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{{f5samples
 
{{f5samples
 
|DRA_sample_Accession=CAGE@DRS008995
 
|DRA_sample_Accession=CAGE@DRS008995
 +
|accession_numbers=CAGE;DRX009132;DRR010006;DRZ001431;DRZ002814
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002021,UBERON:0000411,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0002021,UBERON:0000411,UBERON:0000956,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0003528,UBERON:0002791,UBERON:0000467,UBERON:0002619,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0002780,UBERON:0002020,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001869,UBERON:0001893,UBERON:0001890,UBERON:0000203,UBERON:0001950
 
|ancestors_in_cell_lineage_facet=
 
|ancestors_in_cell_lineage_facet=
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|is_a=EFO:0002091;;FF:0011268
 
|is_a=EFO:0002091;;FF:0011268
 
|is_obsolete=
 
|is_obsolete=
 +
|library_id=CNhs13031
 
|library_ids=CNhs13031
 
|library_ids=CNhs13031
 
|name=visual cortex - wildtype, neonate N15, donor1
 
|name=visual cortex - wildtype, neonate N15, donor1
Line 85: Line 87:
 
|top_motifs=PAX6:3.03089933075;POU1F1:2.99109997673;EGR1..3:2.86589109227;CUX2:2.86189747146;ZFP161:2.82853555875;POU3F1..4:2.80640571662;AHR_ARNT_ARNT2:2.80400645874;REST:2.63519117917;PRRX1,2:2.54147335916;OCT4_SOX2{dimer}:2.53107007949;EVI1:2.42627341995;ZBTB6:2.42339588708;NHLH1,2:2.42149302225;PAX4:2.37294390245;MYFfamily:2.33317896877;MED-1{core}:2.33182562946;PRDM1:2.23072355965;AIRE:2.12005138401;LMO2:2.09153405339;HOXA9_MEIS1:2.04596660331;BREu{core}:2.0120470323;HMGA1,2:2.00908159108;KLF4:1.99863292249;ZBTB16:1.97634420896;UFEwm:1.94790866873;PBX1:1.90503514796;FOXQ1:1.89721815246;MTF1:1.87520037552;ATF5_CREB3:1.83882982369;ATF2:1.82467422949;JUN:1.73806103314;CREB1:1.7374271041;DBP:1.7318948561;HIC1:1.72365424753;ARID5B:1.69827465106;RREB1:1.64863319241;POU6F1:1.64416811758;MAFB:1.64245711421;RFX1:1.6231054908;TFAP2B:1.61946442134;GATA4:1.59141322715;TEF:1.58603455596;NKX6-1,2:1.5367523767;GZF1:1.53619779397;PAX5:1.47139047106;NKX2-2,8:1.44076501894;MTE{core}:1.42203290712;GFI1B:1.40901766556;TFDP1:1.39320925508;TAL1_TCF{3,4,12}:1.33194439246;ZNF384:1.32951051058;CDX1,2,4:1.31465857007;PAX8:1.30848342737;NRF1:1.29238698762;MZF1:1.24056937231;SMAD1..7,9:1.23340737619;TGIF1:1.23207580491;IKZF1:1.21477540339;HOX{A4,D4}:1.20965279798;STAT1,3:1.20913716555;ALX1:1.20851289564;GTF2I:1.19469317315;RFX2..5_RFXANK_RFXAP:1.19187235788;NANOG:1.15646420618;ZIC1..3:1.11865475577;NKX3-2:1.05741244107;CDC5L:1.02420417437;RBPJ:1.00414348744;FOXD3:0.987419366025;HAND1,2:0.967069878522;PPARG:0.929463782805;BPTF:0.921951334215;FOX{F1,F2,J1}:0.91896762143;EN1,2:0.914229836619;NFE2L2:0.908506775837;SPZ1:0.902333445043;ONECUT1,2:0.897015103105;NFIL3:0.89097060831;NKX2-3_NKX2-5:0.883837627424;SOX2:0.866282839329;bHLH_family:0.851679601394;NR3C1:0.833518023232;HOX{A5,B5}:0.804080931396;MYOD1:0.779224304309;VSX1,2:0.717099053894;HES1:0.679150209647;ZEB1:0.679011727057;TFAP2{A,C}:0.659453516931;POU5F1:0.643682385294;GLI1..3:0.630287960561;PATZ1:0.598340629489;RORA:0.598076683969;IRF7:0.54117607134;MAZ:0.519620568817;FOXN1:0.493978119933;LHX3,4:0.452687081071;NKX3-1:0.431133913448;SOX{8,9,10}:0.429441818325;HIF1A:0.40148666573;NFE2L1:0.39619446272;ATF4:0.385376946715;IKZF2:0.373693096195;FOXP1:0.367192589716;ZNF143:0.282599796233;SREBF1,2:0.255667764407;ADNP_IRX_SIX_ZHX:0.20829710177;FOXM1:0.139721230268;FOXA2:0.138496138027;NKX2-1,4:0.135779584051;NFE2:0.123092592195;FOXP3:0.0739960545819;STAT2,4,6:-0.112725607355;MEF2{A,B,C,D}:-0.133119998166;SNAI1..3:-0.226522622687;GTF2A1,2:-0.235287937508;HBP1_HMGB_SSRP1_UBTF:-0.241466987495;FOXL1:-0.281327228752;TOPORS:-0.302331399377;ESRRA:-0.315011948739;PAX2:-0.397562988332;ZNF238:-0.405024653375;HMX1:-0.455990984418;LEF1_TCF7_TCF7L1,2:-0.492085221899;MYB:-0.50066493405;MYBL2:-0.517920442719;EP300:-0.522126492059;HSF1,2:-0.522376887515;EBF1:-0.556050340824;SOX17:-0.600399784374;ZNF423:-0.605212482467;ATF6:-0.61186447384;PDX1:-0.633587214047;TFAP4:-0.641222528486;NFATC1..3:-0.657436814511;NANOG{mouse}:-0.694880051124;POU2F1..3:-0.727363155353;TLX1..3_NFIC{dimer}:-0.746632772213;YY1:-0.789667737104;ZNF148:-0.814429086311;TBX4,5:-0.815975735947;FOS_FOS{B,L1}_JUN{B,D}:-0.884094456338;ELK1,4_GABP{A,B1}:-0.896580708401;SOX5:-0.901314739468;NR6A1:-0.902687182286;HNF1A:-0.902808569983;FOSL2:-0.905981868221;GCM1,2:-0.913897446195;CEBPA,B_DDIT3:-0.915331166984;CRX:-0.920785747618;AR:-0.941799828374;SPI1:-0.953550647132;RUNX1..3:-0.996538372967;GATA6:-1.00012563173;HNF4A_NR2F1,2:-1.06544615116;T:-1.06561887118;SP1:-1.08725671653;PITX1..3:-1.09028838973;NFKB1_REL_RELA:-1.09670551887;BACH2:-1.11723474772;NR5A1,2:-1.15158758764;XCPE1{core}:-1.20289901597;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27014416813;TFCP2:-1.30783013303;NFY{A,B,C}:-1.31129629833;NR1H4:-1.38483555954;TEAD1:-1.4169690407;GFI1:-1.43118903399;SPIB:-1.43423145401;ALX4:-1.46279623221;PAX1,9:-1.46951472569;HLF:-1.52419504316;FOX{I1,J2}:-1.52791588304;ETS1,2:-1.53180085358;IRF1,2:-1.59072362975;TBP:-1.60605508283;ELF1,2,4:-1.85866689573;DMAP1_NCOR{1,2}_SMARC:-1.85903434984;E2F1..5:-1.86312682904;TLX2:-1.88848091831;SRF:-1.98486722639;ESR1:-2.00109353834;RXRA_VDR{dimer}:-2.05024905808;FOXO1,3,4:-2.08817817602;NFIX:-2.14702792546;RXR{A,B,G}:-2.20913675648;FOX{D1,D2}:-2.2430097911;TP53:-2.26099137288;STAT5{A,B}:-2.26658557934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.41497822169
 
|top_motifs=PAX6:3.03089933075;POU1F1:2.99109997673;EGR1..3:2.86589109227;CUX2:2.86189747146;ZFP161:2.82853555875;POU3F1..4:2.80640571662;AHR_ARNT_ARNT2:2.80400645874;REST:2.63519117917;PRRX1,2:2.54147335916;OCT4_SOX2{dimer}:2.53107007949;EVI1:2.42627341995;ZBTB6:2.42339588708;NHLH1,2:2.42149302225;PAX4:2.37294390245;MYFfamily:2.33317896877;MED-1{core}:2.33182562946;PRDM1:2.23072355965;AIRE:2.12005138401;LMO2:2.09153405339;HOXA9_MEIS1:2.04596660331;BREu{core}:2.0120470323;HMGA1,2:2.00908159108;KLF4:1.99863292249;ZBTB16:1.97634420896;UFEwm:1.94790866873;PBX1:1.90503514796;FOXQ1:1.89721815246;MTF1:1.87520037552;ATF5_CREB3:1.83882982369;ATF2:1.82467422949;JUN:1.73806103314;CREB1:1.7374271041;DBP:1.7318948561;HIC1:1.72365424753;ARID5B:1.69827465106;RREB1:1.64863319241;POU6F1:1.64416811758;MAFB:1.64245711421;RFX1:1.6231054908;TFAP2B:1.61946442134;GATA4:1.59141322715;TEF:1.58603455596;NKX6-1,2:1.5367523767;GZF1:1.53619779397;PAX5:1.47139047106;NKX2-2,8:1.44076501894;MTE{core}:1.42203290712;GFI1B:1.40901766556;TFDP1:1.39320925508;TAL1_TCF{3,4,12}:1.33194439246;ZNF384:1.32951051058;CDX1,2,4:1.31465857007;PAX8:1.30848342737;NRF1:1.29238698762;MZF1:1.24056937231;SMAD1..7,9:1.23340737619;TGIF1:1.23207580491;IKZF1:1.21477540339;HOX{A4,D4}:1.20965279798;STAT1,3:1.20913716555;ALX1:1.20851289564;GTF2I:1.19469317315;RFX2..5_RFXANK_RFXAP:1.19187235788;NANOG:1.15646420618;ZIC1..3:1.11865475577;NKX3-2:1.05741244107;CDC5L:1.02420417437;RBPJ:1.00414348744;FOXD3:0.987419366025;HAND1,2:0.967069878522;PPARG:0.929463782805;BPTF:0.921951334215;FOX{F1,F2,J1}:0.91896762143;EN1,2:0.914229836619;NFE2L2:0.908506775837;SPZ1:0.902333445043;ONECUT1,2:0.897015103105;NFIL3:0.89097060831;NKX2-3_NKX2-5:0.883837627424;SOX2:0.866282839329;bHLH_family:0.851679601394;NR3C1:0.833518023232;HOX{A5,B5}:0.804080931396;MYOD1:0.779224304309;VSX1,2:0.717099053894;HES1:0.679150209647;ZEB1:0.679011727057;TFAP2{A,C}:0.659453516931;POU5F1:0.643682385294;GLI1..3:0.630287960561;PATZ1:0.598340629489;RORA:0.598076683969;IRF7:0.54117607134;MAZ:0.519620568817;FOXN1:0.493978119933;LHX3,4:0.452687081071;NKX3-1:0.431133913448;SOX{8,9,10}:0.429441818325;HIF1A:0.40148666573;NFE2L1:0.39619446272;ATF4:0.385376946715;IKZF2:0.373693096195;FOXP1:0.367192589716;ZNF143:0.282599796233;SREBF1,2:0.255667764407;ADNP_IRX_SIX_ZHX:0.20829710177;FOXM1:0.139721230268;FOXA2:0.138496138027;NKX2-1,4:0.135779584051;NFE2:0.123092592195;FOXP3:0.0739960545819;STAT2,4,6:-0.112725607355;MEF2{A,B,C,D}:-0.133119998166;SNAI1..3:-0.226522622687;GTF2A1,2:-0.235287937508;HBP1_HMGB_SSRP1_UBTF:-0.241466987495;FOXL1:-0.281327228752;TOPORS:-0.302331399377;ESRRA:-0.315011948739;PAX2:-0.397562988332;ZNF238:-0.405024653375;HMX1:-0.455990984418;LEF1_TCF7_TCF7L1,2:-0.492085221899;MYB:-0.50066493405;MYBL2:-0.517920442719;EP300:-0.522126492059;HSF1,2:-0.522376887515;EBF1:-0.556050340824;SOX17:-0.600399784374;ZNF423:-0.605212482467;ATF6:-0.61186447384;PDX1:-0.633587214047;TFAP4:-0.641222528486;NFATC1..3:-0.657436814511;NANOG{mouse}:-0.694880051124;POU2F1..3:-0.727363155353;TLX1..3_NFIC{dimer}:-0.746632772213;YY1:-0.789667737104;ZNF148:-0.814429086311;TBX4,5:-0.815975735947;FOS_FOS{B,L1}_JUN{B,D}:-0.884094456338;ELK1,4_GABP{A,B1}:-0.896580708401;SOX5:-0.901314739468;NR6A1:-0.902687182286;HNF1A:-0.902808569983;FOSL2:-0.905981868221;GCM1,2:-0.913897446195;CEBPA,B_DDIT3:-0.915331166984;CRX:-0.920785747618;AR:-0.941799828374;SPI1:-0.953550647132;RUNX1..3:-0.996538372967;GATA6:-1.00012563173;HNF4A_NR2F1,2:-1.06544615116;T:-1.06561887118;SP1:-1.08725671653;PITX1..3:-1.09028838973;NFKB1_REL_RELA:-1.09670551887;BACH2:-1.11723474772;NR5A1,2:-1.15158758764;XCPE1{core}:-1.20289901597;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.27014416813;TFCP2:-1.30783013303;NFY{A,B,C}:-1.31129629833;NR1H4:-1.38483555954;TEAD1:-1.4169690407;GFI1:-1.43118903399;SPIB:-1.43423145401;ALX4:-1.46279623221;PAX1,9:-1.46951472569;HLF:-1.52419504316;FOX{I1,J2}:-1.52791588304;ETS1,2:-1.53180085358;IRF1,2:-1.59072362975;TBP:-1.60605508283;ELF1,2,4:-1.85866689573;DMAP1_NCOR{1,2}_SMARC:-1.85903434984;E2F1..5:-1.86312682904;TLX2:-1.88848091831;SRF:-1.98486722639;ESR1:-2.00109353834;RXRA_VDR{dimer}:-2.05024905808;FOXO1,3,4:-2.08817817602;NFIX:-2.14702792546;RXR{A,B,G}:-2.20913675648;FOX{D1,D2}:-2.2430097911;TP53:-2.26099137288;STAT5{A,B}:-2.26658557934;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-2.41497822169
 
|xref=
 
|xref=
}} {{DRAAccessionNumbers
 
|DRA_sample_Accession=CAGE@DRS008995
 
|accession_numbers=DRX009132;DRR010006;DRZ001431;DRZ002814;CAGE
 
|library_id=CNhs13031
 
 
}}
 
}}

Revision as of 06:52, 17 October 2013


Name:visual cortex - wildtype, neonate N15, donor1
Species:Mouse (Mus musculus)
Library ID:CNhs13031
Sample type:tissues
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueVisual cortex
dev stagepostnatal day 15
sexmale
ageP15
cell typemixed
cell lineN/A
companyN/A
collaborationMichela Fagiolini/Alka Saxena/Piero Carninci
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberN/A
catalog numberN/A
sample typeVisual cortex tissue
extraction protocol (Details)Total RNA Trizol Qiagen minElute

Accession numbers
MethodSample accession id
CAGE  DRS008995
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13031 CAGE DRX009132 DRR010006
Accession ID Mm9

Library idBAMCTSS
CNhs13031 DRZ001431 DRZ002814
Download raw sequence, BAM & CTSS
Mm9
BAMCTSS
[{{{mm9bam}}} download][{{{mm9ctss}}} donwload]
Mm10
BAMCTSS
[{{{mm10bam}}} download][{{{mm10ctss}}} donwload]


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

CNhs13031

MCL coexpression id Coexpression dpi cluster scores median value
0 0
1 0.823
10 0
100 0
1000 0
1001 0.0131
1002 --0.0479
1003 0.373
1004 0
1005 0.0209
1006 0.65
1007 --0.216
1008 0
1009 --0.19
101 --0.0664
1010 0
1011 0.918
1012 0.582
1013 0.0875
1014 0
1015 --0.00509
1016 --0.151
1017 0
1018 0
1019 0
102 0
1020 0.582
1021 0
1022 --0.0704
1023 0
1024 --0.113
1025 0
1026 0
1027 0.46
1028 0
1029 0.423
103 --0.0829
1030 0
1031 --0.568
1032 0.118
1033 0
1034 0
1035 0
1036 --0.0705
1037 0
1038 0.0309
1039 --0.0381
104 0
1040 --0.257
1041 0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13031

Jaspar motif P-value
MA0002.2 0.0325
MA0003.1 0.268
MA0004.1 0.574
MA0006.1 0.0924
MA0007.1 0.329
MA0009.1 0.927
MA0014.1 0.563
MA0017.1 1.26537e-6
MA0018.2 0.0139
MA0019.1 0.0905
MA0024.1 0.0208
MA0025.1 0.532
MA0027.1 0.064
MA0028.1 0.034
MA0029.1 0.923
MA0030.1 0.702
MA0031.1 0.0111
MA0035.2 0.0182
MA0038.1 0.903
MA0039.2 0.00321
MA0040.1 0.073
MA0041.1 0.436
MA0042.1 0.514
MA0043.1 0.763
MA0046.1 3.35247e-10
MA0047.2 1.98753e-4
MA0048.1 0.0635
MA0050.1 1.6123e-5
MA0051.1 4.8664e-4
MA0052.1 0.656
MA0055.1 0.0136
MA0057.1 0.468
MA0058.1 0.332
MA0059.1 0.277
MA0060.1 0.072
MA0061.1 0.0673
MA0062.2 1.28165e-4
MA0065.2 1.37103e-6
MA0066.1 0.124
MA0067.1 0.553
MA0068.1 0.153
MA0069.1 0.0446
MA0070.1 0.841
MA0071.1 0.0403
MA0072.1 0.121
MA0073.1 0.821
MA0074.1 0.108
MA0076.1 0.0683
MA0077.1 0.654
MA0078.1 0.994
MA0079.2 0.985
MA0080.2 1.86874e-10
MA0081.1 0.151
MA0083.1 0.00181
MA0084.1 0.672
MA0087.1 0.428
MA0088.1 0.342
MA0090.1 0.0693
MA0091.1 0.26
MA0092.1 0.318
MA0093.1 0.553
MA0099.2 4.35974e-4
MA0100.1 0.381
MA0101.1 0.0163
MA0102.2 0.271
MA0103.1 0.269
MA0104.2 0.864
MA0105.1 0.101
MA0106.1 0.0892
MA0107.1 0.0445
MA0108.2 4.69382e-5
MA0111.1 0.795
MA0112.2 0.00128
MA0113.1 0.215
MA0114.1 4.0741e-6
MA0115.1 5.94291e-4
MA0116.1 0.178
MA0117.1 0.793
MA0119.1 0.113
MA0122.1 0.71
MA0124.1 0.778
MA0125.1 0.443
MA0131.1 0.682
MA0135.1 0.185
MA0136.1 7.03549e-12
MA0137.2 0.073
MA0138.2 0.00514
MA0139.1 0.478
MA0140.1 0.00542
MA0141.1 0.00134
MA0142.1 0.459
MA0143.1 0.611
MA0144.1 0.0514
MA0145.1 0.071
MA0146.1 0.0114
MA0147.1 0.922
MA0148.1 1.15082e-4
MA0149.1 0.347
MA0150.1 0.15
MA0152.1 0.995
MA0153.1 2.10701e-10
MA0154.1 0.0751
MA0155.1 0.336
MA0156.1 7.38329e-12
MA0157.1 0.0213
MA0159.1 0.00855
MA0160.1 0.00472
MA0162.1 0.166
MA0163.1 0.00372
MA0164.1 0.938
MA0258.1 0.0293
MA0259.1 0.708



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs13031

Novel motif P-value
1 0.421
10 0.126
100 0.462
101 0.414
102 0.834
103 0.145
104 0.992
105 0.412
106 0.0412
107 0.102
108 0.393
109 0.00311
11 0.0557
110 0.064
111 0.395
112 0.0123
113 0.366
114 0.587
115 0.86
116 0.368
117 0.00979
118 0.595
119 0.185
12 0.583
120 0.866
121 0.111
122 0.996
123 0.00133
124 0.0457
125 0.985
126 0.0446
127 0.606
128 0.0569
129 0.475
13 5.10364e-9
130 0.0285
131 0.352
132 0.558
133 0.329
134 0.0969
135 0.275
136 0.00204
137 0.442
138 0.731
139 0.839
14 0.794
140 0.668
141 0.709
142 0.662
143 0.508
144 0.655
145 2.98394e-4
146 0.202
147 0.0637
148 0.384
149 0.405
15 0.218
150 0.0346
151 0.788
152 0.0614
153 0.664
154 0.953
155 0.567
156 1.33525e-8
157 0.234
158 0.497
159 0.224
160 0.316
161 0.0609
162 0.687
163 0.898
164 0.144
165 0.115
166 0.537
167 0.221
168 0.592
169 0.00412
17 0.0546
18 0.85
19 0.0522
2 0.986
20 0.076
21 0.192
22 0.0786
23 0.667
24 0.0194
25 0.918
26 7.02705e-7
27 0.595
28 0.586
29 0.0565
3 0.0584
30 0.875
31 0.744
32 0.796
33 0.139
34 0.525
35 0.441
36 0.552
37 0.0166
38 0.379
39 0.195
4 0.226
40 0.121
41 0.637
42 0.202
43 0.117
44 0.784
45 0.51
46 0.243
47 0.354
48 0.305
49 0.338
5 0.371
50 0.2
51 0.702
52 0.172
53 0.723
54 0.96
55 0.967
56 0.45
57 0.79
58 0.415
59 0.12
6 0.943
60 0.0258
61 0.0278
62 0.284
63 0.138
64 0.678
65 0.23
66 0.489
67 0.761
68 0.201
69 0.241
7 0.0182
70 0.343
71 0.0137
72 0.39
73 0.0168
74 0.632
75 0.0602
76 0.65
77 0.366
78 0.0017
79 0.749
8 0.192
80 0.775
81 0.685
82 0.394
83 0.0449
84 0.771
85 0.234
86 0.17
87 0.00208
88 0.541
89 0.88
9 0.321
90 0.637
91 0.437
92 0.522
93 0.595
94 0.748
95 0.0206
96 0.57
97 0.91
98 0.504
99 0.392



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs13031


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0002021 (occipital lobe)
0000411 (visual cortex)
0000956 (cerebral cortex)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0003528 (brain grey matter)
0002791 (regional part of telencephalon)
0000467 (anatomical system)
0002619 (regional part of cerebral cortex)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002020 (gray matter)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001869 (cerebral hemisphere)
0001893 (telencephalon)
0001890 (forebrain)
0000203 (pallium)
0001950 (neocortex)

FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
0000303 (neonate sample - mouse)
0000316 (mouse neonate N15 sample)
0011268 (mouse visual cortex from wildtype- neonate N15 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
FF:0000294 (mouse embryonic day 11 sample)