FF:10435-106E3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004765 | |DRA_sample_Accession=CAGE@SAMD00004765 | ||
|accession_numbers=CAGE;DRX007791;DRR008663;DRZ000088;DRZ001473 | |accession_numbers=CAGE;DRX007791;DRR008663;DRZ000088;DRZ001473;DRZ011438;DRZ012823 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000219,CL:0000738,CL:0000255 | ||
Line 53: | Line 53: | ||
|microRNAs= | |microRNAs= | ||
|microRNAs_nn= | |microRNAs_nn= | ||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/ | |microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10435 | ||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/ | |microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10435 | ||
|name=Hodgkin's lymphoma cell line:HD-Mar2 | |name=Hodgkin's lymphoma cell line:HD-Mar2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 62: | Line 62: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |refex=http://refex.dbcls.jp/genelist.php?lang | ||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.114515268119704,0.506141682690719,-0.118558603003605,0.377314370382196,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0.158803529189909,0,-0.153323010348428,0,0,0,0.0794017645949545,0,0.513791075332295,0,0,0.30887241007512,0,0,0,0,0,0,0,0,0,0,0,0,0.116656481243703,0.366308867229522,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.108156333892169,0,0.89552854962674,0,0,0.177489670992994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124365950687632,0,0,0,0,0,0,-0.388512941473307,0,0,0,0.094490468569711,-0.0523938735059595,0,0,0,0,-0.0980353512377064,0.475371968574137,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0.120444819775539,0,0,0,-0.00891337770659462,-0.025277345063574,0,0,0.158803529189909,0,0,0 | |repeat_enrich_byfamily=0,0,0,0,0,0,0,0.114515268119704,0.506141682690719,-0.118558603003605,0.377314370382196,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0.158803529189909,0,-0.153323010348428,0,0,0,0.0794017645949545,0,0.513791075332295,0,0,0.30887241007512,0,0,0,0,0,0,0,0,0,0,0,0,0.116656481243703,0.366308867229522,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,-0.108156333892169,0,0.89552854962674,0,0,0.177489670992994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124365950687632,0,0,0,0,0,0,-0.388512941473307,0,0,0,0.094490468569711,-0.0523938735059595,0,0,0,0,-0.0980353512377064,0.475371968574137,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0.120444819775539,0,0,0,-0.00891337770659462,-0.025277345063574,0,0,0.158803529189909,0,0,0 | ||
|repeat_enrich_byname=0,0,0.158803529189909,0,-0.0980353512377064,0,0,0.366308867229522,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.474086218752008,0.131318155682619,0,0,-0.347877322314616,0,0,0,0,0.158803529189909,0,0,0,0,-0.128119866952565,0,0.108390977600594,0,0,0,0,0.0297597102324067,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.0493261694073335,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.192683968571468,0.0996318835292477,0,0,0,-0.484767735459416,-0.652070046163366,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.535063216388204,-0.248868050382253,0,0.0206957393585035,0,0.158803529189909,0,0,0,0.27483329820609,0,0,0,0,0,-0.0574934668214365,0.369644524633438,0,0,0,0,-0.252532962348632,0,-0.0398509694571393,-0.373286155956567,-0.174746979188611,0.0212736032144953,0.314706985864737,0,-0.302389727009913,-0.321071796031498,-0.359830942042338,0.094490468569711,-0.147401849371139,-0.189981719549847,0,-0.421874177529922,-0.786272629114012,-0.060903872837781,-0.388512941473307,0.0236154225067586,-1.2314085082871,0.232585551882574,0,0,-0.0775089264793031,-0.202996275541947,0,0,-0.490114714476774,-0.054002935170457,-0.67098743647571,-0.881500983864423,-0.245353731507053,0.273743813826669,0.288598277176468,-0.182603154690504,0,0.517709435791237,-0.033856638469339,0,-0.0879523981800832,-0.0829457572569043,-0.129650495841046,0.335819021661126,0,0.315194658540354,-0.0683442610773682,0,-0.576735188989078,-0.0419779185592393,0,-0.256766239448829,-0.13694823101743,0,0,0.27483329820609,0,0,0.41961876567035,0.490386050539777,0.0419777366505457,0,-0.0532819664464135,0.0327109035170097,0.130790760663201,0,-0.147311552085719,-0.202170761610805,-0.169936752918903,0.365162365614746,0,0.0229563053559853,-0.696661868948113,-0.164990696339003,-0.263591276201828,0.307862040417697,0.0687001865756038,0.24326454308948,-0.0967072201612154,-0.0923067434778192,0,-0.0881268324752877,0,-0.271795778918028,-0.679498131621524,0.0447112295268879,0.0807343323173785,0,-0.737119935945896,0,0.161255717010808,0,0.00209976487796804,-0.0342920687825214,0.752951322947378,0.144828694284638,0,-0.0454175577407211,-0.788130937773974,0,-0.641734783208894,-0.00433542193383893,0,-0.150367083334639,-0.697695966512583,-0.211650427864589,-0.0015728075761494,0,-0.790080158389657,0,0,-0.22224614085317,0.27066564492633,0,0.479914175548707,0.124365950687632,-0.237907173965772,0.250337793794588,0,0,-0.645700337992725,0,0,-0.447124534628121,-0.0176870357976068,0.0768497973537738,0.443306779825652,0,-0.108622809454255,0,0,-0.177527765965176,0.767608046190038,0.0849279019985615,0,0,-0.249881296598824,-0.0705513119151602,0,0,0,0.0481867180327694,0,-0.0589565109853561,0,0,0.212092160466118,0,0,0.350879433211436,0.0869956696375339,0,-0.180776452265071,0,0,0,0,0,0,0,0,-0.895697717507269,0.104572590481096,0.15181588252967,0,0,0,0,-0.0569198733635656,0.238592437759258,0,0.142970591708459,0,0,0,0,0.188692308416879,0,0,0.137416649103045,0.216818413697999,0.101073072136245,-0.0797926575537287,0,0,0,0.950743937148275,0,0,0,0,-0.167486893798736,0,0,-0.473126644196471,0,-0.0729693003960468,0.193251418659249,0,0.339092024791546,-0.426719079193044,-0.803478657957743,0,0,-0.261347131789888,0,0,-0.153878426088409,-0.0823702229656663,0,0,0,0,0,0,0,0,0.0605187858063349,0,0,0,0,0,0,0,0,0,0,0,-0.745124899975011,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.204409407780287,0,0,0,0,0,0,0,0,0.0347157430274766,0,0,0,0,0,0.89552854962674,0,0,0,0,0.754628740764391,0,0,-0.118558603003605,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354844431544613,-0.200006601941911,0,0,0,0,0,0.506141682690719,0,0,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.114515268119704,0,0,0,0,0,0.0628441218163222,0.25307084134536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.526845795711958,-0.0247755787802223,-0.128403986783001,-0.0568589461625992,0,0,-0.232628352633041,0,0.200235078529555,0,0,0,0,0.106076225074518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102558605297957,0,0,0,0,0,0,0,0.513791075332295,0,0,0.298454680647879,0,0,0,0,0,0,0.140100000359077,-0.283220399823148,-0.104292291577665,0,0,0,-0.054385572482455,0,0,-0.191142455090553,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0.0794017645949545,0,0,0,0,0,0,0.430216826187086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0.361810531585343,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.562147511695483,0,0.366308867229522,0,0,0,0,0,0,0,0,0,0,0,0.27483329820609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366308867229522,0,0,0,-0.0391199997208722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393606924614928,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.27483329820609,0,0,0,0,1.22877530753719,0,0,0,0,0.648996010651488,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926137007292372,0,0,0.146199710739548,0,0,0,0,0,0,0,0,0,0,0,0,0.0974833500397826,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0329737896600683,-0.025277345063574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0794017645949545,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11010983240111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0.10771972673037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0794017645949545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506141682690719,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.27483329820609,0.158803529189909,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0820861103611685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0.366308867229522,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,-0.0778346496915525,0,0,0,0,0,0,0,0.0361075321929081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404337057498225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0476851785465713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137416649103045,0,0,0,0,0,0.362087001189004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177489670992994,0,0.137416649103045,0,0,0,0.183154433614761,0,0,0,0,0,0,0,0,0,0.441828999853982,0,0,0,0,0,0.30887241007512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157871965527235,0,0,-0.0422874684771159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0.0214650267660147,0,0,0,0,0,0,0.27483329820609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282075416372517,0,0.696606932586288,0.431522075589698,0,0,0.572164557526965,0,0.11999884010495,0.27483329820609,0,0,-0.01618936590039,0.271172994278245,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0.158803529189909,0,-0.0568589461625992,0.0968332316349532,0,0.668580808012386,0,0,-0.0781053106522872,0,0,0,-0.0959594073735869 | |repeat_enrich_byname=0,0,0.158803529189909,0,-0.0980353512377064,0,0,0.366308867229522,0,0,0,0,0,0,0,0,-0.247178875285564,0,-0.474086218752008,0.131318155682619,0,0,-0.347877322314616,0,0,0,0,0.158803529189909,0,0,0,0,-0.128119866952565,0,0.108390977600594,0,0,0,0,0.0297597102324067,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,-0.0493261694073335,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,-0.192683968571468,0.0996318835292477,0,0,0,-0.484767735459416,-0.652070046163366,0,0,-0.121779851751874,-0.181349618560659,0,0,-0.391044581551635,0,-0.535063216388204,-0.248868050382253,0,0.0206957393585035,0,0.158803529189909,0,0,0,0.27483329820609,0,0,0,0,0,-0.0574934668214365,0.369644524633438,0,0,0,0,-0.252532962348632,0,-0.0398509694571393,-0.373286155956567,-0.174746979188611,0.0212736032144953,0.314706985864737,0,-0.302389727009913,-0.321071796031498,-0.359830942042338,0.094490468569711,-0.147401849371139,-0.189981719549847,0,-0.421874177529922,-0.786272629114012,-0.060903872837781,-0.388512941473307,0.0236154225067586,-1.2314085082871,0.232585551882574,0,0,-0.0775089264793031,-0.202996275541947,0,0,-0.490114714476774,-0.054002935170457,-0.67098743647571,-0.881500983864423,-0.245353731507053,0.273743813826669,0.288598277176468,-0.182603154690504,0,0.517709435791237,-0.033856638469339,0,-0.0879523981800832,-0.0829457572569043,-0.129650495841046,0.335819021661126,0,0.315194658540354,-0.0683442610773682,0,-0.576735188989078,-0.0419779185592393,0,-0.256766239448829,-0.13694823101743,0,0,0.27483329820609,0,0,0.41961876567035,0.490386050539777,0.0419777366505457,0,-0.0532819664464135,0.0327109035170097,0.130790760663201,0,-0.147311552085719,-0.202170761610805,-0.169936752918903,0.365162365614746,0,0.0229563053559853,-0.696661868948113,-0.164990696339003,-0.263591276201828,0.307862040417697,0.0687001865756038,0.24326454308948,-0.0967072201612154,-0.0923067434778192,0,-0.0881268324752877,0,-0.271795778918028,-0.679498131621524,0.0447112295268879,0.0807343323173785,0,-0.737119935945896,0,0.161255717010808,0,0.00209976487796804,-0.0342920687825214,0.752951322947378,0.144828694284638,0,-0.0454175577407211,-0.788130937773974,0,-0.641734783208894,-0.00433542193383893,0,-0.150367083334639,-0.697695966512583,-0.211650427864589,-0.0015728075761494,0,-0.790080158389657,0,0,-0.22224614085317,0.27066564492633,0,0.479914175548707,0.124365950687632,-0.237907173965772,0.250337793794588,0,0,-0.645700337992725,0,0,-0.447124534628121,-0.0176870357976068,0.0768497973537738,0.443306779825652,0,-0.108622809454255,0,0,-0.177527765965176,0.767608046190038,0.0849279019985615,0,0,-0.249881296598824,-0.0705513119151602,0,0,0,0.0481867180327694,0,-0.0589565109853561,0,0,0.212092160466118,0,0,0.350879433211436,0.0869956696375339,0,-0.180776452265071,0,0,0,0,0,0,0,0,-0.895697717507269,0.104572590481096,0.15181588252967,0,0,0,0,-0.0569198733635656,0.238592437759258,0,0.142970591708459,0,0,0,0,0.188692308416879,0,0,0.137416649103045,0.216818413697999,0.101073072136245,-0.0797926575537287,0,0,0,0.950743937148275,0,0,0,0,-0.167486893798736,0,0,-0.473126644196471,0,-0.0729693003960468,0.193251418659249,0,0.339092024791546,-0.426719079193044,-0.803478657957743,0,0,-0.261347131789888,0,0,-0.153878426088409,-0.0823702229656663,0,0,0,0,0,0,0,0,0.0605187858063349,0,0,0,0,0,0,0,0,0,0,0,-0.745124899975011,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,0.204409407780287,0,0,0,0,0,0,0,0,0.0347157430274766,0,0,0,0,0,0.89552854962674,0,0,0,0,0.754628740764391,0,0,-0.118558603003605,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0354844431544613,-0.200006601941911,0,0,0,0,0,0.506141682690719,0,0,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,0.114515268119704,0,0,0,0,0,0.0628441218163222,0.25307084134536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.526845795711958,-0.0247755787802223,-0.128403986783001,-0.0568589461625992,0,0,-0.232628352633041,0,0.200235078529555,0,0,0,0,0.106076225074518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102558605297957,0,0,0,0,0,0,0,0.513791075332295,0,0,0.298454680647879,0,0,0,0,0,0,0.140100000359077,-0.283220399823148,-0.104292291577665,0,0,0,-0.054385572482455,0,0,-0.191142455090553,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0.0794017645949545,0,0,0,0,0,0,0.430216826187086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0.361810531585343,0,0,0,-0.213086229657044,0,0,0,0,0,0,0.562147511695483,0,0.366308867229522,0,0,0,0,0,0,0,0,0,0,0,0.27483329820609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.366308867229522,0,0,0,-0.0391199997208722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393606924614928,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0.27483329820609,0,0,0,0,1.22877530753719,0,0,0,0,0.648996010651488,0,0,0,0,0,0,0,-0.087428497801853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.926137007292372,0,0,0.146199710739548,0,0,0,0,0,0,0,0,0,0,0,0,0.0974833500397826,0,0,0,0,0,0,0,0,0,0,-0.0484300422256687,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0329737896600683,-0.025277345063574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0794017645949545,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11010983240111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0.10771972673037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0794017645949545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.506141682690719,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.620396418749604,0,0,0,0,0,0,0,0,0.27483329820609,0.158803529189909,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0820861103611685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0,0,0,0,0.366308867229522,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,-0.0778346496915525,0,0,0,0,0,0,0,0.0361075321929081,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404337057498225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0476851785465713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137416649103045,0,0,0,0,0,0.362087001189004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177489670992994,0,0.137416649103045,0,0,0,0.183154433614761,0,0,0,0,0,0,0,0,0,0.441828999853982,0,0,0,0,0,0.30887241007512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.157871965527235,0,0,-0.0422874684771159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0,0,0,0.0214650267660147,0,0,0,0,0,0,0.27483329820609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282075416372517,0,0.696606932586288,0.431522075589698,0,0,0.572164557526965,0,0.11999884010495,0.27483329820609,0,0,-0.01618936590039,0.271172994278245,0.158803529189909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.158803529189909,0.158803529189909,0,-0.0568589461625992,0.0968332316349532,0,0.668580808012386,0,0,-0.0781053106522872,0,0,0,-0.0959594073735869 | ||
Line 100: | Line 100: | ||
|top_motifs=RBPJ:2.8502295077;E2F1..5:2.71232046641;MYB:2.64596343923;NFY{A,B,C}:2.55580174231;ELK1,4_GABP{A,B1}:2.31944333379;ZNF143:2.06402128007;PAX3,7:2.03665921432;RORA:2.00777251077;PBX1:1.99349361357;IKZF2:1.85102047623;YY1:1.75190337181;NKX6-1,2:1.63871233048;ELF1,2,4:1.60701580199;NRF1:1.59023001924;AIRE:1.58029745273;SOX{8,9,10}:1.56118896384;BREu{core}:1.5375637362;FOXP1:1.41657806333;PITX1..3:1.39368210208;RUNX1..3:1.36277946515;DMAP1_NCOR{1,2}_SMARC:1.26625245067;T:1.23037916249;POU2F1..3:1.19861711173;CDX1,2,4:1.16202633426;GFI1:1.09057414148;HOXA9_MEIS1:1.03578068317;TFDP1:1.02053836908;ZBTB16:0.953301181621;FOXD3:0.93510878339;PAX8:0.924780728114;POU3F1..4:0.908252846826;NR5A1,2:0.880762308116;TOPORS:0.872835794222;CREB1:0.850954325872;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.840730962969;ATF5_CREB3:0.786725073697;POU6F1:0.775200038678;HES1:0.742480451165;PAX6:0.713330296632;BPTF:0.700758711988;GATA6:0.661141420492;LMO2:0.649224622163;EN1,2:0.6457169787;SPZ1:0.619808456565;FOXA2:0.614338293138;TLX2:0.609518565047;NKX2-2,8:0.601274600913;NKX2-1,4:0.555906058684;STAT1,3:0.535440794679;ZNF384:0.518538708471;FOX{F1,F2,J1}:0.501073766349;NANOG:0.487191948263;SPI1:0.478838310063;VSX1,2:0.471096998453;CUX2:0.443783821837;SPIB:0.44198459486;ARID5B:0.431679750884;TGIF1:0.406323019122;ETS1,2:0.385424192534;HOX{A6,A7,B6,B7}:0.381321935622;ALX1:0.375458282952;LEF1_TCF7_TCF7L1,2:0.336407519385;FOX{I1,J2}:0.326076007889;CRX:0.258621904743;ATF4:0.23442452449;SOX2:0.228377576504;FOXO1,3,4:0.179591588966;HOX{A4,D4}:0.149349840047;EVI1:0.129076202409;SNAI1..3:0.127518314442;FOXN1:0.0854763608885;SOX17:0.0663298289384;NANOG{mouse}:0.00426581581702;PAX4:-0.0149979466514;TEF:-0.0365804229197;POU1F1:-0.0410254419185;HBP1_HMGB_SSRP1_UBTF:-0.0485866971804;AR:-0.0493736817005;HAND1,2:-0.0636119504506;PAX2:-0.0636784327236;FOXP3:-0.0774580196419;bHLH_family:-0.0985909749363;PDX1:-0.0997742305186;ZEB1:-0.114307291233;RFX2..5_RFXANK_RFXAP:-0.127509554155;RFX1:-0.141424550822;IRF1,2:-0.167878751993;FOXM1:-0.169135184478;AHR_ARNT_ARNT2:-0.171357870581;FOXQ1:-0.179832882188;OCT4_SOX2{dimer}:-0.182209234927;HNF1A:-0.184208610099;NFE2L1:-0.197233467866;NFKB1_REL_RELA:-0.211964390707;PRRX1,2:-0.219223944928;MYOD1:-0.226151359738;LHX3,4:-0.243813184806;ONECUT1,2:-0.25418502432;MYBL2:-0.271789378504;HOX{A5,B5}:-0.276623481914;NKX3-1:-0.283861922887;STAT5{A,B}:-0.301033341527;HNF4A_NR2F1,2:-0.305008540471;SOX5:-0.313243551266;DBP:-0.377409694816;UFEwm:-0.409588659574;ZFP161:-0.421858417453;NFIL3:-0.495405065505;FOX{D1,D2}:-0.495512631827;ADNP_IRX_SIX_ZHX:-0.501425371471;PAX1,9:-0.511142304042;MYFfamily:-0.523068076141;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.531884368867;NR6A1:-0.539020087781;MEF2{A,B,C,D}:-0.546426273635;SREBF1,2:-0.550550901398;RXR{A,B,G}:-0.576129092459;EP300:-0.606661861526;HMGA1,2:-0.638388753381;MED-1{core}:-0.646255553091;NKX2-3_NKX2-5:-0.660705327659;GATA4:-0.661943487969;SMAD1..7,9:-0.670722684684;NFE2:-0.693036389901;POU5F1:-0.719164267061;IRF7:-0.722590081269;FOSL2:-0.732863379921;ESRRA:-0.734552655233;HLF:-0.744115453719;EGR1..3:-0.788093117908;REST:-0.794102375121;NR1H4:-0.79495706195;NR3C1:-0.802459376582;NFIX:-0.846684233331;HSF1,2:-0.860935588826;KLF4:-0.864479979384;ZIC1..3:-0.871448817212;MZF1:-0.873344802345;FOS_FOS{B,L1}_JUN{B,D}:-0.876491604219;JUN:-0.879618519313;ATF6:-0.887372617057;BACH2:-0.924330051572;CEBPA,B_DDIT3:-0.935890489876;PAX5:-0.938085142882;TAL1_TCF{3,4,12}:-0.93868801851;ZNF238:-0.949344854555;SRF:-0.951733500152;GZF1:-0.972176948473;ZNF148:-0.976997101206;ZNF423:-0.977194367573;GTF2A1,2:-0.98317730598;CDC5L:-1.01864391125;ESR1:-1.02341866409;NKX3-2:-1.04238429261;IKZF1:-1.05263516397;TFAP4:-1.05482209765;GCM1,2:-1.07259504298;RXRA_VDR{dimer}:-1.10993309761;NHLH1,2:-1.11080299096;TBP:-1.11360269372;NFATC1..3:-1.12869599354;FOXL1:-1.19458835092;ATF2:-1.20445173452;MTE{core}:-1.22880943443;RREB1:-1.25222780379;GTF2I:-1.26305419332;PPARG:-1.27029437549;ZBTB6:-1.272548142;ALX4:-1.29193360661;XBP1:-1.2963847739;TEAD1:-1.30593477435;STAT2,4,6:-1.35423038421;HIC1:-1.36842067775;HIF1A:-1.39062917823;TP53:-1.41763635239;PATZ1:-1.42065618006;GFI1B:-1.43954596434;HMX1:-1.4424231242;EBF1:-1.45909584047;MAZ:-1.53683546051;NFE2L2:-1.59501470745;XCPE1{core}:-1.6881050482;PRDM1:-1.7290627492;MTF1:-1.81494597966;MAFB:-1.83379301672;TFAP2B:-1.8518417577;TLX1..3_NFIC{dimer}:-1.92564422515;SP1:-2.16722162555;GLI1..3:-2.2580396237;TBX4,5:-2.6523108349;TFAP2{A,C}:-2.67877605442;TFCP2:-2.80608577912 | |top_motifs=RBPJ:2.8502295077;E2F1..5:2.71232046641;MYB:2.64596343923;NFY{A,B,C}:2.55580174231;ELK1,4_GABP{A,B1}:2.31944333379;ZNF143:2.06402128007;PAX3,7:2.03665921432;RORA:2.00777251077;PBX1:1.99349361357;IKZF2:1.85102047623;YY1:1.75190337181;NKX6-1,2:1.63871233048;ELF1,2,4:1.60701580199;NRF1:1.59023001924;AIRE:1.58029745273;SOX{8,9,10}:1.56118896384;BREu{core}:1.5375637362;FOXP1:1.41657806333;PITX1..3:1.39368210208;RUNX1..3:1.36277946515;DMAP1_NCOR{1,2}_SMARC:1.26625245067;T:1.23037916249;POU2F1..3:1.19861711173;CDX1,2,4:1.16202633426;GFI1:1.09057414148;HOXA9_MEIS1:1.03578068317;TFDP1:1.02053836908;ZBTB16:0.953301181621;FOXD3:0.93510878339;PAX8:0.924780728114;POU3F1..4:0.908252846826;NR5A1,2:0.880762308116;TOPORS:0.872835794222;CREB1:0.850954325872;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.840730962969;ATF5_CREB3:0.786725073697;POU6F1:0.775200038678;HES1:0.742480451165;PAX6:0.713330296632;BPTF:0.700758711988;GATA6:0.661141420492;LMO2:0.649224622163;EN1,2:0.6457169787;SPZ1:0.619808456565;FOXA2:0.614338293138;TLX2:0.609518565047;NKX2-2,8:0.601274600913;NKX2-1,4:0.555906058684;STAT1,3:0.535440794679;ZNF384:0.518538708471;FOX{F1,F2,J1}:0.501073766349;NANOG:0.487191948263;SPI1:0.478838310063;VSX1,2:0.471096998453;CUX2:0.443783821837;SPIB:0.44198459486;ARID5B:0.431679750884;TGIF1:0.406323019122;ETS1,2:0.385424192534;HOX{A6,A7,B6,B7}:0.381321935622;ALX1:0.375458282952;LEF1_TCF7_TCF7L1,2:0.336407519385;FOX{I1,J2}:0.326076007889;CRX:0.258621904743;ATF4:0.23442452449;SOX2:0.228377576504;FOXO1,3,4:0.179591588966;HOX{A4,D4}:0.149349840047;EVI1:0.129076202409;SNAI1..3:0.127518314442;FOXN1:0.0854763608885;SOX17:0.0663298289384;NANOG{mouse}:0.00426581581702;PAX4:-0.0149979466514;TEF:-0.0365804229197;POU1F1:-0.0410254419185;HBP1_HMGB_SSRP1_UBTF:-0.0485866971804;AR:-0.0493736817005;HAND1,2:-0.0636119504506;PAX2:-0.0636784327236;FOXP3:-0.0774580196419;bHLH_family:-0.0985909749363;PDX1:-0.0997742305186;ZEB1:-0.114307291233;RFX2..5_RFXANK_RFXAP:-0.127509554155;RFX1:-0.141424550822;IRF1,2:-0.167878751993;FOXM1:-0.169135184478;AHR_ARNT_ARNT2:-0.171357870581;FOXQ1:-0.179832882188;OCT4_SOX2{dimer}:-0.182209234927;HNF1A:-0.184208610099;NFE2L1:-0.197233467866;NFKB1_REL_RELA:-0.211964390707;PRRX1,2:-0.219223944928;MYOD1:-0.226151359738;LHX3,4:-0.243813184806;ONECUT1,2:-0.25418502432;MYBL2:-0.271789378504;HOX{A5,B5}:-0.276623481914;NKX3-1:-0.283861922887;STAT5{A,B}:-0.301033341527;HNF4A_NR2F1,2:-0.305008540471;SOX5:-0.313243551266;DBP:-0.377409694816;UFEwm:-0.409588659574;ZFP161:-0.421858417453;NFIL3:-0.495405065505;FOX{D1,D2}:-0.495512631827;ADNP_IRX_SIX_ZHX:-0.501425371471;PAX1,9:-0.511142304042;MYFfamily:-0.523068076141;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.531884368867;NR6A1:-0.539020087781;MEF2{A,B,C,D}:-0.546426273635;SREBF1,2:-0.550550901398;RXR{A,B,G}:-0.576129092459;EP300:-0.606661861526;HMGA1,2:-0.638388753381;MED-1{core}:-0.646255553091;NKX2-3_NKX2-5:-0.660705327659;GATA4:-0.661943487969;SMAD1..7,9:-0.670722684684;NFE2:-0.693036389901;POU5F1:-0.719164267061;IRF7:-0.722590081269;FOSL2:-0.732863379921;ESRRA:-0.734552655233;HLF:-0.744115453719;EGR1..3:-0.788093117908;REST:-0.794102375121;NR1H4:-0.79495706195;NR3C1:-0.802459376582;NFIX:-0.846684233331;HSF1,2:-0.860935588826;KLF4:-0.864479979384;ZIC1..3:-0.871448817212;MZF1:-0.873344802345;FOS_FOS{B,L1}_JUN{B,D}:-0.876491604219;JUN:-0.879618519313;ATF6:-0.887372617057;BACH2:-0.924330051572;CEBPA,B_DDIT3:-0.935890489876;PAX5:-0.938085142882;TAL1_TCF{3,4,12}:-0.93868801851;ZNF238:-0.949344854555;SRF:-0.951733500152;GZF1:-0.972176948473;ZNF148:-0.976997101206;ZNF423:-0.977194367573;GTF2A1,2:-0.98317730598;CDC5L:-1.01864391125;ESR1:-1.02341866409;NKX3-2:-1.04238429261;IKZF1:-1.05263516397;TFAP4:-1.05482209765;GCM1,2:-1.07259504298;RXRA_VDR{dimer}:-1.10993309761;NHLH1,2:-1.11080299096;TBP:-1.11360269372;NFATC1..3:-1.12869599354;FOXL1:-1.19458835092;ATF2:-1.20445173452;MTE{core}:-1.22880943443;RREB1:-1.25222780379;GTF2I:-1.26305419332;PPARG:-1.27029437549;ZBTB6:-1.272548142;ALX4:-1.29193360661;XBP1:-1.2963847739;TEAD1:-1.30593477435;STAT2,4,6:-1.35423038421;HIC1:-1.36842067775;HIF1A:-1.39062917823;TP53:-1.41763635239;PATZ1:-1.42065618006;GFI1B:-1.43954596434;HMX1:-1.4424231242;EBF1:-1.45909584047;MAZ:-1.53683546051;NFE2L2:-1.59501470745;XCPE1{core}:-1.6881050482;PRDM1:-1.7290627492;MTF1:-1.81494597966;MAFB:-1.83379301672;TFAP2B:-1.8518417577;TLX1..3_NFIC{dimer}:-1.92564422515;SP1:-2.16722162555;GLI1..3:-2.2580396237;TBX4,5:-2.6523108349;TFAP2{A,C}:-2.67877605442;TFCP2:-2.80608577912 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10435-106E3;search_select_hide=table117:FF:10435-106E3 | |||
}} | }} |
Latest revision as of 14:01, 3 June 2020
Name: | Hodgkin's lymphoma cell line:HD-Mar2 |
---|---|
Species: | Human (Homo sapiens) |
Library ID: | CNhs11715 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Download raw sequence, BAM & CTSS | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11715
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11715
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.214 |
10 | 10 | 0.0442 |
100 | 100 | 0.289 |
101 | 101 | 0.337 |
102 | 102 | 0.526 |
103 | 103 | 0.626 |
104 | 104 | 0.673 |
105 | 105 | 0.667 |
106 | 106 | 0.0711 |
107 | 107 | 0.029 |
108 | 108 | 0.22 |
109 | 109 | 0.545 |
11 | 11 | 0.431 |
110 | 110 | 0.839 |
111 | 111 | 0.33 |
112 | 112 | 0.372 |
113 | 113 | 0.54 |
114 | 114 | 0.465 |
115 | 115 | 0.881 |
116 | 116 | 0.688 |
117 | 117 | 0.0578 |
118 | 118 | 0.91 |
119 | 119 | 0.352 |
12 | 12 | 0.542 |
120 | 120 | 0.841 |
121 | 121 | 0.811 |
122 | 122 | 0.848 |
123 | 123 | 0.00206 |
124 | 124 | 0.0558 |
125 | 125 | 0.255 |
126 | 126 | 0.855 |
127 | 127 | 0.492 |
128 | 128 | 0.037 |
129 | 129 | 0.775 |
13 | 13 | 0.246 |
130 | 130 | 0.159 |
131 | 131 | 0.887 |
132 | 132 | 0.51 |
133 | 133 | 0.589 |
134 | 134 | 0.369 |
135 | 135 | 0.42 |
136 | 136 | 0.587 |
137 | 137 | 0.632 |
138 | 138 | 0.854 |
139 | 139 | 0.686 |
14 | 14 | 0.894 |
140 | 140 | 0.719 |
141 | 141 | 0.61 |
142 | 142 | 0.863 |
143 | 143 | 0.135 |
144 | 144 | 0.907 |
145 | 145 | 0.766 |
146 | 146 | 0.628 |
147 | 147 | 0.147 |
148 | 148 | 0.827 |
149 | 149 | 0.0579 |
15 | 15 | 0.516 |
150 | 150 | 0.993 |
151 | 151 | 0.399 |
152 | 152 | 0.00738 |
153 | 153 | 0.841 |
154 | 154 | 1 |
155 | 155 | 0.152 |
156 | 156 | 0.695 |
157 | 157 | 0.173 |
158 | 158 | 0.821 |
159 | 159 | 0.123 |
16 | 16 | 0.359 |
160 | 160 | 0.848 |
161 | 161 | 0.32 |
162 | 162 | 0.644 |
163 | 163 | 0.315 |
164 | 164 | 0.682 |
165 | 165 | 0.899 |
166 | 166 | 0.439 |
167 | 167 | 0.0508 |
168 | 168 | 0.0922 |
169 | 169 | 0.0949 |
17 | 17 | 0.243 |
18 | 18 | 0.44 |
19 | 19 | 0.0831 |
2 | 2 | 0.187 |
20 | 20 | 0.476 |
21 | 21 | 0.256 |
22 | 22 | 0.219 |
23 | 23 | 0.00843 |
24 | 24 | 0.954 |
25 | 25 | 0.205 |
26 | 26 | 0.242 |
27 | 27 | 0.894 |
28 | 28 | 0.558 |
29 | 29 | 0.0772 |
3 | 3 | 0.608 |
30 | 30 | 0.0825 |
31 | 31 | 0.378 |
32 | 32 | 0.0396 |
33 | 33 | 0.977 |
34 | 34 | 0.188 |
35 | 35 | 0.0942 |
36 | 36 | 0.0829 |
37 | 37 | 0.864 |
38 | 38 | 0.99 |
39 | 39 | 0.0723 |
4 | 4 | 0.122 |
40 | 40 | 0.895 |
41 | 41 | 0.555 |
42 | 42 | 0.193 |
43 | 43 | 0.741 |
44 | 44 | 0.547 |
45 | 45 | 0.173 |
46 | 46 | 0.442 |
47 | 47 | 0.071 |
48 | 48 | 0.509 |
49 | 49 | 0.468 |
5 | 5 | 0.837 |
50 | 50 | 0.502 |
51 | 51 | 0.599 |
52 | 52 | 0.0199 |
53 | 53 | 0.65 |
54 | 54 | 0.345 |
55 | 55 | 0.269 |
56 | 56 | 0.79 |
57 | 57 | 0.58 |
58 | 58 | 0.627 |
59 | 59 | 0.23 |
6 | 6 | 0.485 |
60 | 60 | 0.16 |
61 | 61 | 0.27 |
62 | 62 | 0.742 |
63 | 63 | 0.987 |
64 | 64 | 0.636 |
65 | 65 | 0.471 |
66 | 66 | 0.0218 |
67 | 67 | 0.619 |
68 | 68 | 0.209 |
69 | 69 | 0.747 |
7 | 7 | 0.35 |
70 | 70 | 0.655 |
71 | 71 | 0.173 |
72 | 72 | 0.826 |
73 | 73 | 0.057 |
74 | 74 | 0.32 |
75 | 75 | 0.135 |
76 | 76 | 0.634 |
77 | 77 | 0.0359 |
78 | 78 | 0.538 |
79 | 79 | 0.0324 |
8 | 8 | 0.854 |
80 | 80 | 0.515 |
81 | 81 | 0.704 |
82 | 82 | 0.711 |
83 | 83 | 0.77 |
84 | 84 | 0.711 |
85 | 85 | 0.026 |
86 | 86 | 0.621 |
87 | 87 | 0.397 |
88 | 88 | 0.786 |
89 | 89 | 0.0422 |
9 | 9 | 0.434 |
90 | 90 | 0.395 |
91 | 91 | 0.551 |
92 | 92 | 0.19 |
93 | 93 | 0.881 |
94 | 94 | 0.287 |
95 | 95 | 0.512 |
96 | 96 | 0.377 |
97 | 97 | 0.219 |
98 | 98 | 0.986 |
99 | 99 | 0.167 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11715
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104973 Hodgkin lymphoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000219 (motile cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
0060058 (lymphoma)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100104 (lymphoma cell line sample)
0104973 (Hodgkin lymphoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)