FF:10453-106G3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005000 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |accession_numbers=CAGE;DRX007865;DRR008737;DRZ000162;DRZ001547;DRZ011512;DRZ012897 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000178,UBERON:0002331,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000179,UBERON:0000463,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000478,UBERON:0010317,UBERON:0002390,UBERON:0004535,UBERON:0002193,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002371,CL:0000255,CL:0000080 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0000625,FF:0101035,FF:0104053 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101035 | |fonse_cell_line=FF:0101035 | ||
|fonse_cell_line_closure=FF:0101035 | |fonse_cell_line_closure=FF:0101035 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure=FF:0000625,FF:10453-106G3 | |fonse_treatment_closure=FF:0000625,FF:10453-106G3 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/cord%2520blood%2520derived%2520cell%2520line%253aCOBL-a%252024h%2520infection.CNhs11050.10453-106G3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10453-106G3 | |id=FF:10453-106G3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0000625;;FF:0104053 | ||
|is_obsolete= | |||
|library_id=CNhs11050 | |||
|library_id_phase_based=2:CNhs11050 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10453 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10453 | |||
|name=cord blood derived cell line:COBL-a 24h infection | |name=cord blood derived cell line:COBL-a 24h infection | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11050,LSID722,release008,COMPLETED | |profile_hcage=CNhs11050,LSID722,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0252988959839468,0,0,0,0,0.212447342169182,0.0505977919678937,-0.214933471521983,-0.282403560576942,0,0,0,0.117019167951368,0,0,0,0,0,0,0.324709428614881,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.174424937385953,0,-0.113001711684961,0,0,0,0,0,0,0,0,0.062997447580142,0,0,0.416029603982305,0,0,-0.0474364374565724,0,-0.0969923612426051,0,0,-0.0014326398004038,0,0,0,0,0,0,0,0,0.0505977919678937,0,0.0505977919678937,0,0,0.0959109874126932,0,0,0,0.0505977919678937,0.0479554937063466,0,0.122789128261995,0,0,0,-0.179806277012205,0.460656624420605,0,0,0.128810840951147,0.334501178761011,0,0,0.0252988959839468,0,0.0389044687660449,-0.138477200800895,0,0,0,0.372765372255568,0,0,0.0959109874126932,0,0,0,0,0,0,0,0,0,0,-0.0279036839205853,0.136939820003751,0,0,-0.116130787210324,-0.149000163639602,0.0959109874126932,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=22.65275 | |rna_weight_ug=22.65275 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line=COBL-a | |sample_cell_line=COBL-a | ||
| Line 69: | Line 90: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.30031122039785e-270!GO:0043227;membrane-bound organelle;4.31010376396649e-238!GO:0043231;intracellular membrane-bound organelle;1.83170305526691e-237!GO:0043226;organelle;3.74963547277741e-234!GO:0043229;intracellular organelle;2.20845064737193e-233!GO:0044422;organelle part;2.36010425588446e-164!GO:0005737;cytoplasm;1.80261022424715e-163!GO:0044446;intracellular organelle part;4.85647135810909e-162!GO:0032991;macromolecular complex;1.51782165915454e-129!GO:0005634;nucleus;4.96489206809453e-123!GO:0044444;cytoplasmic part;1.45514952988727e-113!GO:0044237;cellular metabolic process;1.36723370853032e-111!GO:0044238;primary metabolic process;9.59441548807639e-109!GO:0043170;macromolecule metabolic process;1.97854523817246e-105!GO:0030529;ribonucleoprotein complex;4.76859654108567e-105!GO:0044428;nuclear part;5.93047446429924e-100!GO:0003723;RNA binding;7.15019340599093e-95!GO:0043233;organelle lumen;1.00891039687342e-94!GO:0031974;membrane-enclosed lumen;1.00891039687342e-94!GO:0005515;protein binding;3.72751970279717e-73!GO:0043283;biopolymer metabolic process;1.28294528127951e-72!GO:0005739;mitochondrion;2.64276719593945e-71!GO:0006396;RNA processing;9.03693252709986e-69!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.4646687742033e-67!GO:0043234;protein complex;5.67759379116902e-67!GO:0010467;gene expression;9.65510622860755e-67!GO:0006412;translation;1.21562138137503e-65!GO:0031981;nuclear lumen;3.78127836626844e-60!GO:0005840;ribosome;1.57287000968399e-56!GO:0016071;mRNA metabolic process;4.35809130180266e-53!GO:0003676;nucleic acid binding;4.00941689042336e-50!GO:0006259;DNA metabolic process;1.61485464851535e-49!GO:0003735;structural constituent of ribosome;3.62745246078736e-49!GO:0044249;cellular biosynthetic process;1.2877022681236e-48!GO:0019538;protein metabolic process;6.55213991284471e-48!GO:0044429;mitochondrial part;9.18799382633187e-48!GO:0009058;biosynthetic process;1.21294810913252e-46!GO:0008380;RNA splicing;3.37625853291604e-46!GO:0009059;macromolecule biosynthetic process;4.42402109240571e-46!GO:0016043;cellular component organization and biogenesis;2.25691815839551e-45!GO:0031090;organelle membrane;2.87069952448492e-45!GO:0006397;mRNA processing;4.14241342464371e-45!GO:0031967;organelle envelope;5.04072038348131e-45!GO:0031975;envelope;8.89518172503786e-45!GO:0044267;cellular protein metabolic process;1.35629737682404e-43!GO:0033279;ribosomal subunit;2.35098894388512e-43!GO:0006996;organelle organization and biogenesis;6.85749680657686e-43!GO:0044260;cellular macromolecule metabolic process;1.65526427219466e-42!GO:0033036;macromolecule localization;3.2984892741635e-42!GO:0015031;protein transport;9.36386445453412e-41!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.50518760572943e-39!GO:0046907;intracellular transport;5.32387535546189e-38!GO:0043228;non-membrane-bound organelle;1.01464410056555e-37!GO:0043232;intracellular non-membrane-bound organelle;1.01464410056555e-37!GO:0045184;establishment of protein localization;1.14907293266392e-37!GO:0005654;nucleoplasm;1.40870404976629e-37!GO:0008104;protein localization;2.47266366679098e-37!GO:0005829;cytosol;2.21674858079749e-36!GO:0007049;cell cycle;8.81346232927554e-36!GO:0016070;RNA metabolic process;2.45679111711193e-35!GO:0000166;nucleotide binding;2.8519616980823e-34!GO:0065003;macromolecular complex assembly;1.15649378920758e-33!GO:0005681;spliceosome;1.35378570747342e-33!GO:0006974;response to DNA damage stimulus;5.98212530834518e-31!GO:0006886;intracellular protein transport;2.22574803605511e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.54198794581818e-30!GO:0022402;cell cycle process;2.66062019090737e-29!GO:0019866;organelle inner membrane;7.40781145392224e-29!GO:0022607;cellular component assembly;1.57241982165544e-28!GO:0044451;nucleoplasm part;4.95334624448534e-28!GO:0005740;mitochondrial envelope;8.62851988490241e-28!GO:0006281;DNA repair;1.63070256807879e-27!GO:0000278;mitotic cell cycle;6.96349633808107e-27!GO:0051649;establishment of cellular localization;6.97661586327409e-27!GO:0051641;cellular localization;9.4780520267721e-27!GO:0005694;chromosome;2.39304149199788e-26!GO:0005743;mitochondrial inner membrane;4.37694468488124e-26!GO:0031966;mitochondrial membrane;5.84256642647637e-26!GO:0044445;cytosolic part;9.81759462777931e-26!GO:0031980;mitochondrial lumen;1.98633184158248e-24!GO:0005759;mitochondrial matrix;1.98633184158248e-24!GO:0032553;ribonucleotide binding;9.75928742755101e-24!GO:0032555;purine ribonucleotide binding;9.75928742755101e-24!GO:0005730;nucleolus;9.82732262079418e-24!GO:0017111;nucleoside-triphosphatase activity;1.00056357430343e-23!GO:0044427;chromosomal part;1.77262949409842e-23!GO:0017076;purine nucleotide binding;3.52328776519821e-23!GO:0016462;pyrophosphatase activity;3.86366056777052e-23!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.86726919823601e-23!GO:0015935;small ribosomal subunit;4.86726919823601e-23!GO:0016817;hydrolase activity, acting on acid anhydrides;6.86737267830474e-23!GO:0005524;ATP binding;1.0364372174418e-21!GO:0006119;oxidative phosphorylation;1.18295893115402e-21!GO:0016874;ligase activity;1.48347669730457e-21!GO:0000087;M phase of mitotic cell cycle;1.56564887815901e-21!GO:0022403;cell cycle phase;2.60394750006e-21!GO:0032559;adenyl ribonucleotide binding;2.62125657993214e-21!GO:0015934;large ribosomal subunit;2.69180831618165e-21!GO:0051276;chromosome organization and biogenesis;3.61137791649334e-21!GO:0012505;endomembrane system;4.15578741458317e-21!GO:0007067;mitosis;5.43596243281518e-21!GO:0044455;mitochondrial membrane part;8.98437910262356e-21!GO:0022618;protein-RNA complex assembly;1.31946033056051e-20!GO:0030554;adenyl nucleotide binding;1.58771083393757e-20!GO:0009719;response to endogenous stimulus;2.67280374179415e-20!GO:0006457;protein folding;3.79436075461687e-20!GO:0006512;ubiquitin cycle;1.5518124078893e-19!GO:0006260;DNA replication;2.00690777824831e-19!GO:0042254;ribosome biogenesis and assembly;4.2026245390852e-19!GO:0044265;cellular macromolecule catabolic process;1.33402589109972e-18!GO:0000279;M phase;1.9825087485765e-18!GO:0008134;transcription factor binding;2.64782652401443e-18!GO:0042623;ATPase activity, coupled;2.70046053082779e-18!GO:0005635;nuclear envelope;2.77557438792743e-18!GO:0008135;translation factor activity, nucleic acid binding;3.12196056030467e-18!GO:0000502;proteasome complex (sensu Eukaryota);8.85298091242861e-18!GO:0016887;ATPase activity;1.02029299553995e-17!GO:0051301;cell division;1.06063397713682e-17!GO:0006366;transcription from RNA polymerase II promoter;1.17371685761253e-17!GO:0005761;mitochondrial ribosome;2.3600491077481e-17!GO:0000313;organellar ribosome;2.3600491077481e-17!GO:0019941;modification-dependent protein catabolic process;4.16704070268855e-17!GO:0043632;modification-dependent macromolecule catabolic process;4.16704070268855e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;4.67927014056261e-17!GO:0012501;programmed cell death;9.47368886911923e-17!GO:0006511;ubiquitin-dependent protein catabolic process;9.79495532469353e-17!GO:0006915;apoptosis;1.00723756297156e-16!GO:0044257;cellular protein catabolic process;1.50740322602502e-16!GO:0044453;nuclear membrane part;1.50740322602502e-16!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.55334670201716e-16!GO:0006325;establishment and/or maintenance of chromatin architecture;1.55718436186199e-16!GO:0000398;nuclear mRNA splicing, via spliceosome;1.61816867535241e-16!GO:0000375;RNA splicing, via transesterification reactions;1.61816867535241e-16!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.61816867535241e-16!GO:0006605;protein targeting;1.7415309689639e-16!GO:0005746;mitochondrial respiratory chain;1.8577964040965e-16!GO:0006323;DNA packaging;4.34576653228114e-16!GO:0031965;nuclear membrane;8.96202721733885e-16!GO:0016604;nuclear body;1.00741568287235e-15!GO:0004386;helicase activity;1.31257898141955e-15!GO:0043285;biopolymer catabolic process;1.74291954303237e-15!GO:0008219;cell death;1.99690636024772e-15!GO:0016265;death;1.99690636024772e-15!GO:0044432;endoplasmic reticulum part;2.18005723515963e-15!GO:0051726;regulation of cell cycle;4.72325762944983e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.72325762944983e-15!GO:0003954;NADH dehydrogenase activity;4.72325762944983e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.72325762944983e-15!GO:0000074;regulation of progression through cell cycle;4.87977191857022e-15!GO:0043412;biopolymer modification;7.14163314113092e-15!GO:0005783;endoplasmic reticulum;7.14163314113092e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.13287914604821e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.00407379247123e-14!GO:0006913;nucleocytoplasmic transport;1.91979829038509e-14!GO:0050657;nucleic acid transport;1.96370920793579e-14!GO:0051236;establishment of RNA localization;1.96370920793579e-14!GO:0050658;RNA transport;1.96370920793579e-14!GO:0009057;macromolecule catabolic process;2.60572117665535e-14!GO:0006403;RNA localization;2.68360631513444e-14!GO:0044248;cellular catabolic process;4.07027878035904e-14!GO:0051082;unfolded protein binding;4.08715238109887e-14!GO:0051169;nuclear transport;5.27325472207557e-14!GO:0006399;tRNA metabolic process;5.69412566350994e-14!GO:0000785;chromatin;6.26921595048063e-14!GO:0005643;nuclear pore;7.31534288293658e-14!GO:0006333;chromatin assembly or disassembly;1.34727550661809e-13!GO:0003743;translation initiation factor activity;1.95626065629626e-13!GO:0006364;rRNA processing;1.99677883390564e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.15236859993505e-13!GO:0042773;ATP synthesis coupled electron transport;2.15236859993505e-13!GO:0065002;intracellular protein transport across a membrane;3.74732753100954e-13!GO:0030964;NADH dehydrogenase complex (quinone);4.29133264039025e-13!GO:0045271;respiratory chain complex I;4.29133264039025e-13!GO:0005747;mitochondrial respiratory chain complex I;4.29133264039025e-13!GO:0016072;rRNA metabolic process;5.65013562109238e-13!GO:0006413;translational initiation;6.21755711523319e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.79513436777442e-13!GO:0008026;ATP-dependent helicase activity;1.08757646234251e-12!GO:0030163;protein catabolic process;2.02627124852831e-12!GO:0051028;mRNA transport;2.34246997287093e-12!GO:0016607;nuclear speck;3.1580052856261e-12!GO:0006464;protein modification process;3.26876609539745e-12!GO:0042175;nuclear envelope-endoplasmic reticulum network;3.6852158139963e-12!GO:0065004;protein-DNA complex assembly;6.40331438383797e-12!GO:0006446;regulation of translational initiation;8.61536203330849e-12!GO:0046930;pore complex;9.23085447374374e-12!GO:0005789;endoplasmic reticulum membrane;9.87377503534598e-12!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.90555770375755e-12!GO:0051186;cofactor metabolic process;1.15884773173258e-11!GO:0003712;transcription cofactor activity;1.31484680308516e-11!GO:0048770;pigment granule;1.67413434471066e-11!GO:0042470;melanosome;1.67413434471066e-11!GO:0043687;post-translational protein modification;3.42056507547414e-11!GO:0048193;Golgi vesicle transport;7.10929063360891e-11!GO:0048523;negative regulation of cellular process;9.25838384363562e-11!GO:0042981;regulation of apoptosis;9.43225677719105e-11!GO:0006261;DNA-dependent DNA replication;1.56294083903144e-10!GO:0043067;regulation of programmed cell death;1.69843010849183e-10!GO:0006732;coenzyme metabolic process;2.27129018178167e-10!GO:0017038;protein import;2.97208226682172e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.81500946757795e-10!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.32023384818217e-10!GO:0004812;aminoacyl-tRNA ligase activity;4.32023384818217e-10!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.32023384818217e-10!GO:0043566;structure-specific DNA binding;5.22325694639107e-10!GO:0050794;regulation of cellular process;5.3822621233489e-10!GO:0009055;electron carrier activity;8.77650742280987e-10!GO:0009259;ribonucleotide metabolic process;9.27442279003083e-10!GO:0015630;microtubule cytoskeleton;9.27442279003083e-10!GO:0043038;amino acid activation;1.14007289053426e-09!GO:0006418;tRNA aminoacylation for protein translation;1.14007289053426e-09!GO:0043039;tRNA aminoacylation;1.14007289053426e-09!GO:0006334;nucleosome assembly;1.20307161933331e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.56869448993427e-09!GO:0030532;small nuclear ribonucleoprotein complex;1.61010210589084e-09!GO:0031324;negative regulation of cellular metabolic process;1.87417294458376e-09!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.01241621634206e-09!GO:0003697;single-stranded DNA binding;2.18852643565665e-09!GO:0016563;transcription activator activity;2.35275095366099e-09!GO:0006163;purine nucleotide metabolic process;2.64075576699852e-09!GO:0016564;transcription repressor activity;2.91455037692648e-09!GO:0048519;negative regulation of biological process;3.08728062079085e-09!GO:0031497;chromatin assembly;3.79229347540237e-09!GO:0008565;protein transporter activity;4.04977125930936e-09!GO:0005794;Golgi apparatus;4.375284989586e-09!GO:0006357;regulation of transcription from RNA polymerase II promoter;5.23643288804519e-09!GO:0016568;chromatin modification;5.62849759171861e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.23120943115431e-09!GO:0006916;anti-apoptosis;6.71735102123414e-09!GO:0006164;purine nucleotide biosynthetic process;7.60032191030995e-09!GO:0043069;negative regulation of programmed cell death;8.32907709354204e-09!GO:0019222;regulation of metabolic process;8.99720124843859e-09!GO:0043066;negative regulation of apoptosis;1.04083654954064e-08!GO:0009260;ribonucleotide biosynthetic process;1.0432331719625e-08!GO:0051246;regulation of protein metabolic process;1.2105157231156e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.56170234480277e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.56170234480277e-08!GO:0008639;small protein conjugating enzyme activity;2.33178398657704e-08!GO:0009150;purine ribonucleotide metabolic process;2.43993020265408e-08!GO:0019829;cation-transporting ATPase activity;2.79803906934805e-08!GO:0004842;ubiquitin-protein ligase activity;4.09627160741577e-08!GO:0005839;proteasome core complex (sensu Eukaryota);5.31089467000216e-08!GO:0000775;chromosome, pericentric region;5.53553961259223e-08!GO:0016779;nucleotidyltransferase activity;6.21601536964344e-08!GO:0009152;purine ribonucleotide biosynthetic process;7.19957340445755e-08!GO:0006793;phosphorus metabolic process;7.6240711283613e-08!GO:0006796;phosphate metabolic process;7.6240711283613e-08!GO:0009892;negative regulation of metabolic process;9.4522323013279e-08!GO:0019787;small conjugating protein ligase activity;1.02889857858924e-07!GO:0015986;ATP synthesis coupled proton transport;1.10096599709161e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.10096599709161e-07!GO:0051188;cofactor biosynthetic process;1.40454613054171e-07!GO:0007005;mitochondrion organization and biogenesis;1.49560386242785e-07!GO:0005793;ER-Golgi intermediate compartment;1.5367616498e-07!GO:0006888;ER to Golgi vesicle-mediated transport;1.59053772728865e-07!GO:0005657;replication fork;1.68559409824202e-07!GO:0006461;protein complex assembly;1.69785829091143e-07!GO:0004298;threonine endopeptidase activity;2.27012553170871e-07!GO:0009060;aerobic respiration;2.34999803901829e-07!GO:0005819;spindle;2.57116871344925e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.60178913306852e-07!GO:0016740;transferase activity;2.7220005244226e-07!GO:0006310;DNA recombination;2.72441999447876e-07!GO:0031323;regulation of cellular metabolic process;2.8145169000867e-07!GO:0009142;nucleoside triphosphate biosynthetic process;2.82310479146156e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.82310479146156e-07!GO:0009141;nucleoside triphosphate metabolic process;2.93323311024824e-07!GO:0051170;nuclear import;3.22569784730113e-07!GO:0016881;acid-amino acid ligase activity;3.44038870582307e-07!GO:0009056;catabolic process;3.45477028826437e-07!GO:0016481;negative regulation of transcription;3.73802877437831e-07!GO:0051168;nuclear export;3.76520679541387e-07!GO:0000245;spliceosome assembly;3.842967787294e-07!GO:0016192;vesicle-mediated transport;4.62451401993555e-07!GO:0000075;cell cycle checkpoint;5.41173409626476e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;5.65532116195796e-07!GO:0009144;purine nucleoside triphosphate metabolic process;5.65532116195796e-07!GO:0031202;RNA splicing factor activity, transesterification mechanism;6.03110796572855e-07!GO:0005813;centrosome;6.1024553786418e-07!GO:0006606;protein import into nucleus;6.44253498412303e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.45739045021775e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.45739045021775e-07!GO:0016787;hydrolase activity;6.59398492096911e-07!GO:0051329;interphase of mitotic cell cycle;7.44640608117974e-07!GO:0015078;hydrogen ion transmembrane transporter activity;8.55549895029375e-07!GO:0045259;proton-transporting ATP synthase complex;8.7196243706379e-07!GO:0051325;interphase;9.09884438242768e-07!GO:0008094;DNA-dependent ATPase activity;9.79431396027027e-07!GO:0006350;transcription;1.06830486775888e-06!GO:0006754;ATP biosynthetic process;1.1170843902213e-06!GO:0006753;nucleoside phosphate metabolic process;1.1170843902213e-06!GO:0046034;ATP metabolic process;1.34045165204516e-06!GO:0009108;coenzyme biosynthetic process;1.44179220431325e-06!GO:0045333;cellular respiration;1.49393979952473e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.54807887032696e-06!GO:0005815;microtubule organizing center;1.55212427832125e-06!GO:0005667;transcription factor complex;1.72834952200629e-06!GO:0006752;group transfer coenzyme metabolic process;1.76193418744919e-06!GO:0006099;tricarboxylic acid cycle;1.8518825538415e-06!GO:0046356;acetyl-CoA catabolic process;1.8518825538415e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;1.91803453516262e-06!GO:0015399;primary active transmembrane transporter activity;1.91803453516262e-06!GO:0003702;RNA polymerase II transcription factor activity;1.98905958659128e-06!GO:0048475;coated membrane;2.31968207886223e-06!GO:0030117;membrane coat;2.31968207886223e-06!GO:0007051;spindle organization and biogenesis;2.35679097368429e-06!GO:0016310;phosphorylation;2.38155357155827e-06!GO:0045941;positive regulation of transcription;2.39397968560649e-06!GO:0003899;DNA-directed RNA polymerase activity;2.60767595999911e-06!GO:0050789;regulation of biological process;2.6324050684044e-06!GO:0045786;negative regulation of progression through cell cycle;2.70551770390436e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.75492591742162e-06!GO:0003677;DNA binding;2.83856746109181e-06!GO:0003724;RNA helicase activity;3.0110710402409e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.29223137472537e-06!GO:0005762;mitochondrial large ribosomal subunit;3.29223137472537e-06!GO:0000315;organellar large ribosomal subunit;3.29223137472537e-06!GO:0006084;acetyl-CoA metabolic process;3.43633575580186e-06!GO:0006613;cotranslational protein targeting to membrane;3.74485325053904e-06!GO:0003713;transcription coactivator activity;3.96425504940508e-06!GO:0006417;regulation of translation;4.35671096530023e-06!GO:0003682;chromatin binding;4.56402402567565e-06!GO:0006302;double-strand break repair;4.66221018814632e-06!GO:0030120;vesicle coat;4.78409996390329e-06!GO:0030662;coated vesicle membrane;4.78409996390329e-06!GO:0010468;regulation of gene expression;5.81191317465184e-06!GO:0016363;nuclear matrix;6.00954292940172e-06!GO:0008033;tRNA processing;9.85748735349789e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.18064111762836e-05!GO:0003690;double-stranded DNA binding;1.40487421316906e-05!GO:0004527;exonuclease activity;1.50546666874687e-05!GO:0000786;nucleosome;1.63379031654061e-05!GO:0003714;transcription corepressor activity;1.65692014301005e-05!GO:0005048;signal sequence binding;1.80182147144432e-05!GO:0007059;chromosome segregation;1.8476376515144e-05!GO:0006414;translational elongation;1.87375081823414e-05!GO:0009109;coenzyme catabolic process;1.87730733835192e-05!GO:0006402;mRNA catabolic process;1.89127298429894e-05!GO:0048522;positive regulation of cellular process;1.91896916310669e-05!GO:0032446;protein modification by small protein conjugation;1.92855201809632e-05!GO:0000314;organellar small ribosomal subunit;2.18893284493025e-05!GO:0005763;mitochondrial small ribosomal subunit;2.18893284493025e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.43432872557635e-05!GO:0006401;RNA catabolic process;2.43432872557635e-05!GO:0003684;damaged DNA binding;2.56528225735973e-05!GO:0009117;nucleotide metabolic process;2.63507939622906e-05!GO:0043021;ribonucleoprotein binding;2.69835213412636e-05!GO:0045893;positive regulation of transcription, DNA-dependent;2.70766477402375e-05!GO:0000776;kinetochore;2.77099740852003e-05!GO:0044452;nucleolar part;2.78325193241109e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.80423484354678e-05!GO:0003678;DNA helicase activity;2.92879431671659e-05!GO:0016741;transferase activity, transferring one-carbon groups;3.12697397398225e-05!GO:0016567;protein ubiquitination;3.12697397398225e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.75199397621911e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.97848339997268e-05!GO:0019899;enzyme binding;4.4902213882189e-05!GO:0007017;microtubule-based process;4.54959595599213e-05!GO:0032774;RNA biosynthetic process;4.56191550717051e-05!GO:0031326;regulation of cellular biosynthetic process;4.56191550717051e-05!GO:0005788;endoplasmic reticulum lumen;4.7783530485322e-05!GO:0008654;phospholipid biosynthetic process;4.87474708863017e-05!GO:0008168;methyltransferase activity;4.90277709619985e-05!GO:0006612;protein targeting to membrane;4.9702013906671e-05!GO:0043492;ATPase activity, coupled to movement of substances;5.57632004913905e-05!GO:0016853;isomerase activity;5.98027542245398e-05!GO:0007010;cytoskeleton organization and biogenesis;5.98749204601297e-05!GO:0006351;transcription, DNA-dependent;5.98749204601297e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;6.10759559165118e-05!GO:0043681;protein import into mitochondrion;6.63606278191137e-05!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;7.06731981205485e-05!GO:0045454;cell redox homeostasis;7.29333005785214e-05!GO:0007088;regulation of mitosis;7.77307255316525e-05!GO:0043623;cellular protein complex assembly;8.60918093301174e-05!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;8.62653322226892e-05!GO:0051052;regulation of DNA metabolic process;8.81340425442421e-05!GO:0005768;endosome;8.87387992537794e-05!GO:0051427;hormone receptor binding;8.92688591738369e-05!GO:0003729;mRNA binding;9.10062732281062e-05!GO:0008186;RNA-dependent ATPase activity;9.10062732281062e-05!GO:0045892;negative regulation of transcription, DNA-dependent;0.000109064864052438!GO:0006626;protein targeting to mitochondrion;0.00011504991134077!GO:0006839;mitochondrial transport;0.000153135315593494!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000156626406135458!GO:0051187;cofactor catabolic process;0.000157779007155783!GO:0030867;rough endoplasmic reticulum membrane;0.000159174296540242!GO:0006405;RNA export from nucleus;0.000164662195311854!GO:0035257;nuclear hormone receptor binding;0.000184646315279034!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00018472856006427!GO:0004518;nuclease activity;0.000192206712105743!GO:0000049;tRNA binding;0.000195794231293892!GO:0005874;microtubule;0.000196878225058463!GO:0006383;transcription from RNA polymerase III promoter;0.000199171616592883!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000211340653161088!GO:0031072;heat shock protein binding;0.000212251376429318!GO:0007243;protein kinase cascade;0.000216123904958361!GO:0007006;mitochondrial membrane organization and biogenesis;0.000224497000915214!GO:0005770;late endosome;0.000234350858674406!GO:0003924;GTPase activity;0.00024805954061684!GO:0000151;ubiquitin ligase complex;0.000252647253389254!GO:0006520;amino acid metabolic process;0.000258519398844906!GO:0004004;ATP-dependent RNA helicase activity;0.000275825213541364!GO:0005798;Golgi-associated vesicle;0.000279045116316071!GO:0005525;GTP binding;0.000295770998443804!GO:0009889;regulation of biosynthetic process;0.000351331818504078!GO:0044431;Golgi apparatus part;0.00035615291767113!GO:0016251;general RNA polymerase II transcription factor activity;0.000370732689090744!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000430235511208496!GO:0032508;DNA duplex unwinding;0.000459523545408725!GO:0032392;DNA geometric change;0.000459523545408725!GO:0030384;phosphoinositide metabolic process;0.000565120281995458!GO:0016859;cis-trans isomerase activity;0.000574692656078684!GO:0005637;nuclear inner membrane;0.000583051942729424!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00058343858265063!GO:0009893;positive regulation of metabolic process;0.000602560253621898!GO:0005885;Arp2/3 protein complex;0.000605214886602634!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000608812436087223!GO:0006091;generation of precursor metabolites and energy;0.000628548930170864!GO:0048500;signal recognition particle;0.000706937085516951!GO:0045449;regulation of transcription;0.000715418996028485!GO:0030880;RNA polymerase complex;0.000725781036162617!GO:0048468;cell development;0.000741357337219586!GO:0051789;response to protein stimulus;0.000776190576009242!GO:0006986;response to unfolded protein;0.000776190576009242!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000791963875990523!GO:0019752;carboxylic acid metabolic process;0.000802066339937537!GO:0046489;phosphoinositide biosynthetic process;0.000840186954598548!GO:0005684;U2-dependent spliceosome;0.000860541999810526!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.000868725685084987!GO:0000096;sulfur amino acid metabolic process;0.000868725685084987!GO:0006082;organic acid metabolic process;0.000881137665337103!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000898903544715331!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000898903544715331!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000898903544715331!GO:0031325;positive regulation of cellular metabolic process;0.000914279896499813!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000965519205787649!GO:0043065;positive regulation of apoptosis;0.000965519205787649!GO:0007093;mitotic cell cycle checkpoint;0.000975800643519184!GO:0030433;ER-associated protein catabolic process;0.00101879512568864!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00101879512568864!GO:0051920;peroxiredoxin activity;0.00107683341446312!GO:0006268;DNA unwinding during replication;0.00108401088557459!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.00111896798566138!GO:0042802;identical protein binding;0.00117429414304938!GO:0000059;protein import into nucleus, docking;0.00120289510161422!GO:0009165;nucleotide biosynthetic process;0.00121453725155671!GO:0000287;magnesium ion binding;0.00124565979502583!GO:0008139;nuclear localization sequence binding;0.00125852863944036!GO:0008312;7S RNA binding;0.00131028411975307!GO:0043068;positive regulation of programmed cell death;0.00131110121524418!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.00131541585047599!GO:0006650;glycerophospholipid metabolic process;0.00135917151568886!GO:0006611;protein export from nucleus;0.00136017393867723!GO:0005758;mitochondrial intermembrane space;0.00138439271416979!GO:0000082;G1/S transition of mitotic cell cycle;0.00139428402238196!GO:0006352;transcription initiation;0.00139656866283151!GO:0006284;base-excision repair;0.00146469862872043!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00149236677910135!GO:0000428;DNA-directed RNA polymerase complex;0.00149236677910135!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00149303072940231!GO:0051252;regulation of RNA metabolic process;0.00151747929467784!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.00156671729081819!GO:0045185;maintenance of protein localization;0.00157213305936276!GO:0019843;rRNA binding;0.00158147299793216!GO:0006289;nucleotide-excision repair;0.00164349652843177!GO:0032259;methylation;0.00166441104758303!GO:0042770;DNA damage response, signal transduction;0.00176165094687025!GO:0006818;hydrogen transport;0.00186163722563246!GO:0015992;proton transport;0.00190333580698825!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00193019019848587!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00193019019848587!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00198135061844969!GO:0045047;protein targeting to ER;0.00198135061844969!GO:0004532;exoribonuclease activity;0.00198256644102326!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00198256644102326!GO:0000097;sulfur amino acid biosynthetic process;0.00204313067513441!GO:0006695;cholesterol biosynthetic process;0.00207882573486907!GO:0007052;mitotic spindle organization and biogenesis;0.00217726505775764!GO:0016126;sterol biosynthetic process;0.00217726505775764!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00218349437739873!GO:0032561;guanyl ribonucleotide binding;0.00218631612209019!GO:0019001;guanyl nucleotide binding;0.00218631612209019!GO:0046474;glycerophospholipid biosynthetic process;0.00219951529057629!GO:0006275;regulation of DNA replication;0.00222355390142342!GO:0031124;mRNA 3'-end processing;0.00222653614843406!GO:0048518;positive regulation of biological process;0.0022448755833498!GO:0030663;COPI coated vesicle membrane;0.00228822361946921!GO:0030126;COPI vesicle coat;0.00228822361946921!GO:0031982;vesicle;0.00234888871545742!GO:0006270;DNA replication initiation;0.00237886599455222!GO:0004674;protein serine/threonine kinase activity;0.00240713687711018!GO:0003746;translation elongation factor activity;0.0024139646263934!GO:0031970;organelle envelope lumen;0.0024139646263934!GO:0032507;maintenance of cellular protein localization;0.00243470986687412!GO:0030176;integral to endoplasmic reticulum membrane;0.00250176743046591!GO:0006891;intra-Golgi vesicle-mediated transport;0.00256040479481857!GO:0051087;chaperone binding;0.0026412585336736!GO:0051539;4 iron, 4 sulfur cluster binding;0.002730239760313!GO:0031570;DNA integrity checkpoint;0.00278970194721568!GO:0043596;nuclear replication fork;0.00289066532711869!GO:0006355;regulation of transcription, DNA-dependent;0.00292334526147027!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00310468581758826!GO:0031123;RNA 3'-end processing;0.00330457872343053!GO:0009451;RNA modification;0.00340197645636998!GO:0008652;amino acid biosynthetic process;0.00341338670641569!GO:0048471;perinuclear region of cytoplasm;0.00347592408862393!GO:0030137;COPI-coated vesicle;0.00350216574146669!GO:0008408;3'-5' exonuclease activity;0.00355765262351129!GO:0065007;biological regulation;0.00378557105898116!GO:0006144;purine base metabolic process;0.00398910152407338!GO:0033116;ER-Golgi intermediate compartment membrane;0.00399256383884463!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0041385175415264!GO:0046467;membrane lipid biosynthetic process;0.00415241891841393!GO:0009112;nucleobase metabolic process;0.00417544444797333!GO:0016491;oxidoreductase activity;0.00437935723658095!GO:0005773;vacuole;0.00454378919212227!GO:0000139;Golgi membrane;0.00455205280978462!GO:0031988;membrane-bound vesicle;0.00459880889348426!GO:0046483;heterocycle metabolic process;0.00477007336509318!GO:0030134;ER to Golgi transport vesicle;0.00488731494661385!GO:0051235;maintenance of localization;0.00489917723073435!GO:0000922;spindle pole;0.00490194423731814!GO:0005876;spindle microtubule;0.00506395333353374!GO:0000228;nuclear chromosome;0.00509757355790144!GO:0007346;regulation of progression through mitotic cell cycle;0.00510260863239203!GO:0031968;organelle outer membrane;0.00511047821572247!GO:0006595;polyamine metabolic process;0.00517068365129139!GO:0019867;outer membrane;0.00524955689163099!GO:0000323;lytic vacuole;0.00525003455238455!GO:0005764;lysosome;0.00525003455238455!GO:0000339;RNA cap binding;0.00525947529819207!GO:0000725;recombinational repair;0.00528266728217545!GO:0000724;double-strand break repair via homologous recombination;0.00528266728217545!GO:0000819;sister chromatid segregation;0.00528360227604335!GO:0016272;prefoldin complex;0.00533667953677787!GO:0000178;exosome (RNase complex);0.00567155881713073!GO:0051651;maintenance of cellular localization;0.0057246422447818!GO:0051053;negative regulation of DNA metabolic process;0.00580112617304347!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00580677142684851!GO:0032200;telomere organization and biogenesis;0.00580677142684851!GO:0000723;telomere maintenance;0.00580677142684851!GO:0000792;heterochromatin;0.00580677142684851!GO:0000070;mitotic sister chromatid segregation;0.00583972239717418!GO:0030658;transport vesicle membrane;0.00586495822081981!GO:0008022;protein C-terminus binding;0.00595002716728926!GO:0006519;amino acid and derivative metabolic process;0.00627841156520393!GO:0019783;small conjugating protein-specific protease activity;0.00637102631537572!GO:0031410;cytoplasmic vesicle;0.00643502374707293!GO:0003711;transcription elongation regulator activity;0.00651442694303172!GO:0065009;regulation of a molecular function;0.00651941833170381!GO:0004003;ATP-dependent DNA helicase activity;0.00654822233111644!GO:0043414;biopolymer methylation;0.00698866208443236!GO:0008610;lipid biosynthetic process;0.0070813061898588!GO:0044440;endosomal part;0.00722526644109076!GO:0010008;endosome membrane;0.00722526644109076!GO:0016584;nucleosome positioning;0.00725700006138809!GO:0030127;COPII vesicle coat;0.00725734519859504!GO:0012507;ER to Golgi transport vesicle membrane;0.00725734519859504!GO:0006378;mRNA polyadenylation;0.00732494139115272!GO:0043488;regulation of mRNA stability;0.00732494139115272!GO:0043487;regulation of RNA stability;0.00732494139115272!GO:0004843;ubiquitin-specific protease activity;0.00733550762868544!GO:0016790;thiolester hydrolase activity;0.00737596980057499!GO:0043284;biopolymer biosynthetic process;0.00747137467622882!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00747137467622882!GO:0050662;coenzyme binding;0.00763581083364422!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.00766579690392363!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00787984371013095!GO:0015002;heme-copper terminal oxidase activity;0.00787984371013095!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00787984371013095!GO:0004129;cytochrome-c oxidase activity;0.00787984371013095!GO:0005669;transcription factor TFIID complex;0.0079448221206741!GO:0005853;eukaryotic translation elongation factor 1 complex;0.00804576330683607!GO:0006917;induction of apoptosis;0.00813818582192514!GO:0031252;leading edge;0.00819962335542847!GO:0043022;ribosome binding;0.00838135590224912!GO:0015980;energy derivation by oxidation of organic compounds;0.00838905701624815!GO:0000077;DNA damage checkpoint;0.00852521686812955!GO:0005832;chaperonin-containing T-complex;0.00902339661607564!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.00906923035468785!GO:0031902;late endosome membrane;0.00941410739433979!GO:0022415;viral reproductive process;0.0095611185406013!GO:0006730;one-carbon compound metabolic process;0.00968314837140862!GO:0003725;double-stranded RNA binding;0.00983566849402485!GO:0015631;tubulin binding;0.00991149705999731!GO:0046983;protein dimerization activity;0.0102702567751201!GO:0043601;nuclear replisome;0.0102906153244789!GO:0030894;replisome;0.0102906153244789!GO:0022890;inorganic cation transmembrane transporter activity;0.0105811853289887!GO:0012502;induction of programmed cell death;0.0108072373598736!GO:0016023;cytoplasmic membrane-bound vesicle;0.0110684772345313!GO:0006406;mRNA export from nucleus;0.0110793597569175!GO:0004221;ubiquitin thiolesterase activity;0.0114040086571626!GO:0004576;oligosaccharyl transferase activity;0.0115263009346101!GO:0000175;3'-5'-exoribonuclease activity;0.0115630793014546!GO:0005791;rough endoplasmic reticulum;0.0116074271683829!GO:0051540;metal cluster binding;0.0120459540061548!GO:0051536;iron-sulfur cluster binding;0.0120459540061548!GO:0006506;GPI anchor biosynthetic process;0.0123562505771306!GO:0042393;histone binding;0.0123967481181248!GO:0030118;clathrin coat;0.0129435731249177!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0131207211391218!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0133118062156951!GO:0000910;cytokinesis;0.0133303130933672!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0136283849776773!GO:0006400;tRNA modification;0.0137509870803846!GO:0005741;mitochondrial outer membrane;0.0141281382513649!GO:0006984;ER-nuclear signaling pathway;0.0141580443450743!GO:0051223;regulation of protein transport;0.0141580443450743!GO:0006376;mRNA splice site selection;0.0142149671262931!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0142149671262931!GO:0030660;Golgi-associated vesicle membrane;0.0145215443001123!GO:0000726;non-recombinational repair;0.0150439561923027!GO:0006505;GPI anchor metabolic process;0.0152237324019719!GO:0046822;regulation of nucleocytoplasmic transport;0.0155114502233729!GO:0046966;thyroid hormone receptor binding;0.0155974181462603!GO:0008538;proteasome activator activity;0.0163587178238439!GO:0045045;secretory pathway;0.0165240099702036!GO:0040029;regulation of gene expression, epigenetic;0.0165360915451818!GO:0030521;androgen receptor signaling pathway;0.0170634763711404!GO:0016788;hydrolase activity, acting on ester bonds;0.017596790210576!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0176229969453086!GO:0033673;negative regulation of kinase activity;0.0180291540954197!GO:0006469;negative regulation of protein kinase activity;0.0180291540954197!GO:0035258;steroid hormone receptor binding;0.0181168737565851!GO:0006338;chromatin remodeling;0.0182830065014687!GO:0008250;oligosaccharyl transferase complex;0.0189037028289251!GO:0008287;protein serine/threonine phosphatase complex;0.0190727275814187!GO:0016311;dephosphorylation;0.0190727275814187!GO:0006950;response to stress;0.0197010576040615!GO:0008276;protein methyltransferase activity;0.0197536593395313!GO:0006643;membrane lipid metabolic process;0.0199888320283984!GO:0006518;peptide metabolic process;0.0200225576033646!GO:0051348;negative regulation of transferase activity;0.0207653735584971!GO:0048487;beta-tubulin binding;0.0208154496784206!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0212932660287672!GO:0000738;DNA catabolic process, exonucleolytic;0.0215219151956911!GO:0042613;MHC class II protein complex;0.0216879751752922!GO:0006007;glucose catabolic process;0.021859764989401!GO:0043631;RNA polyadenylation;0.021859764989401!GO:0008320;protein transmembrane transporter activity;0.021859764989401!GO:0022884;macromolecule transmembrane transporter activity;0.0218815706250311!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0218815706250311!GO:0008180;signalosome;0.0218815706250311!GO:0009124;nucleoside monophosphate biosynthetic process;0.0226151654260694!GO:0009123;nucleoside monophosphate metabolic process;0.0226151654260694!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0226311438263105!GO:0045039;protein import into mitochondrial inner membrane;0.0226311438263105!GO:0009303;rRNA transcription;0.0227549051640996!GO:0031625;ubiquitin protein ligase binding;0.0227549051640996!GO:0006672;ceramide metabolic process;0.0228811728487619!GO:0000209;protein polyubiquitination;0.0230120423216986!GO:0008156;negative regulation of DNA replication;0.0230552418663376!GO:0008632;apoptotic program;0.0234728358069431!GO:0006497;protein amino acid lipidation;0.0241037914655401!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0246311495454996!GO:0030036;actin cytoskeleton organization and biogenesis;0.024850950711212!GO:0005663;DNA replication factor C complex;0.02557452271963!GO:0003756;protein disulfide isomerase activity;0.0257006259579279!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0257006259579279!GO:0046979;TAP2 binding;0.0260077487423592!GO:0046977;TAP binding;0.0260077487423592!GO:0046978;TAP1 binding;0.0260077487423592!GO:0006220;pyrimidine nucleotide metabolic process;0.026261215720918!GO:0043130;ubiquitin binding;0.026261215720918!GO:0032182;small conjugating protein binding;0.026261215720918!GO:0007050;cell cycle arrest;0.0264796605596031!GO:0004748;ribonucleoside-diphosphate reductase activity;0.0267527730011009!GO:0016728;oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor;0.0267527730011009!GO:0008637;apoptotic mitochondrial changes;0.0268803313378574!GO:0007569;cell aging;0.0271955561665158!GO:0019976;interleukin-2 binding;0.0272296844360606!GO:0004911;interleukin-2 receptor activity;0.0272296844360606!GO:0000781;chromosome, telomeric region;0.0272378712150445!GO:0008299;isoprenoid biosynthetic process;0.0272746308707543!GO:0030496;midbody;0.0277336939081518!GO:0006301;postreplication repair;0.0280838985100022!GO:0008097;5S rRNA binding;0.0285888364460547!GO:0046112;nucleobase biosynthetic process;0.0286328930655503!GO:0003727;single-stranded RNA binding;0.0287921334341144!GO:0004523;ribonuclease H activity;0.029261871618708!GO:0044454;nuclear chromosome part;0.0295474202267131!GO:0047485;protein N-terminus binding;0.0299724806448132!GO:0009116;nucleoside metabolic process;0.0304973679685816!GO:0005869;dynactin complex;0.03081031399996!GO:0046519;sphingoid metabolic process;0.0312206720802203!GO:0005732;small nucleolar ribonucleoprotein complex;0.0315073160567522!GO:0005850;eukaryotic translation initiation factor 2 complex;0.031529553071499!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0318396134050497!GO:0006356;regulation of transcription from RNA polymerase I promoter;0.0320433761648195!GO:0051287;NAD binding;0.0320525113913979!GO:0008629;induction of apoptosis by intracellular signals;0.0332889296312403!GO:0018196;peptidyl-asparagine modification;0.0343201940914785!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0343201940914785!GO:0004721;phosphoprotein phosphatase activity;0.0343242205106017!GO:0005652;nuclear lamina;0.0343242205106017!GO:0009067;aspartate family amino acid biosynthetic process;0.0343242205106017!GO:0051258;protein polymerization;0.0345501440853598!GO:0032984;macromolecular complex disassembly;0.034659507772628!GO:0030041;actin filament polymerization;0.0347288830913633!GO:0016408;C-acyltransferase activity;0.0356162412452287!GO:0009066;aspartate family amino acid metabolic process;0.0360317490686411!GO:0016585;chromatin remodeling complex;0.0363776259831052!GO:0044450;microtubule organizing center part;0.0367252640202057!GO:0006596;polyamine biosynthetic process;0.0370737000199731!GO:0016791;phosphoric monoester hydrolase activity;0.0373516869427591!GO:0005784;translocon complex;0.0373516869427591!GO:0019238;cyclohydrolase activity;0.037559725475554!GO:0030508;thiol-disulfide exchange intermediate activity;0.0378623328641475!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0390751924815781!GO:0032039;integrator complex;0.039351755106732!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0398064128005233!GO:0051881;regulation of mitochondrial membrane potential;0.0402345575491303!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0404580607915474!GO:0030833;regulation of actin filament polymerization;0.0407200425902059!GO:0008017;microtubule binding;0.0407563524095855!GO:0008537;proteasome activator complex;0.0408095042523485!GO:0007034;vacuolar transport;0.0408913793032519!GO:0005658;alpha DNA polymerase:primase complex;0.0413858218930982!GO:0051059;NF-kappaB binding;0.0417161576939695!GO:0030119;AP-type membrane coat adaptor complex;0.0420318880676302!GO:0009396;folic acid and derivative biosynthetic process;0.0421873461524697!GO:0031529;ruffle organization and biogenesis;0.0422407876955388!GO:0008234;cysteine-type peptidase activity;0.0425160152310266!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0428406012784275!GO:0031577;spindle checkpoint;0.0438845973503684!GO:0031371;ubiquitin conjugating enzyme complex;0.0438845973503684!GO:0006644;phospholipid metabolic process;0.0444343611465272!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0446427201205298!GO:0046488;phosphatidylinositol metabolic process;0.0448216567570025!GO:0016197;endosome transport;0.0451699448933394!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0451699448933394!GO:0010257;NADH dehydrogenase complex assembly;0.0451699448933394!GO:0033108;mitochondrial respiratory chain complex assembly;0.0451699448933394!GO:0030968;unfolded protein response;0.0459772936677047!GO:0009967;positive regulation of signal transduction;0.0459772936677047!GO:0004540;ribonuclease activity;0.0461972820959387!GO:0004659;prenyltransferase activity;0.0464963644037295!GO:0006465;signal peptide processing;0.0466695826807859!GO:0051656;establishment of organelle localization;0.0468768896734784!GO:0042026;protein refolding;0.0473781151194272!GO:0009161;ribonucleoside monophosphate metabolic process;0.0474143678630287!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0474143678630287!GO:0000152;nuclear ubiquitin ligase complex;0.0474952388331796!GO:0048037;cofactor binding;0.0485001226949347!GO:0009308;amine metabolic process;0.0485054330370569!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0489001729863989!GO:0043241;protein complex disassembly;0.0494894261448043!GO:0008173;RNA methyltransferase activity;0.0496445251646885!GO:0005769;early endosome;0.0498613648712835!GO:0046426;negative regulation of JAK-STAT cascade;0.0498613648712835!GO:0006096;glycolysis;0.0498613648712835 | |||
|sample_id=10453 | |sample_id=10453 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=blood | |sample_tissue=blood | ||
|top_motifs=HOX{A6,A7,B6,B7}:1.95160735081;NFKB1_REL_RELA:1.78976138304;NFY{A,B,C}:1.71043348545;TLX2:1.65231652568;YY1:1.63149742272;E2F1..5:1.60626598453;HOXA9_MEIS1:1.5225882162;FOXP3:1.43849035879;NKX2-1,4:1.42110496741;CREB1:1.30885092753;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.30586523448;FOXP1:1.27253427556;GFI1:1.18934222907;BREu{core}:1.17356155303;RBPJ:1.15181441435;CRX:1.14869180682;MYB:1.12883380461;ATF4:1.12346171495;PAX4:1.08893212578;STAT5{A,B}:1.04825517698;ELF1,2,4:0.996359661605;POU3F1..4:0.996165482484;TEF:0.980781046476;AIRE:0.942184882829;RORA:0.939487306097;NRF1:0.933716835112;HES1:0.933237454587;STAT2,4,6:0.921455064601;ELK1,4_GABP{A,B1}:0.915065192711;TFDP1:0.793759290751;PAX8:0.764058722328;DBP:0.694176608949;ZFP161:0.689376972435;NANOG:0.681313237726;ONECUT1,2:0.650359518032;MYOD1:0.645227405265;PBX1:0.635680749845;POU2F1..3:0.627701872836;POU1F1:0.606321865991;AHR_ARNT_ARNT2:0.605097649567;PITX1..3:0.600606830952;RFX2..5_RFXANK_RFXAP:0.581272505699;ZNF143:0.553697017101;CDX1,2,4:0.545774486069;ATF5_CREB3:0.54560254748;LEF1_TCF7_TCF7L1,2:0.53104050542;HSF1,2:0.512742791167;RUNX1..3:0.504789572634;ESRRA:0.492094150523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464347335362;ADNP_IRX_SIX_ZHX:0.423093072083;TGIF1:0.422201021249;ATF6:0.393994788216;FOXQ1:0.373637151902;FOXM1:0.366424921167;GCM1,2:0.353738670475;SOX{8,9,10}:0.335910325236;EVI1:0.331501602093;CUX2:0.327639596065;NFE2L1:0.313051418375;PDX1:0.288499894493;SOX17:0.282794525138;SPI1:0.254334760139;PAX1,9:0.254176442402;ESR1:0.244820536112;IRF1,2:0.236500226605;STAT1,3:0.221567248993;bHLH_family:0.22066913116;ZBTB16:0.219378197312;NKX6-1,2:0.171108377697;BPTF:0.154737534057;JUN:0.147592276583;POU5F1:0.139304923288;HIF1A:0.120147284089;FOXN1:0.113416278014;EGR1..3:0.0934498360426;PAX3,7:0.0803791686062;RXR{A,B,G}:0.0619151277101;TP53:0.0603944898272;GATA6:0.0533511472148;ZNF148:-0.00119186812144;TOPORS:-0.00861797408232;MTE{core}:-0.0165116524992;MYFfamily:-0.0587416013998;CEBPA,B_DDIT3:-0.0861517789988;MAFB:-0.11127764544;RREB1:-0.113205178379;ATF2:-0.121917275593;SOX5:-0.131789283767;HIC1:-0.139446999195;SPIB:-0.160119500433;PAX6:-0.161246618701;HNF4A_NR2F1,2:-0.170653642306;ETS1,2:-0.171102838219;RFX1:-0.186285629046;REST:-0.189350704385;NR5A1,2:-0.190458401226;TFAP2{A,C}:-0.194917014746;HOX{A4,D4}:-0.21856932423;POU6F1:-0.23054458493;HNF1A:-0.250523290823;XBP1:-0.258844627954;FOS_FOS{B,L1}_JUN{B,D}:-0.261017220053;FOSL2:-0.266379364557;NKX3-1:-0.268381768329;LHX3,4:-0.27443704991;PRRX1,2:-0.275006346035;PAX5:-0.27789311466;SOX2:-0.282662961783;NFE2:-0.286926307153;SNAI1..3:-0.300398288897;FOX{I1,J2}:-0.301527640498;MED-1{core}:-0.320283842826;FOXA2:-0.328168956076;ZIC1..3:-0.340397855632;TFAP2B:-0.349534372816;NFATC1..3:-0.35174797446;GFI1B:-0.359998713402;IKZF2:-0.360324983581;FOX{F1,F2,J1}:-0.362422461529;VSX1,2:-0.370178807798;SRF:-0.373584053649;NR1H4:-0.396720474359;PATZ1:-0.399287598425;BACH2:-0.447026733451;MYBL2:-0.452595482521;MEF2{A,B,C,D}:-0.46240830851;ZEB1:-0.468430835653;NKX3-2:-0.490001562896;IRF7:-0.495457324786;OCT4_SOX2{dimer}:-0.505924121605;FOXD3:-0.507735205098;PAX2:-0.511317986351;DMAP1_NCOR{1,2}_SMARC:-0.515878293646;LMO2:-0.517888252514;SREBF1,2:-0.522503276316;UFEwm:-0.52455188393;AR:-0.52685841904;HLF:-0.532085925305;ARID5B:-0.535389261397;EBF1:-0.55170421021;ZNF423:-0.573750895015;NFE2L2:-0.582655815868;ZNF384:-0.58546343138;IKZF1:-0.608207559892;NR6A1:-0.64491218166;NKX2-3_NKX2-5:-0.686130474285;HBP1_HMGB_SSRP1_UBTF:-0.702887065524;MZF1:-0.742705263981;NFIL3:-0.749730211375;PRDM1:-0.764577159959;RXRA_VDR{dimer}:-0.777949383642;XCPE1{core}:-0.806047915106;TBX4,5:-0.809737945842;TFAP4:-0.83551350686;KLF4:-0.851919621638;GZF1:-0.853114903157;TBP:-0.860124225925;GATA4:-0.875421960847;NHLH1,2:-0.887682677064;ALX1:-0.888956993879;HMX1:-0.890841501246;HOX{A5,B5}:-0.928255181644;MTF1:-0.947010554572;CDC5L:-0.955598640817;HAND1,2:-0.994508458566;NANOG{mouse}:-1.02900199565;EP300:-1.04124636261;NFIX:-1.05782657468;HMGA1,2:-1.10262030991;GTF2A1,2:-1.16292621691;TEAD1:-1.1847690354;EN1,2:-1.1863017014;NKX2-2,8:-1.19775048455;ZBTB6:-1.19960778557;GTF2I:-1.20504929641;ZNF238:-1.26855668311;FOX{D1,D2}:-1.26963644608;FOXL1:-1.30252367256;MAZ:-1.30794685899;TAL1_TCF{3,4,12}:-1.43396630346;PPARG:-1.43792692053;TFCP2:-1.49013205553;FOXO1,3,4:-1.49612892049;NR3C1:-1.51308312489;SP1:-1.54181080401;TLX1..3_NFIC{dimer}:-1.55665692089;GLI1..3:-1.57277115956;SMAD1..7,9:-1.61905357837;ALX4:-1.69054832744;SPZ1:-2.24394521222;T:-2.62617095875 | |top_motifs=HOX{A6,A7,B6,B7}:1.95160735081;NFKB1_REL_RELA:1.78976138304;NFY{A,B,C}:1.71043348545;TLX2:1.65231652568;YY1:1.63149742272;E2F1..5:1.60626598453;HOXA9_MEIS1:1.5225882162;FOXP3:1.43849035879;NKX2-1,4:1.42110496741;CREB1:1.30885092753;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.30586523448;FOXP1:1.27253427556;GFI1:1.18934222907;BREu{core}:1.17356155303;RBPJ:1.15181441435;CRX:1.14869180682;MYB:1.12883380461;ATF4:1.12346171495;PAX4:1.08893212578;STAT5{A,B}:1.04825517698;ELF1,2,4:0.996359661605;POU3F1..4:0.996165482484;TEF:0.980781046476;AIRE:0.942184882829;RORA:0.939487306097;NRF1:0.933716835112;HES1:0.933237454587;STAT2,4,6:0.921455064601;ELK1,4_GABP{A,B1}:0.915065192711;TFDP1:0.793759290751;PAX8:0.764058722328;DBP:0.694176608949;ZFP161:0.689376972435;NANOG:0.681313237726;ONECUT1,2:0.650359518032;MYOD1:0.645227405265;PBX1:0.635680749845;POU2F1..3:0.627701872836;POU1F1:0.606321865991;AHR_ARNT_ARNT2:0.605097649567;PITX1..3:0.600606830952;RFX2..5_RFXANK_RFXAP:0.581272505699;ZNF143:0.553697017101;CDX1,2,4:0.545774486069;ATF5_CREB3:0.54560254748;LEF1_TCF7_TCF7L1,2:0.53104050542;HSF1,2:0.512742791167;RUNX1..3:0.504789572634;ESRRA:0.492094150523;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.464347335362;ADNP_IRX_SIX_ZHX:0.423093072083;TGIF1:0.422201021249;ATF6:0.393994788216;FOXQ1:0.373637151902;FOXM1:0.366424921167;GCM1,2:0.353738670475;SOX{8,9,10}:0.335910325236;EVI1:0.331501602093;CUX2:0.327639596065;NFE2L1:0.313051418375;PDX1:0.288499894493;SOX17:0.282794525138;SPI1:0.254334760139;PAX1,9:0.254176442402;ESR1:0.244820536112;IRF1,2:0.236500226605;STAT1,3:0.221567248993;bHLH_family:0.22066913116;ZBTB16:0.219378197312;NKX6-1,2:0.171108377697;BPTF:0.154737534057;JUN:0.147592276583;POU5F1:0.139304923288;HIF1A:0.120147284089;FOXN1:0.113416278014;EGR1..3:0.0934498360426;PAX3,7:0.0803791686062;RXR{A,B,G}:0.0619151277101;TP53:0.0603944898272;GATA6:0.0533511472148;ZNF148:-0.00119186812144;TOPORS:-0.00861797408232;MTE{core}:-0.0165116524992;MYFfamily:-0.0587416013998;CEBPA,B_DDIT3:-0.0861517789988;MAFB:-0.11127764544;RREB1:-0.113205178379;ATF2:-0.121917275593;SOX5:-0.131789283767;HIC1:-0.139446999195;SPIB:-0.160119500433;PAX6:-0.161246618701;HNF4A_NR2F1,2:-0.170653642306;ETS1,2:-0.171102838219;RFX1:-0.186285629046;REST:-0.189350704385;NR5A1,2:-0.190458401226;TFAP2{A,C}:-0.194917014746;HOX{A4,D4}:-0.21856932423;POU6F1:-0.23054458493;HNF1A:-0.250523290823;XBP1:-0.258844627954;FOS_FOS{B,L1}_JUN{B,D}:-0.261017220053;FOSL2:-0.266379364557;NKX3-1:-0.268381768329;LHX3,4:-0.27443704991;PRRX1,2:-0.275006346035;PAX5:-0.27789311466;SOX2:-0.282662961783;NFE2:-0.286926307153;SNAI1..3:-0.300398288897;FOX{I1,J2}:-0.301527640498;MED-1{core}:-0.320283842826;FOXA2:-0.328168956076;ZIC1..3:-0.340397855632;TFAP2B:-0.349534372816;NFATC1..3:-0.35174797446;GFI1B:-0.359998713402;IKZF2:-0.360324983581;FOX{F1,F2,J1}:-0.362422461529;VSX1,2:-0.370178807798;SRF:-0.373584053649;NR1H4:-0.396720474359;PATZ1:-0.399287598425;BACH2:-0.447026733451;MYBL2:-0.452595482521;MEF2{A,B,C,D}:-0.46240830851;ZEB1:-0.468430835653;NKX3-2:-0.490001562896;IRF7:-0.495457324786;OCT4_SOX2{dimer}:-0.505924121605;FOXD3:-0.507735205098;PAX2:-0.511317986351;DMAP1_NCOR{1,2}_SMARC:-0.515878293646;LMO2:-0.517888252514;SREBF1,2:-0.522503276316;UFEwm:-0.52455188393;AR:-0.52685841904;HLF:-0.532085925305;ARID5B:-0.535389261397;EBF1:-0.55170421021;ZNF423:-0.573750895015;NFE2L2:-0.582655815868;ZNF384:-0.58546343138;IKZF1:-0.608207559892;NR6A1:-0.64491218166;NKX2-3_NKX2-5:-0.686130474285;HBP1_HMGB_SSRP1_UBTF:-0.702887065524;MZF1:-0.742705263981;NFIL3:-0.749730211375;PRDM1:-0.764577159959;RXRA_VDR{dimer}:-0.777949383642;XCPE1{core}:-0.806047915106;TBX4,5:-0.809737945842;TFAP4:-0.83551350686;KLF4:-0.851919621638;GZF1:-0.853114903157;TBP:-0.860124225925;GATA4:-0.875421960847;NHLH1,2:-0.887682677064;ALX1:-0.888956993879;HMX1:-0.890841501246;HOX{A5,B5}:-0.928255181644;MTF1:-0.947010554572;CDC5L:-0.955598640817;HAND1,2:-0.994508458566;NANOG{mouse}:-1.02900199565;EP300:-1.04124636261;NFIX:-1.05782657468;HMGA1,2:-1.10262030991;GTF2A1,2:-1.16292621691;TEAD1:-1.1847690354;EN1,2:-1.1863017014;NKX2-2,8:-1.19775048455;ZBTB6:-1.19960778557;GTF2I:-1.20504929641;ZNF238:-1.26855668311;FOX{D1,D2}:-1.26963644608;FOXL1:-1.30252367256;MAZ:-1.30794685899;TAL1_TCF{3,4,12}:-1.43396630346;PPARG:-1.43792692053;TFCP2:-1.49013205553;FOXO1,3,4:-1.49612892049;NR3C1:-1.51308312489;SP1:-1.54181080401;TLX1..3_NFIC{dimer}:-1.55665692089;GLI1..3:-1.57277115956;SMAD1..7,9:-1.61905357837;ALX4:-1.69054832744;SPZ1:-2.24394521222;T:-2.62617095875 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10453-106G3;search_select_hide=table117:FF:10453-106G3 | |||
}} | }} | ||
Latest revision as of 14:03, 3 June 2020
| Name: | cord blood derived cell line:COBL-a 24h infection |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11050 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11050
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11050
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.974 |
| 10 | 10 | 0.135 |
| 100 | 100 | 0.183 |
| 101 | 101 | 0.216 |
| 102 | 102 | 0.954 |
| 103 | 103 | 0.43 |
| 104 | 104 | 0.752 |
| 105 | 105 | 0.536 |
| 106 | 106 | 0.0409 |
| 107 | 107 | 0.0289 |
| 108 | 108 | 0.492 |
| 109 | 109 | 0.978 |
| 11 | 11 | 0.606 |
| 110 | 110 | 0.177 |
| 111 | 111 | 0.474 |
| 112 | 112 | 0.617 |
| 113 | 113 | 0.7 |
| 114 | 114 | 0.237 |
| 115 | 115 | 0.629 |
| 116 | 116 | 0.45 |
| 117 | 117 | 0.51 |
| 118 | 118 | 0.423 |
| 119 | 119 | 0.433 |
| 12 | 12 | 0.52 |
| 120 | 120 | 0.978 |
| 121 | 121 | 0.893 |
| 122 | 122 | 0.276 |
| 123 | 123 | 0.152 |
| 124 | 124 | 0.373 |
| 125 | 125 | 0.602 |
| 126 | 126 | 0.935 |
| 127 | 127 | 0.977 |
| 128 | 128 | 0.0258 |
| 129 | 129 | 0.393 |
| 13 | 13 | 0.215 |
| 130 | 130 | 0.791 |
| 131 | 131 | 0.489 |
| 132 | 132 | 0.396 |
| 133 | 133 | 0.975 |
| 134 | 134 | 0.301 |
| 135 | 135 | 0.812 |
| 136 | 136 | 0.465 |
| 137 | 137 | 0.503 |
| 138 | 138 | 0.153 |
| 139 | 139 | 0.555 |
| 14 | 14 | 0.792 |
| 140 | 140 | 0.324 |
| 141 | 141 | 0.245 |
| 142 | 142 | 0.991 |
| 143 | 143 | 0.99 |
| 144 | 144 | 0.494 |
| 145 | 145 | 0.434 |
| 146 | 146 | 0.291 |
| 147 | 147 | 0.131 |
| 148 | 148 | 0.222 |
| 149 | 149 | 0.00691 |
| 15 | 15 | 0.708 |
| 150 | 150 | 0.465 |
| 151 | 151 | 0.319 |
| 152 | 152 | 0.0794 |
| 153 | 153 | 0.209 |
| 154 | 154 | 0.788 |
| 155 | 155 | 0.403 |
| 156 | 156 | 0.681 |
| 157 | 157 | 0.938 |
| 158 | 158 | 0.998 |
| 159 | 159 | 0.485 |
| 16 | 16 | 0.281 |
| 160 | 160 | 0.35 |
| 161 | 161 | 0.54 |
| 162 | 162 | 0.153 |
| 163 | 163 | 0.56 |
| 164 | 164 | 0.711 |
| 165 | 165 | 0.84 |
| 166 | 166 | 0.81 |
| 167 | 167 | 0.142 |
| 168 | 168 | 0.549 |
| 169 | 169 | 0.0292 |
| 17 | 17 | 0.339 |
| 18 | 18 | 0.731 |
| 19 | 19 | 0.0241 |
| 2 | 2 | 0.119 |
| 20 | 20 | 0.146 |
| 21 | 21 | 0.0244 |
| 22 | 22 | 0.0687 |
| 23 | 23 | 0.0171 |
| 24 | 24 | 0.221 |
| 25 | 25 | 0.55 |
| 26 | 26 | 0.682 |
| 27 | 27 | 0.285 |
| 28 | 28 | 0.63 |
| 29 | 29 | 0.487 |
| 3 | 3 | 0.588 |
| 30 | 30 | 0.0306 |
| 31 | 31 | 0.251 |
| 32 | 32 | 0.0319 |
| 33 | 33 | 0.861 |
| 34 | 34 | 0.226 |
| 35 | 35 | 0.789 |
| 36 | 36 | 0.0649 |
| 37 | 37 | 0.641 |
| 38 | 38 | 0.512 |
| 39 | 39 | 0.155 |
| 4 | 4 | 0.194 |
| 40 | 40 | 0.959 |
| 41 | 41 | 0.23 |
| 42 | 42 | 0.464 |
| 43 | 43 | 0.437 |
| 44 | 44 | 0.957 |
| 45 | 45 | 0.0705 |
| 46 | 46 | 0.595 |
| 47 | 47 | 0.955 |
| 48 | 48 | 0.859 |
| 49 | 49 | 0.706 |
| 5 | 5 | 0.162 |
| 50 | 50 | 0.731 |
| 51 | 51 | 0.625 |
| 52 | 52 | 0.0993 |
| 53 | 53 | 0.662 |
| 54 | 54 | 0.226 |
| 55 | 55 | 6.232e-4 |
| 56 | 56 | 0.792 |
| 57 | 57 | 0.971 |
| 58 | 58 | 0.709 |
| 59 | 59 | 0.148 |
| 6 | 6 | 0.974 |
| 60 | 60 | 0.234 |
| 61 | 61 | 0.58 |
| 62 | 62 | 0.965 |
| 63 | 63 | 0.385 |
| 64 | 64 | 0.692 |
| 65 | 65 | 0.246 |
| 66 | 66 | 0.0365 |
| 67 | 67 | 0.161 |
| 68 | 68 | 0.122 |
| 69 | 69 | 0.0524 |
| 7 | 7 | 0.748 |
| 70 | 70 | 0.123 |
| 71 | 71 | 0.495 |
| 72 | 72 | 0.271 |
| 73 | 73 | 0.123 |
| 74 | 74 | 0.494 |
| 75 | 75 | 0.769 |
| 76 | 76 | 0.268 |
| 77 | 77 | 0.00413 |
| 78 | 78 | 0.32 |
| 79 | 79 | 0.0223 |
| 8 | 8 | 0.489 |
| 80 | 80 | 0.377 |
| 81 | 81 | 0.571 |
| 82 | 82 | 0.106 |
| 83 | 83 | 0.262 |
| 84 | 84 | 0.358 |
| 85 | 85 | 0.0208 |
| 86 | 86 | 0.787 |
| 87 | 87 | 0.351 |
| 88 | 88 | 0.455 |
| 89 | 89 | 0.0224 |
| 9 | 9 | 0.18 |
| 90 | 90 | 0.886 |
| 91 | 91 | 0.478 |
| 92 | 92 | 0.234 |
| 93 | 93 | 0.634 |
| 94 | 94 | 0.979 |
| 95 | 95 | 0.467 |
| 96 | 96 | 0.797 |
| 97 | 97 | 0.0419 |
| 98 | 98 | 0.138 |
| 99 | 99 | 0.115 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11050
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000625 experimental infection sample
FF:0104053 umbilical cord blood sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000080 (circulating cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000178 (blood)
0002331 (umbilical cord)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000179 (haemolymphatic fluid)
0000463 (organism substance)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000478 (extraembryonic structure)
0010317 (germ layer / neural crest derived structure)
0002390 (hematopoietic system)
0004535 (cardiovascular system)
0002193 (hemolymphoid system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0101035 (hematopoietic cell line sample)
0104053 (umbilical cord blood sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
