871192477797!GO:0006338;chromatin remodeling;0.000244338039317966!GO:0005769;early endosome;0.000265693483053907!GO:0007264;small GTPase mediated signal transduction;0.00026994427783937!GO:0015631;tubulin binding;0.00026994427783937!GO:0045454;cell redox homeostasis;0.000282822952143051!GO:0009165;nucleotide biosynthetic process;0.000283447991510633!GO:0005798;Golgi-associated vesicle;0.000290865564643675!GO:0000786;nucleosome;0.000320594697943475!GO:0007052;mitotic spindle organization and biogenesis;0.000324258151993859!GO:0044440;endosomal part;0.000337046941251485!GO:0010008;endosome membrane;0.000337046941251485!GO:0032259;methylation;0.000338265813010232!GO:0007006;mitochondrial membrane organization and biogenesis;0.000339501044824848!GO:0003713;transcription coactivator activity;0.000340067313191167!GO:0006414;translational elongation;0.000365139758104638!GO:0006730;one-carbon compound metabolic process;0.000386518846773977!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000387766697916721!GO:0000428;DNA-directed RNA polymerase complex;0.000387766697916721!GO:0043414;biopolymer methylation;0.000387766697916721!GO:0006839;mitochondrial transport;0.000406433866725061!GO:0006352;transcription initiation;0.000412058117769727!GO:0006541;glutamine metabolic process;0.000420400022871095!GO:0045786;negative regulation of progression through cell cycle;0.000432662067645148!GO:0005684;U2-dependent spliceosome;0.000439490281618024!GO:0008654;phospholipid biosynthetic process;0.000444520935218707!GO:0042802;identical protein binding;0.000447029683942211!GO:0009892;negative regulation of metabolic process;0.000464348925886319!GO:0065007;biological regulation;0.000498410020363411!GO:0007088;regulation of mitosis;0.000499146618040689!GO:0048471;perinuclear region of cytoplasm;0.000516950708418823!GO:0003684;damaged DNA binding;0.00052951935163483!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000556110831648164!GO:0016281;eukaryotic translation initiation factor 4F complex;0.000567190757651019!GO:0051920;peroxiredoxin activity;0.000577024275360713!GO:0051252;regulation of RNA metabolic process;0.000604046419958649!GO:0009112;nucleobase metabolic process;0.000662425569772152!GO:0006355;regulation of transcription, DNA-dependent;0.000702161330507223!GO:0032508;DNA duplex unwinding;0.000713804348122303!GO:0032392;DNA geometric change;0.000713804348122303!GO:0008250;oligosaccharyl transferase complex;0.000830219537687799!GO:0015980;energy derivation by oxidation of organic compounds;0.000860600172508104!GO:0030036;actin cytoskeleton organization and biogenesis;0.0008774083301528!GO:0016272;prefoldin complex;0.000917904980428196!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000922755274302766!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000922755274302766!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000922755274302766!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000938223948392446!GO:0000228;nuclear chromosome;0.000958355197699614!GO:0016251;general RNA polymerase II transcription factor activity;0.000999120292694405!GO:0006310;DNA recombination;0.00103816235468872!GO:0016564;transcription repressor activity;0.00104076723917233!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00106177869899084!GO:0005048;signal sequence binding;0.0010829578209729!GO:0006144;purine base metabolic process;0.00109547552574766!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00109920623814005!GO:0006405;RNA export from nucleus;0.00111582973548439!GO:0004527;exonuclease activity;0.00113064533326453!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00117488619160883!GO:0006626;protein targeting to mitochondrion;0.001185370419907!GO:0048487;beta-tubulin binding;0.00122143053407912!GO:0032200;telomere organization and biogenesis;0.00122868080350175!GO:0000723;telomere maintenance;0.00122868080350175!GO:0043488;regulation of mRNA stability;0.0013439687554702!GO:0043487;regulation of RNA stability;0.0013439687554702!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00142588477427851!GO:0045045;secretory pathway;0.0015264623834505!GO:0006268;DNA unwinding during replication;0.00155995138074628!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00156536476153385!GO:0000049;tRNA binding;0.00156853626486108!GO:0016563;transcription activator activity;0.0015920762158158!GO:0005788;endoplasmic reticulum lumen;0.00159837749938404!GO:0003714;transcription corepressor activity;0.00161240836532148!GO:0030867;rough endoplasmic reticulum membrane;0.0017801193040936!GO:0043069;negative regulation of programmed cell death;0.00182673992922152!GO:0016481;negative regulation of transcription;0.00182923171593599!GO:0040029;regulation of gene expression, epigenetic;0.00188024656538334!GO:0033116;ER-Golgi intermediate compartment membrane;0.00191870113896258!GO:0005669;transcription factor TFIID complex;0.00195285142161165!GO:0008092;cytoskeletal protein binding;0.0019870283089702!GO:0008287;protein serine/threonine phosphatase complex;0.00201326597776517!GO:0019843;rRNA binding;0.00204300914354839!GO:0006284;base-excision repair;0.00210118598161687!GO:0000159;protein phosphatase type 2A complex;0.00213946928880882!GO:0043066;negative regulation of apoptosis;0.00214749866680411!GO:0006519;amino acid and derivative metabolic process;0.0021858714593566!GO:0043596;nuclear replication fork;0.00220670787181149!GO:0030118;clathrin coat;0.00228255926993686!GO:0005876;spindle microtubule;0.00228487195925636!GO:0004576;oligosaccharyl transferase activity;0.0023014363908229!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00231369866077684!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00231369866077684!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00231369866077684!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00236359345033727!GO:0048519;negative regulation of biological process;0.00241369691118315!GO:0016787;hydrolase activity;0.00246755857277309!GO:0042981;regulation of apoptosis;0.0025500361427746!GO:0006270;DNA replication initiation;0.00256467512355609!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00263034412213083!GO:0005637;nuclear inner membrane;0.00263143630330945!GO:0043067;regulation of programmed cell death;0.00269183893687489!GO:0008601;protein phosphatase type 2A regulator activity;0.00276722781398799!GO:0044454;nuclear chromosome part;0.00288500822446858!GO:0030029;actin filament-based process;0.00292512214669295!GO:0048500;signal recognition particle;0.00295496126922897!GO:0005741;mitochondrial outer membrane;0.00301196393582659!GO:0051539;4 iron, 4 sulfur cluster binding;0.00308687295576348!GO:0009116;nucleoside metabolic process;0.00309546581641752!GO:0008022;protein C-terminus binding;0.00310083434028919!GO:0005758;mitochondrial intermembrane space;0.00310760199199687!GO:0006611;protein export from nucleus;0.00313455249418787!GO:0003711;transcription elongation regulator activity;0.00313455249418787!GO:0008652;amino acid biosynthetic process;0.00313455249418787!GO:0019899;enzyme binding;0.00333318765197375!GO:0006275;regulation of DNA replication;0.00347379273779763!GO:0005885;Arp2/3 protein complex;0.00367738626024276!GO:0044262;cellular carbohydrate metabolic process;0.00386131369555404!GO:0006595;polyamine metabolic process;0.0038642413866739!GO:0000792;heterochromatin;0.00386933458781826!GO:0031072;heat shock protein binding;0.00391068780773383!GO:0046483;heterocycle metabolic process;0.00391223436101145!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00393869466791269!GO:0000922;spindle pole;0.00400549922903493!GO:0030521;androgen receptor signaling pathway;0.00402444783285593!GO:0000209;protein polyubiquitination;0.00410478468657011!GO:0008312;7S RNA binding;0.00421784773887438!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00422022231917322!GO:0015002;heme-copper terminal oxidase activity;0.00422022231917322!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00422022231917322!GO:0004129;cytochrome-c oxidase activity;0.00422022231917322!GO:0030658;transport vesicle membrane;0.00467488811249885!GO:0030119;AP-type membrane coat adaptor complex;0.00469940297174784!GO:0030027;lamellipodium;0.00475988826437858!GO:0016584;nucleosome positioning;0.0048229643435339!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00491387480109235!GO:0003746;translation elongation factor activity;0.00493558598226884!GO:0006916;anti-apoptosis;0.00516627844149234!GO:0035258;steroid hormone receptor binding;0.0052473359193729!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00531417740741483!GO:0018196;peptidyl-asparagine modification;0.00531417740741483!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00531417740741483!GO:0031577;spindle checkpoint;0.00534162169452108!GO:0030134;ER to Golgi transport vesicle;0.0053745856442165!GO:0004518;nuclease activity;0.00537798590197178!GO:0000781;chromosome, telomeric region;0.00556538405232457!GO:0042393;histone binding;0.00570364591510444!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00574269323127991!GO:0030133;transport vesicle;0.00597987446482468!GO:0031970;organelle envelope lumen;0.00598210928515749!GO:0046474;glycerophospholipid biosynthetic process;0.00598252340443844!GO:0004674;protein serine/threonine kinase activity;0.00601579613212103!GO:0007004;telomere maintenance via telomerase;0.00608530785569804!GO:0051789;response to protein stimulus;0.00609332372052475!GO:0006986;response to unfolded protein;0.00609332372052475!GO:0000725;recombinational repair;0.00614573458966015!GO:0000724;double-strand break repair via homologous recombination;0.00614573458966015!GO:0008139;nuclear localization sequence binding;0.00616367861746125!GO:0000178;exosome (RNase complex);0.00618956792321427!GO:0031968;organelle outer membrane;0.00644649409025485!GO:0005905;coated pit;0.0065437012141393!GO:0016126;sterol biosynthetic process;0.00672586938603542!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00674916626116992!GO:0045047;protein targeting to ER;0.00674916626116992!GO:0030131;clathrin adaptor complex;0.00690469747613488!GO:0044450;microtubule organizing center part;0.00712167765662401!GO:0042770;DNA damage response, signal transduction;0.00721433384103106!GO:0051287;NAD binding;0.00751873879002653!GO:0009303;rRNA transcription;0.00758442083646134!GO:0005791;rough endoplasmic reticulum;0.00780296107517566!GO:0009451;RNA modification;0.00785760329424934!GO:0004003;ATP-dependent DNA helicase activity;0.00788050944268333!GO:0043601;nuclear replisome;0.00788050944268333!GO:0030894;replisome;0.00788050944268333!GO:0001726;ruffle;0.00793952055668654!GO:0000819;sister chromatid segregation;0.00794470709872!GO:0006007;glucose catabolic process;0.00795900888874689!GO:0043022;ribosome binding;0.0080181619583342!GO:0000070;mitotic sister chromatid segregation;0.00804369654768408!GO:0031124;mRNA 3'-end processing;0.0080969911186942!GO:0005832;chaperonin-containing T-complex;0.00830853115679737!GO:0019867;outer membrane;0.00835900556577673!GO:0004532;exoribonuclease activity;0.00846687806275738!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00846687806275738!GO:0008017;microtubule binding;0.00849578461024216!GO:0006891;intra-Golgi vesicle-mediated transport;0.00857478190188197!GO:0008180;signalosome;0.00872511797477468!GO:0000339;RNA cap binding;0.0087977245085913!GO:0019783;small conjugating protein-specific protease activity;0.0088518825570721!GO:0016311;dephosphorylation;0.00901738004786155!GO:0006289;nucleotide-excision repair;0.00953756002936305!GO:0031570;DNA integrity checkpoint;0.00973264510982941!GO:0030660;Golgi-associated vesicle membrane;0.00975460206425477!GO:0000096;sulfur amino acid metabolic process;0.00998587736373559!GO:0006378;mRNA polyadenylation;0.0102601772314919!GO:0007021;tubulin folding;0.0103161220479563!GO:0008276;protein methyltransferase activity;0.0111544616763911!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0113734612856068!GO:0006278;RNA-dependent DNA replication;0.0121256667126603!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0122111796151657!GO:0030127;COPII vesicle coat;0.0123126633556147!GO:0012507;ER to Golgi transport vesicle membrane;0.0123126633556147!GO:0016585;chromatin remodeling complex;0.012325842999932!GO:0045892;negative regulation of transcription, DNA-dependent;0.0124571330401134!GO:0046467;membrane lipid biosynthetic process;0.0125377814147493!GO:0051540;metal cluster binding;0.0134139915964256!GO:0051536;iron-sulfur cluster binding;0.0134139915964256!GO:0005938;cell cortex;0.0136936720846567!GO:0065009;regulation of a molecular function;0.0141488126309226!GO:0009064;glutamine family amino acid metabolic process;0.0141603703510601!GO:0004843;ubiquitin-specific protease activity;0.0141610124319508!GO:0000082;G1/S transition of mitotic cell cycle;0.0148093600727662!GO:0051656;establishment of organelle localization;0.0152075321143172!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0152075614886467!GO:0006417;regulation of translation;0.0154529683857516!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0154529683857516!GO:0030663;COPI coated vesicle membrane;0.0156641622720632!GO:0030126;COPI vesicle coat;0.0156641622720632!GO:0006376;mRNA splice site selection;0.0156815939765983!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0156815939765983!GO:0030496;midbody;0.0159352966548784!GO:0019752;carboxylic acid metabolic process;0.0160625193341456!GO:0030145;manganese ion binding;0.0172511742222294!GO:0050662;coenzyme binding;0.0173362054739808!GO:0016791;phosphoric monoester hydrolase activity;0.0176472181927973!GO:0030518;steroid hormone receptor signaling pathway;0.0178224332241292!GO:0005862;muscle thin filament tropomyosin;0.0181286655971144!GO:0016407;acetyltransferase activity;0.0185257429644344!GO:0006082;organic acid metabolic process;0.0185355843136043!GO:0006790;sulfur metabolic process;0.0190416716538917!GO:0000793;condensed chromosome;0.0191536920258537!GO:0006400;tRNA modification;0.0191903842436574!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0192292886262407!GO:0004221;ubiquitin thiolesterase activity;0.0197429465673267!GO:0017166;vinculin binding;0.0198001665055973!GO:0008408;3'-5' exonuclease activity;0.0198001665055973!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0201740419674374!GO:0010257;NADH dehydrogenase complex assembly;0.0201740419674374!GO:0033108;mitochondrial respiratory chain complex assembly;0.0201740419674374!GO:0006650;glycerophospholipid metabolic process;0.020451105207566!GO:0043284;biopolymer biosynthetic process;0.0205787093033187!GO:0008632;apoptotic program;0.0206076872812581!GO:0005996;monosaccharide metabolic process;0.0206582562483572!GO:0004722;protein serine/threonine phosphatase activity;0.0212913297629092!GO:0005663;DNA replication factor C complex;0.0214372302892576!GO:0009308;amine metabolic process;0.0219374296477406!GO:0006695;cholesterol biosynthetic process;0.0219374296477406!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0220147125783925!GO:0008270;zinc ion binding;0.0221482735084143!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.022241428413558!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.022363132798534!GO:0001725;stress fiber;0.0223678573470746!GO:0032432;actin filament bundle;0.0223678573470746!GO:0000123;histone acetyltransferase complex;0.0224960092963797!GO:0043624;cellular protein complex disassembly;0.0226483337207973!GO:0030659;cytoplasmic vesicle membrane;0.0229653820854358!GO:0022890;inorganic cation transmembrane transporter activity;0.0231906521699265!GO:0050178;phenylpyruvate tautomerase activity;0.0232369967277814!GO:0045947;negative regulation of translational initiation;0.0236743609180785!GO:0006220;pyrimidine nucleotide metabolic process;0.0238945858081613!GO:0012506;vesicle membrane;0.0241153018756876!GO:0042026;protein refolding;0.0242340621063887!GO:0019904;protein domain specific binding;0.0245664869982308!GO:0046966;thyroid hormone receptor binding;0.0249443074949057!GO:0032984;macromolecular complex disassembly;0.0253344729805463!GO:0000726;non-recombinational repair;0.0255095015552283!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0258084241805585!GO:0030176;integral to endoplasmic reticulum membrane;0.0260592523309864!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0261576206318712!GO:0045039;protein import into mitochondrial inner membrane;0.0261576206318712!GO:0016044;membrane organization and biogenesis;0.0269651729727063!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0270937317207104!GO:0016835;carbon-oxygen lyase activity;0.0271454244414897!GO:0008629;induction of apoptosis by intracellular signals;0.0271520565390583!GO:0046365;monosaccharide catabolic process;0.0276915539135856!GO:0005773;vacuole;0.0277184935537128!GO:0000910;cytokinesis;0.0280399107738617!GO:0051098;regulation of binding;0.0281333560037517!GO:0035267;NuA4 histone acetyltransferase complex;0.0281958163927672!GO:0009124;nucleoside monophosphate biosynthetic process;0.0282213589089997!GO:0009123;nucleoside monophosphate metabolic process;0.0282213589089997!GO:0044433;cytoplasmic vesicle part;0.0286668168185502!GO:0050749;apolipoprotein E receptor binding;0.0286707178967179!GO:0015992;proton transport;0.0286707178967179!GO:0008213;protein amino acid alkylation;0.028749520078663!GO:0006479;protein amino acid methylation;0.028749520078663!GO:0031123;RNA 3'-end processing;0.028956484784382!GO:0009113;purine base biosynthetic process;0.0289862308323506!GO:0019318;hexose metabolic process;0.0290252295412955!GO:0005652;nuclear lamina;0.0291033290448849!GO:0008538;proteasome activator activity;0.029774736554195!GO:0042769;DNA damage response, detection of DNA damage;0.0302059623086125!GO:0046489;phosphoinositide biosynthetic process;0.0303722081316396!GO:0046426;negative regulation of JAK-STAT cascade;0.0305612146548957!GO:0005875;microtubule associated complex;0.0306233867848675!GO:0009081;branched chain family amino acid metabolic process;0.0308607819466328!GO:0006818;hydrogen transport;0.0310544416164286!GO:0043189;H4/H2A histone acetyltransferase complex;0.0312278025942039!GO:0000097;sulfur amino acid biosynthetic process;0.031362883187313!GO:0000077;DNA damage checkpoint;0.0315937341978797!GO:0000086;G2/M transition of mitotic cell cycle;0.0318574729417526!GO:0051101;regulation of DNA binding;0.0319747721202107!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0319804452986305!GO:0006607;NLS-bearing substrate import into nucleus;0.0322900767731585!GO:0016491;oxidoreductase activity;0.0327811611961438!GO:0008097;5S rRNA binding;0.0328287218666718!GO:0005784;translocon complex;0.0334784020163079!GO:0007050;cell cycle arrest;0.0334784020163079!GO:0004721;phosphoprotein phosphatase activity;0.033509727628638!GO:0030137;COPI-coated vesicle;0.0337678749990065!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0342327685404359!GO:0031371;ubiquitin conjugating enzyme complex;0.0342327685404359!GO:0009119;ribonucleoside metabolic process;0.0345891488646397!GO:0006096;glycolysis;0.0354411716990393!GO:0016790;thiolester hydrolase activity;0.0357957156994961!GO:0000790;nuclear chromatin;0.0367464911413429!GO:0006091;generation of precursor metabolites and energy;0.0370636362737306!GO:0043086;negative regulation of catalytic activity;0.0374189787970711!GO:0004680;casein kinase activity;0.0377301519336537!GO:0006470;protein amino acid dephosphorylation;0.0380623927873668!GO:0017134;fibroblast growth factor binding;0.0382660651329199!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0391663354188994!GO:0009161;ribonucleoside monophosphate metabolic process;0.0394665757583183!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0394665757583183!GO:0005732;small nucleolar ribonucleoprotein complex;0.039766996809048!GO:0006807;nitrogen compound metabolic process;0.0400361946628581!GO:0006733;oxidoreduction coenzyme metabolic process;0.0400777878013437!GO:0031902;late endosome membrane;0.0405969570516664!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0405969570516664!GO:0015399;primary active transmembrane transporter activity;0.0405969570516664!GO:0043241;protein complex disassembly;0.0406598603028895!GO:0043631;RNA polyadenylation;0.04125259438427!GO:0051053;negative regulation of DNA metabolic process;0.0413329806704956!GO:0000118;histone deacetylase complex;0.0422548806614602!GO:0019320;hexose catabolic process;0.0423746748970619!GO:0005666;DNA-directed RNA polymerase III complex;0.042739127638329!GO:0046112;nucleobase biosynthetic process;0.0427716576866348!GO:0005658;alpha DNA polymerase:primase complex;0.0429353660644183!GO:0008637;apoptotic mitochondrial changes;0.0431183210371757!GO:0008143;poly(A) binding;0.0431258315375363!GO:0001824;blastocyst development;0.0431783478387843!GO:0000175;3'-5'-exoribonuclease activity;0.0433562081801522!GO:0030384;phosphoinositide metabolic process;0.0435098587273512!GO:0016884;carbon-nitrogen ligase activity, with glutamine as amido-N-donor;0.0438671728567887!GO:0016301;kinase activity;0.0440491330486624!GO:0046128;purine ribonucleoside metabolic process;0.0442361773603613!GO:0042278;purine nucleoside metabolic process;0.0442361773603613!GO:0006984;ER-nuclear signaling pathway;0.0442361773603613!GO:0006740;NADPH regeneration;0.0448444126696057!GO:0006098;pentose-phosphate shunt;0.0448444126696057!GO:0050681;androgen receptor binding;0.0448899302921784!GO:0022411;cellular component disassembly;0.0452638288999584!GO:0006406;mRNA export from nucleus;0.0468931651569086!GO:0006189;'de novo' IMP biosynthetic process;0.0470746139438725!GO:0006188;IMP biosynthetic process;0.0470746139438725!GO:0046040;IMP metabolic process;0.0470746139438725!GO:0048037;cofactor binding;0.0470746139438725!GO:0004239;methionyl aminopeptidase activity;0.0478873482001101!GO:0004748;ribonucleoside-diphosphate reductase activity;0.048884058021343!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.048884058021343!GO:0000152;nuclear ubiquitin ligase complex;0.048884058021343!GO:0042532;negative regulation of tyrosine phosphorylation of STAT protein;0.0490583699005052!GO:0042518;negative regulation of tyrosine phosphorylation of Stat3 protein;0.0490583699005052!GO:0050732;negative regulation of peptidyl-tyrosine phosphorylation;0.0490583699005052!GO:0051128;regulation of cellular component organization and biogenesis;0.0490583699005052
|sample_id=12724
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=unclassifiable
|timecourse=Melanocytic_differentiation
|top_motifs=OCT4_SOX2{dimer}:2.95889027251;SP1:1.99951690981;PATZ1:1.90873232543;NFY{A,B,C}:1.73748677663;SNAI1..3:1.58369847139;POU2F1..3:1.46045593773;E2F1..5:1.4053008243;XCPE1{core}:1.39361723951;SOX{8,9,10}:1.32273143527;CUX2:1.26727135107;RREB1:1.23080740044;ZEB1:1.20869144895;MYOD1:1.18940497104;GFI1:1.18366134598;PAX1,9:1.15809143583;ZNF143:1.1420083841;PBX1:1.13901674217;RBPJ:1.13858596296;ZIC1..3:1.11382674077;T:1.10024958839;TFDP1:1.08806793716;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.06908602081;LMO2:1.04502703118;MZF1:0.968798873802;POU5F1:0.961335934226;NANOG:0.897516310983;ONECUT1,2:0.889340764326;FOXM1:0.889245078967;NRF1:0.886276759432;bHLH_family:0.870389839835;MAZ:0.846106742753;IKZF2:0.831012819271;YY1:0.821838372662;LEF1_TCF7_TCF7L1,2:0.784725173233;VSX1,2:0.773214415354;EVI1:0.755983990284;STAT1,3:0.747450838026;SOX2:0.704548731071;MYB:0.686513117772;EBF1:0.677217477807;RORA:0.674099076399;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.633252069494;NKX2-3_NKX2-5:0.61176408273;SOX17:0.544670358054;ALX1:0.542286753696;BREu{core}:0.51114579335;ZNF384:0.501840187296;AIRE:0.499449210973;TOPORS:0.461391459246;CRX:0.45880678793;EN1,2:0.426880738841;ATF4:0.422351979505;CDX1,2,4:0.394204169886;KLF4:0.376937655074;HOX{A4,D4}:0.366418927805;ZFP161:0.364582758412;ESRRA:0.360966093654;SREBF1,2:0.352055647549;ELK1,4_GABP{A,B1}:0.333131924402;EGR1..3:0.323777636576;FOX{I1,J2}:0.293425866949;CDC5L:0.287715042427;POU3F1..4:0.280661623029;TBP:0.277401609946;STAT5{A,B}:0.274278900579;TP53:0.273353724652;TFAP2B:0.232225041991;FOXD3:0.228890540366;FOXQ1:0.198274582323;GTF2I:0.186128492552;UFEwm:0.142256514997;ARID5B:0.129973738292;ZBTB6:0.129155152594;HOX{A5,B5}:0.122954736531;HIC1:0.0959887573782;REST:0.090303706421;HNF4A_NR2F1,2:0.0820709064386;MTF1:0.0749287378622;ADNP_IRX_SIX_ZHX:0.0514472235355;HAND1,2:0.0441692154665;PRDM1:0.0435272380157;NANOG{mouse}:0.00243816956493;PITX1..3:-0.00670471537039;ZBTB16:-0.0242921419276;FOXN1:-0.0723676117984;PAX5:-0.084580071771;TBX4,5:-0.0937246296739;MTE{core}:-0.101805565874;ZNF423:-0.105019653251;HNF1A:-0.110707496454;CREB1:-0.115124432844;NR1H4:-0.117251476688;GCM1,2:-0.131469899818;GATA6:-0.146706858066;PPARG:-0.156247425656;HOX{A6,A7,B6,B7}:-0.160791598663;NR5A1,2:-0.161806805581;NHLH1,2:-0.162532859922;TEF:-0.162863255048;LHX3,4:-0.169470628595;DBP:-0.193791271645;GTF2A1,2:-0.204732625126;PAX2:-0.209854158642;POU6F1:-0.209939080925;HIF1A:-0.211124685445;ESR1:-0.214814861099;PAX3,7:-0.223329537248;RXR{A,B,G}:-0.226208139951;MYFfamily:-0.236612670515;MED-1{core}:-0.237785556595;GFI1B:-0.253248744334;GATA4:-0.258068111272;NKX2-1,4:-0.259245042793;PRRX1,2:-0.262684519144;HSF1,2:-0.282182393693;XBP1:-0.290558469486;JUN:-0.303126361094;TEAD1:-0.30762072294;FOX{F1,F2,J1}:-0.312348255786;ZNF148:-0.336426098781;NFKB1_REL_RELA:-0.339042263817;RFX1:-0.351786599812;FOXA2:-0.390412652703;NFE2L2:-0.398697872476;SRF:-0.405857813763;FOXP1:-0.417933340758;MEF2{A,B,C,D}:-0.429974035791;ATF2:-0.453147254836;PAX8:-0.456631260416;ATF5_CREB3:-0.468735003128;NFE2:-0.478545076322;IKZF1:-0.481108532682;TFAP2{A,C}:-0.489664236257;MYBL2:-0.492027097644;HMGA1,2:-0.550671037639;FOS_FOS{B,L1}_JUN{B,D}:-0.554602427192;TFCP2:-0.57423713558;BACH2:-0.577012528397;NR3C1:-0.593759142993;PAX4:-0.596129079163;NKX2-2,8:-0.59676656395;POU1F1:-0.59678379284;NFE2L1:-0.601132825246;FOSL2:-0.618359562163;HLF:-0.628152638559;NFIX:-0.639725713329;HMX1:-0.664893050355;AR:-0.667366149497;HES1:-0.675139579511;SPIB:-0.683109655993;SPI1:-0.694327316146;SOX5:-0.734150253145;FOXO1,3,4:-0.751603112614;FOXP3:-0.759128480494;RUNX1..3:-0.763728945839;AHR_ARNT_ARNT2:-0.776236228805;ALX4:-0.779612404336;NKX6-1,2:-0.820295894488;BPTF:-0.831319900861;TFAP4:-0.838343759452;NR6A1:-0.840456074503;FOX{D1,D2}:-0.848069914882;CEBPA,B_DDIT3:-0.909996028925;NKX3-1:-0.912447504687;RFX2..5_RFXANK_RFXAP:-0.931060428282;SPZ1:-0.949657981555;ETS1,2:-0.961814207921;FOXL1:-1.00063784329;NKX3-2:-1.00335039237;DMAP1_NCOR{1,2}_SMARC:-1.00428976866;PAX6:-1.02295199545;TAL1_TCF{3,4,12}:-1.02566555553;ELF1,2,4:-1.02567956991;ZNF238:-1.02748421792;HOXA9_MEIS1:-1.06692391732;IRF1,2:-1.13350432033;NFIL3:-1.1346980966;RXRA_VDR{dimer}:-1.1442551765;NFATC1..3:-1.14738224839;IRF7:-1.16455539058;GZF1:-1.17781302388;TLX1..3_NFIC{dimer}:-1.21663152386;HBP1_HMGB_SSRP1_UBTF:-1.2394894943;PDX1:-1.40419768972;GLI1..3:-1.4302764256;TGIF1:-1.46037064849;ATF6:-1.50477174164;MAFB:-1.60155720428;TLX2:-1.62563781282;EP300:-1.74773155071;STAT2,4,6:-1.76264608955;SMAD1..7,9:-2.01764117264
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12724-135G6;search_select_hide=table117:FF:12724-135G6
}}
}}

Latest revision as of 18:43, 4 June 2020

Name:H9 Embryonic Stem cells, biol_rep2 (H9ES-2)
Species:Human (Homo sapiens)
Library ID:CNhs12824
Sample type:time courses
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueunclassifiable
dev stageNA
sexfemale
ageNA
cell typestem cell
cell lineH9
companyNA
collaborationSusan Zabierowski (Wistar Institute)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)NA

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005266
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12824 CAGE DRX008586 DRR009458
Accession ID Hg19

Library idBAMCTSS
CNhs12824 DRZ000883 DRZ002268
Accession ID Hg38

Library idBAMCTSS
CNhs12824 DRZ012233 DRZ013618
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0499
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.576
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0.135
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0.322
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0.0948
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0027
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0126
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.05
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.202
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.161
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.05
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart2.141843e-4
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0.135
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.337
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.574
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.05
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0.82
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12824

Jaspar motifP-value
MA0002.21.41551e-4
MA0003.10.134
MA0004.10.472
MA0006.10.627
MA0007.10.919
MA0009.10.616
MA0014.10.467
MA0017.10.208
MA0018.20.269
MA0019.10.452
MA0024.13.96943e-5
MA0025.10.341
MA0027.10.477
MA0028.10.211
MA0029.10.427
MA0030.10.984
MA0031.10.545
MA0035.20.581
MA0038.18.67494e-4
MA0039.20.0404
MA0040.10.842
MA0041.10.93
MA0042.10.79
MA0043.10.774
MA0046.10.934
MA0047.20.28
MA0048.10.47
MA0050.11.17577e-8
MA0051.14.557e-5
MA0052.10.323
MA0055.10.0937
MA0057.10.456
MA0058.10.414
MA0059.10.869
MA0060.11.49199e-16
MA0061.10.0194
MA0062.20.974
MA0065.20.824
MA0066.10.481
MA0067.10.348
MA0068.10.116
MA0069.10.412
MA0070.10.0379
MA0071.10.706
MA0072.10.703
MA0073.10.926
MA0074.10.696
MA0076.10.189
MA0077.10.113
MA0078.10.689
MA0079.20.0889
MA0080.22.38998e-11
MA0081.10.0571
MA0083.10.343
MA0084.10.422
MA0087.10.936
MA0088.10.636
MA0090.10.366
MA0091.10.0229
MA0092.10.0661
MA0093.10.356
MA0099.26.52097e-11
MA0100.10.576
MA0101.10.136
MA0102.20.00185
MA0103.10.0726
MA0104.20.737
MA0105.17.42083e-4
MA0106.10.954
MA0107.10.06
MA0108.22.54616e-6
MA0111.10.63
MA0112.25.95775e-5
MA0113.10.0775
MA0114.10.554
MA0115.10.687
MA0116.10.00488
MA0117.10.897
MA0119.10.00117
MA0122.10.702
MA0124.10.926
MA0125.10.0284
MA0131.10.833
MA0135.10.236
MA0136.16.90979e-9
MA0137.20.389
MA0138.20.609
MA0139.10.89
MA0140.10.403
MA0141.10.554
MA0142.15.40353e-14
MA0143.15.59461e-5
MA0144.10.0362
MA0145.10.188
MA0146.10.42
MA0147.10.826
MA0148.10.0639
MA0149.10.141
MA0150.19.26455e-4
MA0152.10.398
MA0153.10.937
MA0154.10.0268
MA0155.10.704
MA0156.15.52004e-4
MA0157.10.265
MA0159.10.0992
MA0160.10.307
MA0162.10.542
MA0163.12.19049e-6
MA0164.10.815
MA0258.10.0627
MA0259.10.741



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12824

Novel motifP-value
10.0961
100.0161
1000.897
1010.32
1020.54
1030.17
1040.638
1050.25
1060.0354
1070.272
1080.89
1090.351
110.149
1100.338
1110.0139
1120.26
1130.0427
1140.0191
1150.273
1160.954
1170.298
1180.544
1190.149
120.999
1200.607
1210.808
1220.927
1230.119
1240.12
1250.732
1260.873
1270.677
1280.558
1290.429
130.609
1300.153
1310.469
1320.753
1330.0805
1340.376
1350.0304
1360.175
1370.355
1380.199
1390.00465
140.613
1400.113
1410.547
1420.587
1430.0156
1440.469
1450.413
1460.354
1470.729
1480.00441
1490.0104
150.0695
1500.714
1510.0555
1520.674
1530.189
1540.158
1550.853
1560.777
1570.672
1580.652
1590.779
160.374
1600.256
1610.992
1620.513
1630.662
1640.214
1650.281
1660.634
1670.0151
1680.288
1695.4759e-4
170.315
180.325
190.153
20.539
200.974
210.503
220.213
230.019
240.84
250.323
260.211
270.472
280.812
290.869
30.0772
300.841
310.834
320.0394
330.683
340.858
350.303
360.0466
370.296
380.324
390.483
40.896
400.581
410.19
420.23
430.122
440.752
450.723
460.0604
470.737
480.558
490.0836
50.07
500.875
510.772
520.42
530.153
540.443
550.023
560.618
570.397
580.0645
590.265
60.67
600.0937
610.866
620.0253
630.117
640.294
650.102
660.284
670.165
680.669
690.705
70.302
700.0101
710.0302
720.476
730.18
740.186
750.344
760.44
770.278
780.488
790.304
80.124
800.114
810.257
820.0403
830.818
840.96
850.0357
860.663
870.246
880.572
890.142
90.21
900.155
910.137
920.0267
930.288
940.047
950.713
960.027
970.664
980.316
990.693



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12824


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002322 (embryonic stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101581 (embryonic stem cell line sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0000400 (H9 embryonic stem cell line sample)
0100669 (embryonic cell line sample)
0000592 (human H9 Embryonic Stem cells sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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