FF:10816-111B6: Difference between revisions

Latest revision as of 15:06, 3 June 2020

Name:	epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2
Species:	Human (Homo sapiens)
Library ID:	CNhs12326
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cervix
dev stage	NA
sex	female
age	NA
cell type	epithelial cell
cell line	HelaS3
company	NA
collaboration	Carrie Davis (Cold spring Harbor Laboratories)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005737

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12326		CAGE		DRX007883		DRR008755

Accession ID Hg19

Library id		BAM		CTSS
CNhs12326		DRZ000180		DRZ001565

Accession ID Hg38

Library id		BAM		CTSS
CNhs12326		DRZ011530		DRZ012915

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0593
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.351
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.66
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0.681
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.00756
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.11
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.0306
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.098
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0796
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.0593
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0593
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.689
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.00215
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0306
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00368
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0252
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.573
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0.0593
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12326

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00359
MA0003.1	MA0003.1	0.198
MA0004.1	MA0004.1	0.234
MA0006.1	MA0006.1	0.69
MA0007.1	MA0007.1	0.516
MA0009.1	MA0009.1	0.239
MA0014.1	MA0014.1	0.988
MA0017.1	MA0017.1	0.924
MA0018.2	MA0018.2	0.125
MA0019.1	MA0019.1	0.604
MA0024.1	MA0024.1	1.71968e-7
MA0025.1	MA0025.1	0.347
MA0027.1	MA0027.1	0.775
MA0028.1	MA0028.1	1.48236e-7
MA0029.1	MA0029.1	0.00782
MA0030.1	MA0030.1	0.0553
MA0031.1	MA0031.1	0.1
MA0035.2	MA0035.2	0.00664
MA0038.1	MA0038.1	0.0475
MA0039.2	MA0039.2	0.0355
MA0040.1	MA0040.1	0.594
MA0041.1	MA0041.1	0.834
MA0042.1	MA0042.1	0.982
MA0043.1	MA0043.1	0.202
MA0046.1	MA0046.1	0.402
MA0047.2	MA0047.2	0.571
MA0048.1	MA0048.1	0.00436
MA0050.1	MA0050.1	0.179
MA0051.1	MA0051.1	0.667
MA0052.1	MA0052.1	0.00416
MA0055.1	MA0055.1	5.09693e-4
MA0057.1	MA0057.1	0.884
MA0058.1	MA0058.1	0.0896
MA0059.1	MA0059.1	0.224
MA0060.1	MA0060.1	2.44512e-16
MA0061.1	MA0061.1	0.0247
MA0062.2	MA0062.2	4.61386e-6
MA0065.2	MA0065.2	0.175
MA0066.1	MA0066.1	0.176
MA0067.1	MA0067.1	0.506
MA0068.1	MA0068.1	0.342
MA0069.1	MA0069.1	0.833
MA0070.1	MA0070.1	0.0694
MA0071.1	MA0071.1	0.399
MA0072.1	MA0072.1	0.117
MA0073.1	MA0073.1	0.299
MA0074.1	MA0074.1	0.86
MA0076.1	MA0076.1	5.60663e-7
MA0077.1	MA0077.1	0.994
MA0078.1	MA0078.1	0.172
MA0079.2	MA0079.2	0.805
MA0080.2	MA0080.2	2.27289e-7
MA0081.1	MA0081.1	0.413
MA0083.1	MA0083.1	0.013
MA0084.1	MA0084.1	0.806
MA0087.1	MA0087.1	0.818
MA0088.1	MA0088.1	0.0121
MA0090.1	MA0090.1	0.363
MA0091.1	MA0091.1	0.0214
MA0092.1	MA0092.1	0.266
MA0093.1	MA0093.1	0.154
MA0099.2	MA0099.2	0.139
MA0100.1	MA0100.1	0.314
MA0101.1	MA0101.1	0.452
MA0102.2	MA0102.2	0.0948
MA0103.1	MA0103.1	0.468
MA0104.2	MA0104.2	0.00846
MA0105.1	MA0105.1	0.064
MA0106.1	MA0106.1	0.566
MA0107.1	MA0107.1	0.157
MA0108.2	MA0108.2	0.935
MA0111.1	MA0111.1	0.832
MA0112.2	MA0112.2	0.245
MA0113.1	MA0113.1	0.592
MA0114.1	MA0114.1	0.156
MA0115.1	MA0115.1	0.0105
MA0116.1	MA0116.1	0.589
MA0117.1	MA0117.1	0.673
MA0119.1	MA0119.1	0.731
MA0122.1	MA0122.1	0.345
MA0124.1	MA0124.1	0.889
MA0125.1	MA0125.1	0.344
MA0131.1	MA0131.1	0.0475
MA0135.1	MA0135.1	0.339
MA0136.1	MA0136.1	0.0293
MA0137.2	MA0137.2	0.624
MA0138.2	MA0138.2	0.0107
MA0139.1	MA0139.1	0.77
MA0140.1	MA0140.1	9.02818e-4
MA0141.1	MA0141.1	0.289
MA0142.1	MA0142.1	0.992
MA0143.1	MA0143.1	0.0973
MA0144.1	MA0144.1	0.542
MA0145.1	MA0145.1	0.475
MA0146.1	MA0146.1	0.351
MA0147.1	MA0147.1	0.0135
MA0148.1	MA0148.1	0.448
MA0149.1	MA0149.1	0.0649
MA0150.1	MA0150.1	0.585
MA0152.1	MA0152.1	0.523
MA0153.1	MA0153.1	0.736
MA0154.1	MA0154.1	0.0495
MA0155.1	MA0155.1	0.023
MA0156.1	MA0156.1	0.44
MA0157.1	MA0157.1	0.342
MA0159.1	MA0159.1	0.819
MA0160.1	MA0160.1	0.236
MA0162.1	MA0162.1	0.299
MA0163.1	MA0163.1	0.645
MA0164.1	MA0164.1	0.737
MA0258.1	MA0258.1	0.349
MA0259.1	MA0259.1	0.124

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12326

Novel motif	Logo	P-value
1	1	0.561
10	10	0.127
100	100	0.176
101	101	0.805
102	102	0.861
103	103	0.0388
104	104	0.969
105	105	0.329
106	106	0.00529
107	107	0.0332
108	108	0.222
109	109	0.207
11	11	0.423
110	110	0.6
111	111	0.688
112	112	0.00119
113	113	0.0166
114	114	0.511
115	115	0.519
116	116	0.916
117	117	0.156
118	118	0.649
119	119	0.466
12	12	0.96
120	120	0.741
121	121	0.526
122	122	0.505
123	123	0.598
124	124	0.494
125	125	0.349
126	126	0.805
127	127	0.87
128	128	0.00257
129	129	0.373
13	13	0.001
130	130	0.0217
131	131	0.0958
132	132	0.745
133	133	0.305
134	134	0.282
135	135	0.057
136	136	0.0358
137	137	0.189
138	138	0.544
139	139	0.221
14	14	0.386
140	140	0.714
141	141	0.456
142	142	0.389
143	143	0.6
144	144	0.489
145	145	0.21
146	146	0.518
147	147	0.48
148	148	0.711
149	149	0.0298
15	15	0.56
150	150	0.877
151	151	0.649
152	152	0.0594
153	153	0.284
154	154	0.726
155	155	0.976
156	156	0.565
157	157	0.382
158	158	0.188
159	159	0.337
16	16	0.458
160	160	0.418
161	161	0.481
162	162	0.6
163	163	0.763
164	164	0.947
165	165	0.611
166	166	0.254
167	167	0.271
168	168	0.547
169	169	0.464
17	17	0.369
18	18	0.161
19	19	0.179
2	2	0.0976
20	20	0.0367
21	21	0.802
22	22	0.475
23	23	7.2037e-4
24	24	0.51
25	25	0.795
26	26	0.962
27	27	0.127
28	28	0.549
29	29	0.115
3	3	0.494
30	30	0.133
31	31	0.238
32	32	0.0364
33	33	0.491
34	34	0.146
35	35	0.575
36	36	0.277
37	37	0.942
38	38	0.976
39	39	0.636
4	4	0.39
40	40	0.283
41	41	0.237
42	42	0.862
43	43	0.334
44	44	0.73
45	45	0.297
46	46	0.313
47	47	0.91
48	48	0.972
49	49	0.653
5	5	0.339
50	50	0.918
51	51	0.242
52	52	0.143
53	53	0.361
54	54	0.398
55	55	0.0178
56	56	0.458
57	57	0.938
58	58	0.776
59	59	0.232
6	6	0.905
60	60	0.126
61	61	0.211
62	62	0.387
63	63	0.981
64	64	0.811
65	65	0.065
66	66	2.29854e-6
67	67	0.763
68	68	0.696
69	69	0.425
7	7	0.288
70	70	0.0591
71	71	0.376
72	72	0.484
73	73	0.399
74	74	0.557
75	75	0.16
76	76	0.366
77	77	0.349
78	78	0.485
79	79	0.329
8	8	0.833
80	80	0.0901
81	81	0.454
82	82	0.00758
83	83	0.473
84	84	0.427
85	85	0.0155
86	86	0.857
87	87	0.0743
88	88	0.704
89	89	0.0366
9	9	0.228
90	90	0.0552
91	91	0.0108
92	92	0.0319
93	93	0.896
94	94	0.156
95	95	0.219
96	96	0.143
97	97	0.691
98	98	0.953
99	99	0.931

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12326

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011472 human epitheloid carcinoma cell line: HelaS3 ENCODE sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011472 (human epitheloid carcinoma cell line: HelaS3 ENCODE sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007778
+|DRA_sample_Accession=CAGE@SAMD00005737
+|accession_numbers=CAGE;DRX007883;DRR008755;DRZ000180;DRZ001565;DRZ011530;DRZ012915
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr6:10415484..10415508,-!p3@TFAP2A!1.89!76.38!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.68!75.65!FOXQ1;;chr6:10415276..10415341,-!p2@TFAP2A!1.67!55.11!TFAP2A;;chr6:10412600..10412637,-!p1@TFAP2A!1.60!63.30!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.56!358.21!KLF5;;chr18:55102628..55102646,+!p2@ONECUT2!1.49!30.11!ONECUT2;;chr5:134369905..134369972,-!p1@PITX1!1.48!43.85!PITX1;;chr12:85673868..85673881,+!p2@ALX1!1.48!29.24!ALX1;;chr5:134369879..134369898,-!p2@PITX1!1.47!28.58!PITX1;;chr3:12330560..12330579,+!p1@PPARG!1.44!30.62!PPARG;;chr6:126240380..126240430,+!p2@NCOA7!1.43!65.49!NCOA7;;chr18:55102598..55102623,+!p1@ONECUT2!1.43!25.95!ONECUT2;;chr20:55204351..55204377,+!p1@TFAP2C!1.32!25.14!TFAP2C;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.32!20.03!SEBOX;;chr6:126240442..126240459,+!p4@NCOA7!1.31!24.63!NCOA7;;chr6:10412392..10412409,-!p4@TFAP2A!1.30!21.42!TFAP2A;;chr3:128207349..128207386,-!p3@GATA2!1.30!18.78!GATA2;;chr1:201979703..201979721,+!p2@ELF3!1.29!18.49!ELF3;;chr8:128748308..128748324,+!p2@MYC!1.28!489.19!MYC;;chr10:35484053..35484076,+!p1@CREM!1.28!44.88!CREM;;chr17:8027418..8027432,-!p1@HES7!1.28!18.20!HES7;;chr12:85673977..85674015,+!p1@ALX1!1.27!17.83!ALX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.26!17.25!MLXIPL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.26!17.10!ZBED1;;chr6:1389789..1389821,+!p1@FOXF2!1.25!22.80!FOXF2;;chr12:54378923..54378966,+!p1@HOXC10!1.25!16.74!HOXC10;;chr1:201979743..201979762,+!p1@ELF3!1.25!16.66!ELF3;;chr3:128206762..128206781,-!p2@GATA2!1.23!96.77!GATA2;;chr2:45236540..45236577,-!p1@SIX2!1.21!15.35!SIX2;;chr1:23857698..23857733,-!p1@E2F2!1.17!25.44!E2F2;;chr17:46687959..46688007,-!p2@HOXB7!1.16!18.78!HOXB7;;chrX:131624056..131624069,-!p2@MBNL3!1.16!18.35!MBNL3;;chr5:170736243..170736279,+!p1@TLX3!1.15!13.23!TLX3;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.11!11.84!SEBOX;;chr11:31832658..31832681,-!p1@PAX6!1.09!11.18!PAX6;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.94!MECOM;;chr17:46682321..46682362,-!p1@HOXB6!1.08!11.04!HOXB6;;chr6:126240463..126240489,+!p6@NCOA7!1.07!12.06!NCOA7;;chr12:54366975..54367001,+!p1@HOXC11!1.07!10.82!HOXC11;;chr15:96875657..96875760,+!p14@NR2F2!1.05!17.03!NR2F2;;chr9:126774018..126774055,+!p1@LHX2!1.05!10.23!LHX2;;chr12:54366894..54366922,+!p2@HOXC11!1.03!9.65!HOXC11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.03!9.65!HOXC5;;chr7:27196267..27196311,-!p1@HOXA7!1.03!9.65!HOXA7;;chr12:85674018..85674039,+!p3@ALX1!1.02!9.57!ALX1;;chr2:46524897..46524911,+!p2@EPAS1!1.01!26.02!EPAS1;;chr6:10412576..10412599,-!p5@TFAP2A!1.01!9.21!TFAP2A;;chr17:41277372..41277418,-!p1@BRCA1!0.99!32.38!BRCA1;;chr6:126240356..126240379,+!p7@NCOA7!0.98!10.67!NCOA7;;chr12:2986275..2986363,-!p1@FOXM1!0.97!86.54!FOXM1;;chr1:23857325..23857416,-!p2@E2F2!0.97!9.72!E2F2;;chr12:54366949..54366973,+!p3@HOXC11!0.97!8.26!HOXC11;;chr12:115121962..115121987,-!p1@TBX3!0.96!70.90!TBX3;;chrX:131623044..131623089,-!p1@MBNL3!0.96!34.94!MBNL3;;chr12:54332608..54332636,+!p1@HOXC13!0.96!8.19!HOXC13;;chr6:1389989..1390019,+!p2@FOXF2!0.96!8.04!FOXF2;;chr17:46688334..46688385,-!p1@HOXB7!0.95!11.48!HOXB7;;chr3:114790132..114790174,-!p18@ZBTB20!0.95!7.97!ZBTB20;;chr12:54380404..54380433,+!p3@HOXC10!0.95!7.82!HOXC10;;chr20:6748325..6748352,+!p1@BMP2!0.94!11.40!BMP2;;chr8:10588010..10588030,-!p1@SOX7!0.93!7.53!SOX7;;chr17:46687935..46687950,-!p3@HOXB7!0.92!7.38!HOXB7;;chr12:54332652..54332671,+!p2@HOXC13!0.92!7.24!HOXC13;;chr6:126102254..126102289,+!p5@NCOA7!0.91!20.61!NCOA7;;chr20:32274150..32274166,-!p2@E2F1!0.91!13.52!E2F1;;chr1:151804244..151804310,-!p1@RORC!0.91!7.16!RORC;;chr6:20402102..20402152,+!p1@E2F3!0.90!30.04!E2F3;;chr9:99180617..99180658,-!p1@ZNF367!0.90!15.86!ZNF367;;chr3:32023232..32023273,+!p1@ZNF860!0.89!9.87!ZNF860;;chrX:131622958..131622978,-!p3@MBNL3!0.89!8.62!MBNL3;;chr12:80084737..80084763,-!p3@PAWR!0.88!26.09!PAWR;;chr15:66994615..66994630,+!p3@SMAD6!0.88!9.72!SMAD6;;chr12:54393880..54393962,+!p1@HOXC9!0.88!6.65!HOXC9;;chr3:69915385..69915438,+!p3@MITF!0.88!6.58!MITF;;chr20:32274179..32274213,-!p1@E2F1!0.87!45.53!E2F1;;chr6:126102292..126102329,+!p3@NCOA7!0.87!22.15!NCOA7;;chr5:92918919..92918942,+!p1@NR2F1!0.85!28.87!NR2F1;;chr6:10412477..10412490,-!p10@TFAP2A!0.84!5.99!TFAP2A;;chr1:23885981..23886002,-!p1@ID3!0.83!1085.74!ID3;;chr12:52445218..52445237,+!p1@NR4A1!0.83!78.64!NR4A1;;chr20:42295713..42295738,+!p2@MYBL2!0.83!36.03!MYBL2;;chr8:128747661..128747703,+!p6@MYC!0.81!7.53!MYC;;chr8:55370487..55370503,+!p1@SOX17!0.81!5.41!SOX17;;chr21:38071430..38071456,+!p1@SIM2!0.81!5.41!SIM2;;chr15:66994663..66994680,+!p1@SMAD6!0.79!13.08!SMAD6;;chr20:42295745..42295765,+!p1@MYBL2!0.78!90.41!MYBL2;;chr6:10415263..10415274,-!p8@TFAP2A!0.78!4.97!TFAP2A;;chr5:170736216..170736238,+!p2@TLX3!0.77!4.90!TLX3;;chrX:131623026..131623039,-!p5@MBNL3!0.77!4.90!MBNL3;;chr12:54379136..54379150,+!p4@HOXC5!0.77!4.82!HOXC5;;chr8:128747757..128747800,+!p7@MYC!0.76!6.72!MYC;;chr9:102584262..102584276,+!p1@NR4A3!0.75!11.18!NR4A3;;chr5:76383133..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@@ Line 38: / Line 40: @@
 |fonse_treatment_closure=
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 |id=FF:10816-111B6
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 |name=epitheloid carcinoma cell line: HelaS3 ENCODE, biol_rep2
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@@ Line 47: / Line 59: @@
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS007778
-|accession_numbers=DRX007883;DRR008755;DRZ000180;DRZ001565;CAGE
-|library_id=CNhs12326
 }}

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Latest revision as of 15:06, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0