FF:11241-116D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004887 | ||
|ancestors_in_cell_lineage_facet=CL:0000000 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004887 | ||
|accession_numbers=CAGE;DRX008367;DRR009239;DRZ000664;DRZ002049;DRZ012014;DRZ013399 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037139;DRR041505;DRZ007147 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001134,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002036,UBERON:0002385,UBERON:0010317,UBERON:0001015,UBERON:0002204,UBERON:0000383 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0000680,CL:0002321,CL:0002371,CL:0000056,CL:0000255,CL:0000515 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000164 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.38!241.21!MYF5;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.89!DRAP1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!32.58!HOXC5;;chr11:17741111..17741124,+!p1@MYOD1!1.49!29.82!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.41!24.61!EBF2;;chr1:40105299..40105326,-!p1@HEYL!1.40!24.32!HEYL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.73!ZBED1;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.91!TWIST1;;chr12:54402745..54402788,+!p1@HOXC8!1.22!15.78!HOXC8;;chr11:65687362..65687436,+!p3@DRAP1!1.20!67.32!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.63!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.18!16.07!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!57.62!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!1.17!17.66!DRAP1;;chr1:203055129..203055147,-!p1@MYOG!1.13!12.45!MYOG;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.87!OSR1;;chr2:85981107..85981120,+!p3@ATOH8!1.08!11.15!ATOH8;;chr11:65687243..65687276,+!p8@DRAP1!1.06!14.19!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!1.03!91.50!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!60.95!SNAI2;;chr14:61116183..61116208,-!p1@SIX1!1.01!36.05!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.12!HOXC9;;chr14:62162285..62162296,+!p3@HIF1A!1.00!47.34!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!1.00!22.59!FOXC2;;chr15:57511609..57511651,+!p2@TCF12!1.00!15.20!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.99!13.61!ZBTB38;;chr14:62162258..62162269,+!p2@HIF1A!0.98!83.97!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.98!34.02!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.25!HOXC10;;chr10:131762504..131762555,-!p1@EBF3!0.96!8.11!EBF3;;chr7:15726296..15726315,-!p1@MEOX2!0.96!8.11!MEOX2;;chr10:31607702..31607755,+!p3@ZEB1!0.93!8.69!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.93!7.53!HOXB6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.24!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.92!7.24!HMGA2;;chr2:85981073..85981091,+!p5@ATOH8!0.92!7.24!ATOH8;;chr11:46299199..46299233,+!p1@CREB3L1!0.91!38.66!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.25!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.09!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.90!6.95!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.89!32.43!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!0.88!6.52!PITX2;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.23!NPAS1;;chr11:46299539..46299620,+!p2@CREB3L1!0.85!10.71!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.94!HMGA2;;chr11:17741254..17741282,+!p2@MYOD1!0.84!5.94!MYOD1;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.60!CREB3;;chr8:49833978..49833996,-!p1@SNAI2!0.82!124.22!SNAI2;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.65!KLF17;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.50!SIX2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.09!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.94!TWIST2;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.60!RBPJ;;chr2:85981027..85981047,+!p8@ATOH8!0.77!4.92!ATOH8;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.11!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.53!RUNX1;;chr2:85981008..85981025,+!p7@ATOH8!0.76!4.78!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.75!7.24!ENO1;;chr12:54380036..54380091,+!p4@HOXC10!0.75!4.63!HOXC10;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.63!RFX8;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!0.74!4.49!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.49!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.20!HOXC8;;chr11:65667846..65667868,-!p1@FOSL1!0.71!124.80!FOSL1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.65!SKIL;;chr1:170632723..170632739,+!p8@PRRX1!0.70!4.05!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.09!TWIST2;;chr10:31610110..31610159,+!p2@ZEB1!0.69!3.91!ZEB1;;chr12:54402790..54402805,+!p2@HOXC8!0.69!3.91!HOXC8;;chr7:15726243..15726293,-!p2@MEOX2!0.69!3.91!MEOX2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.60!ZHX3;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.76!HOXA9;;chr10:31607811..31607837,+!p6@ZEB1!0.68!3.76!ZEB1;;chr12:54394309..54394336,+!p2@HOXC9!0.68!3.76!HOXC9;;chr2:119605214..119605230,-!p1@EN1!0.68!3.76!EN1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.31!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!17.66!ZBTB20;;chr1:170632250..170632277,+!p7@PRRX1!0.66!3.62!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.65!9.70!TWIST1;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.36!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.07!HOXB7;;chr4:26323870..26323885,+!p13@RBPJ!0.65!3.47!RBPJ;;chr1:23885981..23886002,-!p1@ID3!0.64!696.40!ID3;;chr12:53614115..53614154,-!p1@RARG!0.64!20.70!RARG;;chr2:85980951..85981004,+!p1@ATOH8!0.64!5.94!ATOH8;;chr22:19748231..19748317,+!p1@TBX1!0.64!3.33!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.33!ZNF385D;;chr8:67525443..67525459,-!p2@MYBL1!0.63!5.21!MYBL1;;chr6:85473156..85473210,-!p2@TBX18!0.63!4.20!TBX18;;chr17:46622440..46622477,-!p5@HOXB2!0.63!3.76!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr2:119604456..119604501,-!p2@EN1!0.62!3.19!EN1;;chrX:85403445..85403479,+!p2@DACH2!0.62!3.19!DACH2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.61!262.78!TAX1BP3;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.33!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!0.61!3.04!HOXA9;;chr10:119303078..119303169,+!p2@EMX2!0.61!3.04!EMX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.79!ZNF804A;;chr1:8938709..8938720,-!p3@ENO1!0.59!173.74!ENO1;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.90!PKNOX2;;chr12:54332608..54332636,+!p1@HOXC13!0.59!2.90!HOXC13;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.90!PAX9;;chr3:141121871..141121885,+!p13@ZBTB38!0.59!2.90!ZBTB38;;chr2:191878874..191878938,-!p1@STAT1!0.58!188.07!STAT1;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.12!ZEB2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.19!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.28!TBX2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.92!PAWR;;chr4:26322373..26322393,+!p4@RBPJ!0.58!4.49!RBPJ;;chr11:12696071..12696086,+!p3@TEAD1!0.58!3.91!TEAD1;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.19!NR2F1;;chr5:139487608..139487663,+!p3@PURA!0.57!6.66!PURA;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.50!IKZF2;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.75!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.20!SATB2;;chr3:141121820..141121838,+!p9@ZBTB38!0.56!2.61!ZBTB38;;chr12:54394416..54394467,+!p5@HOXC9!0.56!2.61!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!0.56!2.61!TBX15;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.61!HOXA7;;chr17:46621146..46621180,-!p10@HOXB2!0.56!2.61!HOXB2;;chr10:31608127..31608156,+!p1@ZEB1!0.55!59.94!ZEB1;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.08!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.55!14.04!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.55!4.05!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.04!BNC1;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.33!STAT1;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.04!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.54!2.46!TBX3;;chr7:15725757..15725828,-!p5@MEOX2!0.54!2.46!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.54!2.46!MEOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.23!HOXB2;;chr16:54320158..54320200,-!p5@IRX3!0.53!3.76!IRX3;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.76!ZBTB16;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.90!ZNF438;;chr12:115121962..115121987,-!p1@TBX3!0.52!24.76!TBX3;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.34!ATOH8;;chr19:13134772..13134822,+!p2@NFIX!0.52!3.76!NFIX;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.62!MAF1;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.32!RFX8;;chr4:26322673..26322684,+!p11@RBPJ!0.52!2.32!RBPJ;;chr11:17741084..17741094,+!p3@MYOD1!0.52!2.32!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!0.52!2.32!HOXC10;;chr12:54422217..54422239,+!p3@HOXC6!0.52!2.32!HOXC6;;chr19:2867325..2867348,+!p1@ZNF556!0.52!2.32!ZNF556;;chr14:62162224..62162254,+!p1@HIF1A!0.51!433.04!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.50!4.05!MLLT11;;chr17:46622114..46622138,-!p4@HOXB2!0.50!3.76!HOXB2;;chr17:48072574..48072597,-!p1@DLX3!0.50!2.17!DLX3;;chr2:176994408..176994492,+!p1@HOXD8!0.50!2.17!HOXD8;;chr12:54332687..54332701,+!p3@HOXC13!0.50!2.17!HOXC13;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.17!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.50!2.17!HOXC9;;chr7:150946015..150946070,-!p3@SMARCD3!0.49!5.36!SMARCD3;;chr7:137686763..137686784,-!p5@CREB3L2!0.49!4.20!CREB3L2;;chr5:134369905..134369972,-!p1@PITX1!0.49!3.62!PITX1;;chr3:157823517..157823562,-!p1@SHOX2!0.49!2.32!SHOX2;;chr12:96588219..96588263,+!p2@ELK3!0.48!19.26!ELK3;;chr9:35732514..35732530,+!p5@CREB3!0.48!3.19!CREB3;;chr12:66357214..66357233,+!p13@HMGA2!0.48!2.03!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.48!2.03!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.48!2.03!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.48!2.03!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!0.48!2.03!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.48!2.03!ZNF385D;;chr1:170632683..170632696,+!p12@PRRX1!0.48!2.03!PRRX1;;chr20:30193083..30193098,+!p1@ID1!0.47!218.33!ID1;;chr18:32870260..32870293,+!p1@ZNF271!0.47!33.59!ZNF271;;chr17:46621937..46621966,-!p2@HOXB2!0.47!6.66!HOXB2;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.47!HMGA2;;chr16:54320617..54320643,-!p3@IRX3!0.47!2.75!IRX3;;chr12:124873357..124873401,-!p1@NCOR2!0.46!29.97!NCOR2;;chr12:96588279..96588299,+!p4@ELK3!0.46!11.87!ELK3;;chr1:211433275..211433335,+!p2@RCOR3!0.46!7.38!RCOR3;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.37!ELK3;;chr10:77161133..77161176,-!p3@ZNF503!0.46!4.92!ZNF503;;chr14:62203595..62203676,+!p4@HIF1A!0.46!4.20!HIF1A;;chr1:158985493..158985535,+!p4@IFI16!0.46!3.33!IFI16;;chr12:66218443..66218461,+!p8@HMGA2!0.46!2.61!HMGA2;;chr14:62164416..62164443,+!p27@HIF1A!0.46!1.88!HIF1A;;chr16:1429010..1429038,-!p5@UNKL!0.46!1.88!UNKL;;chr16:86600870..86600921,+!p2@FOXC2!0.46!1.88!FOXC2;;chr2:214014959..214015006,-!p4@IKZF2!0.46!1.88!IKZF2;;chr2:85980903..85980914,+!p11@ATOH8!0.46!1.88!ATOH8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| |expression_enrichment_score=chr12:81110684..81110700,+!p1@MYF5!2.38!241.21!MYF5;;chr11:65686802..65686818,+!p6@DRAP1!1.53!55.89!DRAP1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!32.58!HOXC5;;chr11:17741111..17741124,+!p1@MYOD1!1.49!29.82!MYOD1;;chr8:25902876..25902936,-!p1@EBF2!1.41!24.61!EBF2;;chr1:40105299..40105326,-!p1@HEYL!1.40!24.32!HEYL;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.38!22.73!ZBED1;;chr7:19157248..19157268,-!p1@TWIST1!1.26!46.91!TWIST1;;chr12:54402745..54402788,+!p1@HOXC8!1.22!15.78!HOXC8;;chr11:65687362..65687436,+!p3@DRAP1!1.20!67.32!DRAP1;;chr15:42749722..42749739,-!p2@ZFP106!1.19!25.63!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.18!16.07!PRRX1;;chr11:65686732..65686756,+!p2@DRAP1!1.17!57.62!DRAP1;;chr11:65687222..65687240,+!p7@DRAP1!1.17!17.66!DRAP1;;chr1:203055129..203055147,-!p1@MYOG!1.13!12.45!MYOG;;chr2:19558373..19558392,-!p1@OSR1!1.11!32.87!OSR1;;chr2:85981107..85981120,+!p3@ATOH8!1.08!11.15!ATOH8;;chr11:65687243..65687276,+!p8@DRAP1!1.06!14.19!DRAP1;;chr12:66218836..66218888,+!p1@HMGA2!1.03!91.50!HMGA2;;chr8:49833948..49833973,-!p2@SNAI2!1.02!60.95!SNAI2;;chr14:61116183..61116208,-!p1@SIX1!1.01!36.05!SIX1;;chr12:54393880..54393962,+!p1@HOXC9!1.01!9.12!HOXC9;;chr14:62162285..62162296,+!p3@HIF1A!1.00!47.34!HIF1A;;chr16:86600426..86600441,+!p1@FOXC2!1.00!22.59!FOXC2;;chr15:57511609..57511651,+!p2@TCF12!1.00!15.20!TCF12;;chr3:141121847..141121868,+!p5@ZBTB38!0.99!13.61!ZBTB38;;chr14:62162258..62162269,+!p2@HIF1A!0.98!83.97!HIF1A;;chr11:65667884..65667895,-!p2@FOSL1!0.98!34.02!FOSL1;;chr12:54378923..54378966,+!p1@HOXC10!0.97!8.25!HOXC10;;chr10:131762504..131762555,-!p1@EBF3!0.96!8.11!EBF3;;chr7:15726296..15726315,-!p1@MEOX2!0.96!8.11!MEOX2;;chr10:31607702..31607755,+!p3@ZEB1!0.93!8.69!ZEB1;;chr17:46682321..46682362,-!p1@HOXB6!0.93!7.53!HOXB6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.24!HOXC5;;chr12:66218923..66218934,+!p14@HMGA2!0.92!7.24!HMGA2;;chr2:85981073..85981091,+!p5@ATOH8!0.92!7.24!ATOH8;;chr11:46299199..46299233,+!p1@CREB3L1!0.91!38.66!CREB3L1;;chr1:170633262..170633285,+!p3@PRRX1!0.91!8.25!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.91!7.09!PRRX1;;chr12:66218904..66218913,+!p11@HMGA2!0.90!6.95!HMGA2;;chr12:66218598..66218645,+!p2@HMGA2!0.89!32.43!HMGA2;;chr4:111558135..111558198,-!p2@PITX2!0.88!6.52!PITX2;;chr19:47523058..47523114,+!p1@NPAS1!0.86!6.23!NPAS1;;chr11:46299539..46299620,+!p2@CREB3L1!0.85!10.71!CREB3L1;;chr12:66218255..66218304,+!p3@HMGA2!0.84!16.94!HMGA2;;chr11:17741254..17741282,+!p2@MYOD1!0.84!5.94!MYOD1;;chr9:35732647..35732678,+!p2@CREB3!0.83!34.60!CREB3;;chr8:49833978..49833996,-!p1@SNAI2!0.82!124.22!SNAI2;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.65!KLF17;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.50!SIX2;;chr1:170633348..170633399,+!p2@PRRX1!0.78!7.09!PRRX1;;chr2:239756671..239756732,+!p1@TWIST2!0.77!16.94!TWIST2;;chr4:26322267..26322334,+!p3@RBPJ!0.77!12.60!RBPJ;;chr2:85981027..85981047,+!p8@ATOH8!0.77!4.92!ATOH8;;chr11:65687158..65687216,+!p4@DRAP1!0.76!30.11!DRAP1;;chr21:36421535..36421610,-!p2@RUNX1!0.76!18.53!RUNX1;;chr2:85981008..85981025,+!p7@ATOH8!0.76!4.78!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.75!7.24!ENO1;;chr12:54380036..54380091,+!p4@HOXC10!0.75!4.63!HOXC10;;chr2:102091144..102091183,-!p2@RFX8!0.75!4.63!RFX8;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.07!PRRX1;;chr4:111544219..111544240,-!p1@PITX2!0.74!4.49!PITX2;;chr12:54380404..54380433,+!p3@HOXC10!0.74!4.49!HOXC10;;chr12:54402729..54402743,+!p3@HOXC8!0.72!4.20!HOXC8;;chr11:65667846..65667868,-!p1@FOSL1!0.71!124.80!FOSL1;;chr3:170076314..170076334,+!p2@SKIL!0.71!5.65!SKIL;;chr1:170632723..170632739,+!p8@PRRX1!0.70!4.05!PRRX1;;chr2:239756739..239756755,+!p2@TWIST2!0.69!7.09!TWIST2;;chr10:31610110..31610159,+!p2@ZEB1!0.69!3.91!ZEB1;;chr12:54402790..54402805,+!p2@HOXC8!0.69!3.91!HOXC8;;chr7:15726243..15726293,-!p2@MEOX2!0.69!3.91!MEOX2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.60!ZHX3;;chr7:27205106..27205134,-!p2@HOXA9!0.68!3.76!HOXA9;;chr10:31607811..31607837,+!p6@ZEB1!0.68!3.76!ZEB1;;chr12:54394309..54394336,+!p2@HOXC9!0.68!3.76!HOXC9;;chr2:119605214..119605230,-!p1@EN1!0.68!3.76!EN1;;chr11:65686952..65686975,+!p5@DRAP1!0.67!23.31!DRAP1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!17.66!ZBTB20;;chr1:170632250..170632277,+!p7@PRRX1!0.66!3.62!PRRX1;;chr7:19157043..19157088,-!p2@TWIST1!0.65!9.70!TWIST1;;chr17:46688334..46688385,-!p1@HOXB7!0.65!5.36!HOXB7;;chr17:46687959..46688007,-!p2@HOXB7!0.65!5.07!HOXB7;;chr4:26323870..26323885,+!p13@RBPJ!0.65!3.47!RBPJ;;chr1:23885981..23886002,-!p1@ID3!0.64!696.40!ID3;;chr12:53614115..53614154,-!p1@RARG!0.64!20.70!RARG;;chr2:85980951..85981004,+!p1@ATOH8!0.64!5.94!ATOH8;;chr22:19748231..19748317,+!p1@TBX1!0.64!3.33!TBX1;;chr3:21792682..21792720,-!p1@ZNF385D!0.64!3.33!ZNF385D;;chr8:67525443..67525459,-!p2@MYBL1!0.63!5.21!MYBL1;;chr6:85473156..85473210,-!p2@TBX18!0.63!4.20!TBX18;;chr17:46622440..46622477,-!p5@HOXB2!0.63!3.76!HOXB2;;chr3:21792585..21792625,-!p2@ZNF385D!0.62!3.62!ZNF385D;;chr2:119604456..119604501,-!p2@EN1!0.62!3.19!EN1;;chrX:85403445..85403479,+!p2@DACH2!0.62!3.19!DACH2;;chr17:3571863..3571881,-!p1@TAX1BP3!0.61!262.78!TAX1BP3;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.33!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!0.61!3.04!HOXA9;;chr10:119303078..119303169,+!p2@EMX2!0.61!3.04!EMX2;;chr2:185463247..185463263,+!p1@ZNF804A!0.60!5.79!ZNF804A;;chr1:8938709..8938720,-!p3@ENO1!0.59!173.74!ENO1;;chr11:125034640..125034655,+!p1@PKNOX2!0.59!2.90!PKNOX2;;chr12:54332608..54332636,+!p1@HOXC13!0.59!2.90!HOXC13;;chr14:37131058..37131139,+!p1@PAX9!0.59!2.90!PAX9;;chr3:141121871..141121885,+!p13@ZBTB38!0.59!2.90!ZBTB38;;chr2:191878874..191878938,-!p1@STAT1!0.58!188.07!STAT1;;chr2:145275162..145275202,-!p2@ZEB2!0.58!20.12!ZEB2;;chr8:77593474..77593612,+!p1@ZFHX4!0.58!14.19!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.28!TBX2;;chr12:80085061..80085119,-!p6@PAWR!0.58!4.92!PAWR;;chr4:26322373..26322393,+!p4@RBPJ!0.58!4.49!RBPJ;;chr11:12696071..12696086,+!p3@TEAD1!0.58!3.91!TEAD1;;chr5:92918956..92918969,+!p4@NR2F1!0.58!3.19!NR2F1;;chr5:139487608..139487663,+!p3@PURA!0.57!6.66!PURA;;chr2:214015111..214015179,-!p1@IKZF2!0.57!5.50!IKZF2;;chr1:170632477..170632506,+!p6@PRRX1!0.57!2.75!PRRX1;;chr12:66218183..66218209,+!p4@HMGA2!0.56!5.79!HMGA2;;chr2:200322654..200322707,-!p2@SATB2!0.56!4.20!SATB2;;chr3:141121820..141121838,+!p9@ZBTB38!0.56!2.61!ZBTB38;;chr12:54394416..54394467,+!p5@HOXC9!0.56!2.61!HOXC9;;chr1:119530493..119530572,-!p1@TBX15!0.56!2.61!TBX15;;chr7:27196267..27196311,-!p1@HOXA7!0.56!2.61!HOXA7;;chr17:46621146..46621180,-!p10@HOXB2!0.56!2.61!HOXB2;;chr10:31608127..31608156,+!p1@ZEB1!0.55!59.94!ZEB1;;chr1:151032860..151032918,+!p1@MLLT11!0.55!38.08!MLLT11;;chr5:92918919..92918942,+!p1@NR2F1!0.55!14.04!NR2F1;;chr12:66218212..66218244,+!p5@HMGA2!0.55!4.05!HMGA2;;chr15:83953397..83953425,-!p1@BNC1!0.55!3.04!BNC1;;chr5:72744445..72744466,-!p2@FOXD1!0.54!4.63!FOXD1;;chr2:191878812..191878823,-!p2@STAT1!0.54!3.33!STAT1;;chr11:65686776..65686787,+!p9@DRAP1!0.54!3.04!DRAP1;;chr12:115121802..115121814,-!p5@TBX3!0.54!2.46!TBX3;;chr7:15725757..15725828,-!p5@MEOX2!0.54!2.46!MEOX2;;chr7:15725992..15726043,-!p7@MEOX2!0.54!2.46!MEOX2;;chr17:46622070..46622109,-!p1@HOXB2!0.53!6.23!HOXB2;;chr16:54320158..54320200,-!p5@IRX3!0.53!3.76!IRX3;;chr11:113930425..113930471,+!p1@ZBTB16!0.53!3.76!ZBTB16;;chr10:31288398..31288455,-!p2@ZNF438!0.53!2.90!ZNF438;;chr12:115121962..115121987,-!p1@TBX3!0.52!24.76!TBX3;;chr2:85981222..85981259,+!p2@ATOH8!0.52!4.34!ATOH8;;chr19:13134772..13134822,+!p2@NFIX!0.52!3.76!NFIX;;chr8:145159846..145159889,+!p6@MAF1!0.52!3.62!MAF1;;chr2:102091566..102091581,-!p1@RFX8!0.52!2.32!RFX8;;chr4:26322673..26322684,+!p11@RBPJ!0.52!2.32!RBPJ;;chr11:17741084..17741094,+!p3@MYOD1!0.52!2.32!MYOD1;;chr12:54379029..54379057,+!p2@HOXC10!0.52!2.32!HOXC10;;chr12:54422217..54422239,+!p3@HOXC6!0.52!2.32!HOXC6;;chr19:2867325..2867348,+!p1@ZNF556!0.52!2.32!ZNF556;;chr14:62162224..62162254,+!p1@HIF1A!0.51!433.04!HIF1A;;chr1:151032922..151032951,+!p2@MLLT11!0.50!4.05!MLLT11;;chr17:46622114..46622138,-!p4@HOXB2!0.50!3.76!HOXB2;;chr17:48072574..48072597,-!p1@DLX3!0.50!2.17!DLX3;;chr2:176994408..176994492,+!p1@HOXD8!0.50!2.17!HOXD8;;chr12:54332687..54332701,+!p3@HOXC13!0.50!2.17!HOXC13;;chr12:54380112..54380126,+!p5@HOXC10!0.50!2.17!HOXC10;;chr12:54394059..54394088,+!p3@HOXC9!0.50!2.17!HOXC9;;chr7:150946015..150946070,-!p3@SMARCD3!0.49!5.36!SMARCD3;;chr7:137686763..137686784,-!p5@CREB3L2!0.49!4.20!CREB3L2;;chr5:134369905..134369972,-!p1@PITX1!0.49!3.62!PITX1;;chr3:157823517..157823562,-!p1@SHOX2!0.49!2.32!SHOX2;;chr12:96588219..96588263,+!p2@ELK3!0.48!19.26!ELK3;;chr9:35732514..35732530,+!p5@CREB3!0.48!3.19!CREB3;;chr12:66357214..66357233,+!p13@HMGA2!0.48!2.03!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.48!2.03!HMGA2;;chr16:31076332..31076388,-!p3@ZNF668!0.48!2.03!ZNF668;;chr16:86600458..86600461,+!p3@FOXC2!0.48!2.03!FOXC2;;chr3:147127142..147127168,+!p1@ZIC1!0.48!2.03!ZIC1;;chr3:21792631..21792665,-!p3@ZNF385D!0.48!2.03!ZNF385D;;chr1:170632683..170632696,+!p12@PRRX1!0.48!2.03!PRRX1;;chr20:30193083..30193098,+!p1@ID1!0.47!218.33!ID1;;chr18:32870260..32870293,+!p1@ZNF271!0.47!33.59!ZNF271;;chr17:46621937..46621966,-!p2@HOXB2!0.47!6.66!HOXB2;;chr12:66218378..66218401,+!p6@HMGA2!0.47!3.47!HMGA2;;chr16:54320617..54320643,-!p3@IRX3!0.47!2.75!IRX3;;chr12:124873357..124873401,-!p1@NCOR2!0.46!29.97!NCOR2;;chr12:96588279..96588299,+!p4@ELK3!0.46!11.87!ELK3;;chr1:211433275..211433335,+!p2@RCOR3!0.46!7.38!RCOR3;;chr12:96588368..96588394,+!p3@ELK3!0.46!6.37!ELK3;;chr10:77161133..77161176,-!p3@ZNF503!0.46!4.92!ZNF503;;chr14:62203595..62203676,+!p4@HIF1A!0.46!4.20!HIF1A;;chr1:158985493..158985535,+!p4@IFI16!0.46!3.33!IFI16;;chr12:66218443..66218461,+!p8@HMGA2!0.46!2.61!HMGA2;;chr14:62164416..62164443,+!p27@HIF1A!0.46!1.88!HIF1A;;chr16:1429010..1429038,-!p5@UNKL!0.46!1.88!UNKL;;chr16:86600870..86600921,+!p2@FOXC2!0.46!1.88!FOXC2;;chr2:214014959..214015006,-!p4@IKZF2!0.46!1.88!IKZF2;;chr2:85980903..85980914,+!p11@ATOH8!0.46!1.88!ATOH8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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000056;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000515;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002385 | |||
|ffid_belonging_in_development=CL:0000355,CL:0000222,CL:0000515 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Myoblast%252c%2520donor1.CNhs10870.11241-116D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11241-116D8 | |id=FF:11241-116D8 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000164 | ||
|is_obsolete= | |||
|library_id=CNhs10870 | |||
|library_id_phase_based=2:CNhs10870 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11241 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10009.ATGTCA.11241 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11241 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10009.ATGTCA.11241 | |||
|name=Myoblast, donor1 | |name=Myoblast, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10870,LSID703,release008,COMPLETED | |profile_hcage=CNhs10870,LSID703,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10009,,, | |profile_srnaseq=SRhi10009,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=116 | |rna_box=116 | ||
|rna_catalog_number=SC3525 | |rna_catalog_number=SC3525 | ||
| Line 56: | Line 82: | ||
|rna_tube_id=116D8 | |rna_tube_id=116D8 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10009.ATGTCA | |||
|sample_age=58 | |sample_age=58 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.26272517261519e-221!GO:0005737;cytoplasm;2.67995620622269e-200!GO:0043226;organelle;8.15790893108145e-176!GO:0043229;intracellular organelle;1.80003801654487e-175!GO:0043231;intracellular membrane-bound organelle;4.76211611467183e-166!GO:0043227;membrane-bound organelle;8.46561700096792e-166!GO:0044444;cytoplasmic part;2.3311473279349e-154!GO:0044422;organelle part;1.78078935294006e-142!GO:0044446;intracellular organelle part;6.46239971545456e-141!GO:0032991;macromolecular complex;4.05877565467182e-99!GO:0030529;ribonucleoprotein complex;1.3111003843482e-83!GO:0005515;protein binding;4.24189321331353e-79!GO:0044238;primary metabolic process;5.29937153942093e-72!GO:0044237;cellular metabolic process;1.05640905487172e-71!GO:0043233;organelle lumen;4.72074759682542e-69!GO:0031974;membrane-enclosed lumen;4.72074759682542e-69!GO:0005739;mitochondrion;1.18836893376966e-67!GO:0043170;macromolecule metabolic process;1.03764360490367e-64!GO:0044428;nuclear part;3.23765888353223e-63!GO:0003723;RNA binding;1.09802672003417e-62!GO:0031090;organelle membrane;2.13589157132321e-55!GO:0005634;nucleus;3.88720609870173e-52!GO:0005840;ribosome;2.30389384702437e-51!GO:0043234;protein complex;1.60274474461674e-50!GO:0019538;protein metabolic process;9.7173676238669e-48!GO:0044429;mitochondrial part;1.23355993452308e-46!GO:0006412;translation;1.24891346851638e-46!GO:0016043;cellular component organization and biogenesis;3.91751609963312e-46!GO:0003735;structural constituent of ribosome;1.05611836290135e-44!GO:0015031;protein transport;2.26155244176986e-44!GO:0006396;RNA processing;1.20942951862756e-43!GO:0033036;macromolecule localization;1.539596063831e-43!GO:0009058;biosynthetic process;1.24910928172712e-42!GO:0044260;cellular macromolecule metabolic process;7.90553849249118e-42!GO:0031967;organelle envelope;1.03587852399005e-41!GO:0031975;envelope;2.70736134058591e-41!GO:0045184;establishment of protein localization;3.00357259591247e-41!GO:0044267;cellular protein metabolic process;3.44450408312793e-41!GO:0008104;protein localization;1.76234592355439e-40!GO:0005829;cytosol;1.06594017244934e-39!GO:0009059;macromolecule biosynthetic process;1.39718657835354e-38!GO:0031981;nuclear lumen;1.47887875542565e-38!GO:0033279;ribosomal subunit;2.55271115841099e-38!GO:0044249;cellular biosynthetic process;3.53605630473987e-38!GO:0046907;intracellular transport;3.55021047117062e-36!GO:0043228;non-membrane-bound organelle;2.27248414412697e-33!GO:0043232;intracellular non-membrane-bound organelle;2.27248414412697e-33!GO:0016071;mRNA metabolic process;2.49595461658029e-33!GO:0008380;RNA splicing;2.82900056105515e-32!GO:0005740;mitochondrial envelope;1.71448489014592e-31!GO:0043283;biopolymer metabolic process;9.31109260121181e-31!GO:0031966;mitochondrial membrane;9.74431885859082e-30!GO:0006397;mRNA processing;2.08413287848104e-29!GO:0010467;gene expression;3.99950709407658e-29!GO:0006886;intracellular protein transport;4.60868433493717e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.13734365024729e-28!GO:0006996;organelle organization and biogenesis;3.42987310263606e-28!GO:0019866;organelle inner membrane;3.81690448984157e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.13287772768256e-27!GO:0005743;mitochondrial inner membrane;7.53831194643458e-27!GO:0065003;macromolecular complex assembly;9.89081628945969e-27!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.3209686194124e-25!GO:0022607;cellular component assembly;4.60309444897212e-25!GO:0005783;endoplasmic reticulum;2.60252857763894e-23!GO:0006457;protein folding;2.60252857763894e-23!GO:0012505;endomembrane system;3.53126153536059e-23!GO:0051641;cellular localization;3.56489101722662e-23!GO:0051649;establishment of cellular localization;3.79844070622838e-23!GO:0006119;oxidative phosphorylation;5.23411477525892e-23!GO:0005681;spliceosome;8.4876087350851e-23!GO:0044445;cytosolic part;2.36380502167217e-22!GO:0005654;nucleoplasm;3.98496005582975e-22!GO:0044455;mitochondrial membrane part;2.57202487811651e-21!GO:0015934;large ribosomal subunit;6.20386654893639e-20!GO:0005794;Golgi apparatus;8.34206410014729e-20!GO:0015935;small ribosomal subunit;3.00647017281446e-19!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.44272708718079e-19!GO:0016462;pyrophosphatase activity;4.08789516333867e-19!GO:0016817;hydrolase activity, acting on acid anhydrides;5.46479355579883e-19!GO:0017111;nucleoside-triphosphatase activity;1.18247235743815e-18!GO:0044432;endoplasmic reticulum part;1.21520210687126e-18!GO:0005730;nucleolus;3.08202681391522e-18!GO:0031980;mitochondrial lumen;5.26380272115183e-18!GO:0005759;mitochondrial matrix;5.26380272115183e-18!GO:0000166;nucleotide binding;6.84756227084478e-18!GO:0044451;nucleoplasm part;9.68356343188725e-18!GO:0048770;pigment granule;1.18191912975007e-17!GO:0042470;melanosome;1.18191912975007e-17!GO:0005746;mitochondrial respiratory chain;1.4885002320897e-17!GO:0006259;DNA metabolic process;3.79928316415946e-17!GO:0051186;cofactor metabolic process;4.97045833963921e-17!GO:0006512;ubiquitin cycle;7.68485797999041e-17!GO:0022618;protein-RNA complex assembly;1.34426942141359e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.54843805331232e-16!GO:0016874;ligase activity;2.83179914543371e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.63497029648237e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.15571722830325e-16!GO:0044265;cellular macromolecule catabolic process;9.76720755621809e-16!GO:0019941;modification-dependent protein catabolic process;1.68196337060046e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.68196337060046e-15!GO:0044257;cellular protein catabolic process;2.12988863882486e-15!GO:0007049;cell cycle;4.02077608875346e-15!GO:0006511;ubiquitin-dependent protein catabolic process;4.10355807272629e-15!GO:0050136;NADH dehydrogenase (quinone) activity;5.96130674650537e-15!GO:0003954;NADH dehydrogenase activity;5.96130674650537e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.96130674650537e-15!GO:0005761;mitochondrial ribosome;6.67509927734655e-15!GO:0000313;organellar ribosome;6.67509927734655e-15!GO:0043285;biopolymer catabolic process;8.24118847346432e-15!GO:0008135;translation factor activity, nucleic acid binding;1.17211403702194e-14!GO:0051082;unfolded protein binding;1.41611316238707e-14!GO:0048193;Golgi vesicle transport;1.72901100626722e-14!GO:0006605;protein targeting;3.60669958820089e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);4.05750694043264e-14!GO:0044248;cellular catabolic process;8.2768064811226e-14!GO:0009057;macromolecule catabolic process;8.57307084891323e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.03519034914419e-13!GO:0030163;protein catabolic process;1.60817785862883e-13!GO:0016192;vesicle-mediated transport;1.68445913637351e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.17166561957658e-13!GO:0042773;ATP synthesis coupled electron transport;2.17166561957658e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.8691439292254e-13!GO:0045271;respiratory chain complex I;2.8691439292254e-13!GO:0005747;mitochondrial respiratory chain complex I;2.8691439292254e-13!GO:0006732;coenzyme metabolic process;4.82397565632315e-13!GO:0005793;ER-Golgi intermediate compartment;6.40086475545825e-13!GO:0042254;ribosome biogenesis and assembly;6.92754581345048e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.22717222526171e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.38641478147668e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.17248552403484e-12!GO:0003676;nucleic acid binding;1.26538537633307e-12!GO:0008134;transcription factor binding;1.50395159719139e-12!GO:0017076;purine nucleotide binding;1.57545426613208e-12!GO:0009259;ribonucleotide metabolic process;2.23896738980853e-12!GO:0032553;ribonucleotide binding;2.26970302178024e-12!GO:0032555;purine ribonucleotide binding;2.26970302178024e-12!GO:0005789;endoplasmic reticulum membrane;3.94175433887009e-12!GO:0009055;electron carrier activity;5.87425477193929e-12!GO:0000278;mitotic cell cycle;7.9388721195458e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;8.77637616989907e-12!GO:0000375;RNA splicing, via transesterification reactions;8.77637616989907e-12!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.77637616989907e-12!GO:0022402;cell cycle process;1.06334746621046e-11!GO:0006163;purine nucleotide metabolic process;1.15368575104487e-11!GO:0006974;response to DNA damage stimulus;1.37055286749948e-11!GO:0009150;purine ribonucleotide metabolic process;2.02265994427544e-11!GO:0003743;translation initiation factor activity;2.26747258112083e-11!GO:0043412;biopolymer modification;2.36453200705045e-11!GO:0005635;nuclear envelope;3.33790007711318e-11!GO:0031965;nuclear membrane;7.98940373719605e-11!GO:0009199;ribonucleoside triphosphate metabolic process;1.07203940220603e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.35516312178329e-10!GO:0006413;translational initiation;1.39698057511473e-10!GO:0009260;ribonucleotide biosynthetic process;1.41942618410485e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.19086461216957e-10!GO:0009144;purine nucleoside triphosphate metabolic process;2.19086461216957e-10!GO:0006164;purine nucleotide biosynthetic process;2.24346805907561e-10!GO:0009141;nucleoside triphosphate metabolic process;2.24828827455773e-10!GO:0006464;protein modification process;2.3544350270085e-10!GO:0005524;ATP binding;2.38685061743273e-10!GO:0009152;purine ribonucleotide biosynthetic process;3.83899931579861e-10!GO:0008639;small protein conjugating enzyme activity;4.10463247635065e-10!GO:0030554;adenyl nucleotide binding;4.32197730339454e-10!GO:0032559;adenyl ribonucleotide binding;4.487573881881e-10!GO:0019787;small conjugating protein ligase activity;4.98870169419974e-10!GO:0042623;ATPase activity, coupled;5.4775374068693e-10!GO:0004842;ubiquitin-protein ligase activity;7.93438117880218e-10!GO:0005788;endoplasmic reticulum lumen;8.3413874663532e-10!GO:0016604;nuclear body;8.43268811797668e-10!GO:0016070;RNA metabolic process;9.56959258707361e-10!GO:0016887;ATPase activity;1.06625024479503e-09!GO:0044453;nuclear membrane part;1.15247727069351e-09!GO:0006446;regulation of translational initiation;1.55267717847829e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.61126585573397e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.6208250277372e-09!GO:0008565;protein transporter activity;1.83199055194115e-09!GO:0006281;DNA repair;2.06663843395994e-09!GO:0012501;programmed cell death;2.41580370127341e-09!GO:0006888;ER to Golgi vesicle-mediated transport;3.91008567922729e-09!GO:0046034;ATP metabolic process;3.99572663068839e-09!GO:0044431;Golgi apparatus part;4.1710729601445e-09!GO:0016881;acid-amino acid ligase activity;4.30924169110745e-09!GO:0009142;nucleoside triphosphate biosynthetic process;4.55198154338444e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.55198154338444e-09!GO:0006915;apoptosis;6.10895907553403e-09!GO:0015986;ATP synthesis coupled proton transport;6.91672150220604e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.91672150220604e-09!GO:0015078;hydrogen ion transmembrane transporter activity;9.15656879368646e-09!GO:0006399;tRNA metabolic process;9.16367738227254e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;9.19289762976239e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;9.19289762976239e-09!GO:0009060;aerobic respiration;1.13368476664127e-08!GO:0019829;cation-transporting ATPase activity;1.26052522642969e-08!GO:0009719;response to endogenous stimulus;1.33206523211739e-08!GO:0000087;M phase of mitotic cell cycle;1.35173284138899e-08!GO:0005768;endosome;1.37791793686624e-08!GO:0007067;mitosis;1.93381920587763e-08!GO:0006461;protein complex assembly;2.34739139174358e-08!GO:0051188;cofactor biosynthetic process;2.4946384956247e-08!GO:0030120;vesicle coat;2.6444977870304e-08!GO:0030662;coated vesicle membrane;2.6444977870304e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;2.70239114982282e-08!GO:0006913;nucleocytoplasmic transport;3.21023615881041e-08!GO:0006364;rRNA processing;3.63023133367746e-08!GO:0003712;transcription cofactor activity;3.67148163324067e-08!GO:0008219;cell death;3.91622090002824e-08!GO:0016265;death;3.91622090002824e-08!GO:0045333;cellular respiration;4.01737773799222e-08!GO:0043687;post-translational protein modification;4.53241539538811e-08!GO:0007005;mitochondrion organization and biogenesis;4.70655594773608e-08!GO:0048523;negative regulation of cellular process;5.10957669677929e-08!GO:0016607;nuclear speck;5.54270312837325e-08!GO:0051169;nuclear transport;6.29260310334611e-08!GO:0016072;rRNA metabolic process;6.52071883769385e-08!GO:0000074;regulation of progression through cell cycle;7.57649268387311e-08!GO:0048475;coated membrane;7.68464755546705e-08!GO:0030117;membrane coat;7.68464755546705e-08!GO:0009056;catabolic process;7.89337351113088e-08!GO:0051726;regulation of cell cycle;8.48903242669899e-08!GO:0006260;DNA replication;9.96820913955742e-08!GO:0005643;nuclear pore;1.05025708079156e-07!GO:0016491;oxidoreductase activity;1.31453656534356e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.31748181252637e-07!GO:0065002;intracellular protein transport across a membrane;1.38687359657525e-07!GO:0022403;cell cycle phase;1.45150831044298e-07!GO:0006754;ATP biosynthetic process;1.6370859610411e-07!GO:0006753;nucleoside phosphate metabolic process;1.6370859610411e-07!GO:0003924;GTPase activity;2.12532223004528e-07!GO:0004386;helicase activity;2.15080480012586e-07!GO:0016853;isomerase activity;2.26119747820561e-07!GO:0006099;tricarboxylic acid cycle;2.26119747820561e-07!GO:0046356;acetyl-CoA catabolic process;2.26119747820561e-07!GO:0051187;cofactor catabolic process;2.74290382467537e-07!GO:0008092;cytoskeletal protein binding;3.17060071975347e-07!GO:0017038;protein import;3.22698462374509e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.04977619992866e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.04977619992866e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.04977619992866e-07!GO:0000139;Golgi membrane;4.18779533453887e-07!GO:0009117;nucleotide metabolic process;4.48729413885002e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.61355009410014e-07!GO:0051246;regulation of protein metabolic process;5.22277513893605e-07!GO:0043038;amino acid activation;5.36330181651343e-07!GO:0006418;tRNA aminoacylation for protein translation;5.36330181651343e-07!GO:0043039;tRNA aminoacylation;5.36330181651343e-07!GO:0009109;coenzyme catabolic process;5.62006202929774e-07!GO:0005694;chromosome;6.74919073091738e-07!GO:0051301;cell division;6.8979029062151e-07!GO:0006084;acetyl-CoA metabolic process;8.38414368763786e-07!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;8.95351155470982e-07!GO:0008026;ATP-dependent helicase activity;9.1715236016494e-07!GO:0048519;negative regulation of biological process;1.07232462508488e-06!GO:0016859;cis-trans isomerase activity;1.0937971021738e-06!GO:0009108;coenzyme biosynthetic process;1.12772371481807e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.45943630499585e-06!GO:0006752;group transfer coenzyme metabolic process;1.74632071434426e-06!GO:0015630;microtubule cytoskeleton;1.91172946769133e-06!GO:0046930;pore complex;1.94322372066033e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.37080580167852e-06!GO:0003697;single-stranded DNA binding;2.66116610612143e-06!GO:0006403;RNA localization;2.76455733045044e-06!GO:0006916;anti-apoptosis;2.83073654293527e-06!GO:0005798;Golgi-associated vesicle;2.92086742290717e-06!GO:0050657;nucleic acid transport;3.1349534809654e-06!GO:0051236;establishment of RNA localization;3.1349534809654e-06!GO:0050658;RNA transport;3.1349534809654e-06!GO:0045259;proton-transporting ATP synthase complex;3.13799840813822e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;3.21548341738277e-06!GO:0043069;negative regulation of programmed cell death;4.02927386113116e-06!GO:0031988;membrane-bound vesicle;4.12373780524122e-06!GO:0008654;phospholipid biosynthetic process;4.4631669575189e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.54224713927344e-06!GO:0006613;cotranslational protein targeting to membrane;5.46736560706898e-06!GO:0032446;protein modification by small protein conjugation;6.0677803608644e-06!GO:0043566;structure-specific DNA binding;6.14214672599106e-06!GO:0016567;protein ubiquitination;6.40509717731772e-06!GO:0045454;cell redox homeostasis;6.40509717731772e-06!GO:0005773;vacuole;7.04153970641733e-06!GO:0043066;negative regulation of apoptosis;7.18228211906186e-06!GO:0031252;leading edge;7.22782294157131e-06!GO:0006091;generation of precursor metabolites and energy;8.12632101719934e-06!GO:0051276;chromosome organization and biogenesis;8.31409242686085e-06!GO:0044440;endosomal part;8.31756576802758e-06!GO:0010008;endosome membrane;8.31756576802758e-06!GO:0000151;ubiquitin ligase complex;8.56631368770554e-06!GO:0016740;transferase activity;9.32715831772638e-06!GO:0016779;nucleotidyltransferase activity;1.03830313596198e-05!GO:0005769;early endosome;1.04401081914579e-05!GO:0044427;chromosomal part;1.30898124828296e-05!GO:0000245;spliceosome assembly;1.36115323793043e-05!GO:0004298;threonine endopeptidase activity;1.40120524276439e-05!GO:0006366;transcription from RNA polymerase II promoter;1.44157401214346e-05!GO:0042981;regulation of apoptosis;1.51336989080578e-05!GO:0007010;cytoskeleton organization and biogenesis;1.52791751225814e-05!GO:0043067;regulation of programmed cell death;1.52791751225814e-05!GO:0065004;protein-DNA complex assembly;1.5487010423798e-05!GO:0005762;mitochondrial large ribosomal subunit;1.62481751522422e-05!GO:0000315;organellar large ribosomal subunit;1.62481751522422e-05!GO:0005770;late endosome;1.75018467875599e-05!GO:0031982;vesicle;1.92898916113564e-05!GO:0000279;M phase;1.95855340244844e-05!GO:0031968;organelle outer membrane;2.18656493225681e-05!GO:0019867;outer membrane;2.25081307962639e-05!GO:0051789;response to protein stimulus;2.25081307962639e-05!GO:0006986;response to unfolded protein;2.25081307962639e-05!GO:0031410;cytoplasmic vesicle;2.31735319869702e-05!GO:0016787;hydrolase activity;2.33737201352338e-05!GO:0030867;rough endoplasmic reticulum membrane;2.45188734418912e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;2.59490937438102e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.74578175855371e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.90567705329114e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.11782596113765e-05!GO:0005667;transcription factor complex;3.34303650352593e-05!GO:0003714;transcription corepressor activity;4.0275981987341e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.43027404492732e-05!GO:0030036;actin cytoskeleton organization and biogenesis;4.61850122461997e-05!GO:0030029;actin filament-based process;5.06835460533769e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.54783309962231e-05!GO:0006323;DNA packaging;5.78105028420768e-05!GO:0050794;regulation of cellular process;5.86977730831127e-05!GO:0000323;lytic vacuole;5.99184882563975e-05!GO:0005764;lysosome;5.99184882563975e-05!GO:0005813;centrosome;6.50231706954769e-05!GO:0030133;transport vesicle;6.94497927512016e-05!GO:0051028;mRNA transport;7.07056968733709e-05!GO:0051170;nuclear import;7.90251086081845e-05!GO:0033116;ER-Golgi intermediate compartment membrane;8.2127797298291e-05!GO:0043623;cellular protein complex assembly;8.24459120427349e-05!GO:0005791;rough endoplasmic reticulum;8.68190734225756e-05!GO:0003724;RNA helicase activity;9.02707465465354e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.72497082901161e-05!GO:0045786;negative regulation of progression through cell cycle;0.000102682875969894!GO:0005525;GTP binding;0.000110122158886121!GO:0005741;mitochondrial outer membrane;0.0001105790714664!GO:0006612;protein targeting to membrane;0.000115161187190834!GO:0008361;regulation of cell size;0.000115454277395856!GO:0046474;glycerophospholipid biosynthetic process;0.000115797127942748!GO:0000314;organellar small ribosomal subunit;0.000115797127942748!GO:0005763;mitochondrial small ribosomal subunit;0.000115797127942748!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000118242817267856!GO:0043021;ribonucleoprotein binding;0.000118889200303124!GO:0005048;signal sequence binding;0.000135027332883697!GO:0031324;negative regulation of cellular metabolic process;0.000150075920544714!GO:0006606;protein import into nucleus;0.000170514831137467!GO:0016049;cell growth;0.000171068183971239!GO:0005815;microtubule organizing center;0.000172551104788273!GO:0051427;hormone receptor binding;0.000186650254261745!GO:0006839;mitochondrial transport;0.000190152336345321!GO:0005905;coated pit;0.000212087583199828!GO:0009165;nucleotide biosynthetic process;0.000230092339427411!GO:0005885;Arp2/3 protein complex;0.000243231580330352!GO:0044262;cellular carbohydrate metabolic process;0.000260487311469429!GO:0004576;oligosaccharyl transferase activity;0.000261113375446408!GO:0051329;interphase of mitotic cell cycle;0.000287716251597916!GO:0008250;oligosaccharyl transferase complex;0.00031214379708744!GO:0030663;COPI coated vesicle membrane;0.000353479463985705!GO:0030126;COPI vesicle coat;0.000353479463985705!GO:0006333;chromatin assembly or disassembly;0.000364148650402819!GO:0035257;nuclear hormone receptor binding;0.000376730145924382!GO:0043681;protein import into mitochondrion;0.00037768647459858!GO:0016564;transcription repressor activity;0.000390250892292651!GO:0051325;interphase;0.00040174561310511!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000413086032674051!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000448636820030235!GO:0003899;DNA-directed RNA polymerase activity;0.0004541845694061!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00045438130430429!GO:0050789;regulation of biological process;0.00045582022724038!GO:0005819;spindle;0.000458225385441276!GO:0046467;membrane lipid biosynthetic process;0.000490216978803991!GO:0003779;actin binding;0.000490341064053568!GO:0006626;protein targeting to mitochondrion;0.000505203192994588!GO:0001558;regulation of cell growth;0.000550421004375801!GO:0003713;transcription coactivator activity;0.000554535285759929!GO:0009892;negative regulation of metabolic process;0.00057574491858175!GO:0006793;phosphorus metabolic process;0.000607577509387393!GO:0006796;phosphate metabolic process;0.000607577509387393!GO:0046489;phosphoinositide biosynthetic process;0.000626821724771901!GO:0018196;peptidyl-asparagine modification;0.000702190919694528!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000702190919694528!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000738479841220973!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00076624993008387!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000806252101707129!GO:0015399;primary active transmembrane transporter activity;0.000806252101707129!GO:0051920;peroxiredoxin activity;0.00081200758865906!GO:0042802;identical protein binding;0.000883255430215697!GO:0032561;guanyl ribonucleotide binding;0.000928755103650953!GO:0019001;guanyl nucleotide binding;0.000928755103650953!GO:0006891;intra-Golgi vesicle-mediated transport;0.000935027974564112!GO:0044452;nucleolar part;0.00105443412975466!GO:0030137;COPI-coated vesicle;0.00108048276623935!GO:0019843;rRNA binding;0.00108088976166964!GO:0022890;inorganic cation transmembrane transporter activity;0.00109823864185606!GO:0007006;mitochondrial membrane organization and biogenesis;0.00114552445632206!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00116982560343559!GO:0016310;phosphorylation;0.00117666765137598!GO:0006414;translational elongation;0.00120816464982045!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00126652827251829!GO:0006261;DNA-dependent DNA replication;0.00127864137559903!GO:0016044;membrane organization and biogenesis;0.00129183714682941!GO:0031072;heat shock protein binding;0.00135285273786156!GO:0016568;chromatin modification;0.00141731898335442!GO:0006334;nucleosome assembly;0.00143293768093664!GO:0019899;enzyme binding;0.00144346911757185!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00144346911757185!GO:0048471;perinuclear region of cytoplasm;0.00145190031870115!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00148817092682945!GO:0015002;heme-copper terminal oxidase activity;0.00148817092682945!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00148817092682945!GO:0004129;cytochrome-c oxidase activity;0.00148817092682945!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00149979728871668!GO:0051252;regulation of RNA metabolic process;0.00152309043281819!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00152774554000264!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00152774554000264!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00152774554000264!GO:0030176;integral to endoplasmic reticulum membrane;0.00153005807747504!GO:0048500;signal recognition particle;0.0015512564257846!GO:0046483;heterocycle metabolic process;0.0015828573450988!GO:0000785;chromatin;0.0016219396737314!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00170810393755816!GO:0006383;transcription from RNA polymerase III promoter;0.00186740806693928!GO:0000075;cell cycle checkpoint;0.00189301738075896!GO:0007051;spindle organization and biogenesis;0.00191320075807294!GO:0008610;lipid biosynthetic process;0.00192857393207682!GO:0003729;mRNA binding;0.00196534687938678!GO:0030658;transport vesicle membrane;0.00200320161907213!GO:0030132;clathrin coat of coated pit;0.00203224329312454!GO:0008186;RNA-dependent ATPase activity;0.00217487417033163!GO:0016563;transcription activator activity;0.00234394445603417!GO:0016363;nuclear matrix;0.00245981655376374!GO:0043284;biopolymer biosynthetic process;0.0025031328043584!GO:0007050;cell cycle arrest;0.00252612040268029!GO:0006979;response to oxidative stress;0.00253158640062095!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0026330790078332!GO:0015992;proton transport;0.00264065696691778!GO:0015629;actin cytoskeleton;0.00306439841693229!GO:0000059;protein import into nucleus, docking;0.00317825846180896!GO:0001726;ruffle;0.00327704077449583!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00343436109042023!GO:0045047;protein targeting to ER;0.00343436109042023!GO:0008139;nuclear localization sequence binding;0.00344111099604864!GO:0006818;hydrogen transport;0.00344111099604864!GO:0006950;response to stress;0.00366708710824153!GO:0030118;clathrin coat;0.00371351579886008!GO:0016197;endosome transport;0.00371351579886008!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00381332996063523!GO:0031497;chromatin assembly;0.00386780527012916!GO:0008180;signalosome;0.00392963254734411!GO:0051087;chaperone binding;0.00419137085124371!GO:0008312;7S RNA binding;0.00424509345946602!GO:0008033;tRNA processing;0.00424509345946602!GO:0043492;ATPase activity, coupled to movement of substances;0.00430499465125422!GO:0006650;glycerophospholipid metabolic process;0.00441246051078672!GO:0035258;steroid hormone receptor binding;0.00451227587778217!GO:0048487;beta-tubulin binding;0.00463326192045316!GO:0051168;nuclear export;0.00473561376644099!GO:0001952;regulation of cell-matrix adhesion;0.00482254957843829!GO:0065009;regulation of a molecular function;0.0048953593758395!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00489571460353159!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00503294823878923!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00503294823878923!GO:0051540;metal cluster binding;0.0050785549891638!GO:0051536;iron-sulfur cluster binding;0.0050785549891638!GO:0048522;positive regulation of cellular process;0.0050800009113581!GO:0006302;double-strand break repair;0.00513389142531532!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00513389142531532!GO:0030880;RNA polymerase complex;0.00516785668332721!GO:0045045;secretory pathway;0.00520638734916571!GO:0031418;L-ascorbic acid binding;0.00524741901206936!GO:0004004;ATP-dependent RNA helicase activity;0.00524741901206936!GO:0007243;protein kinase cascade;0.00525459957387533!GO:0008047;enzyme activator activity;0.00534896943831259!GO:0003711;transcription elongation regulator activity;0.00553018363530618!GO:0006509;membrane protein ectodomain proteolysis;0.00554237294113125!GO:0033619;membrane protein proteolysis;0.00554237294113125!GO:0004177;aminopeptidase activity;0.00569107758698303!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00570879872490368!GO:0051052;regulation of DNA metabolic process;0.00592244382686159!GO:0006497;protein amino acid lipidation;0.00597399368447478!GO:0007034;vacuolar transport;0.00608029062229415!GO:0030660;Golgi-associated vesicle membrane;0.00617990408662893!GO:0043488;regulation of mRNA stability;0.0064009566861305!GO:0043487;regulation of RNA stability;0.0064009566861305!GO:0030027;lamellipodium;0.00651021582136199!GO:0040008;regulation of growth;0.00663156841968469!GO:0016126;sterol biosynthetic process;0.00674602282927265!GO:0030134;ER to Golgi transport vesicle;0.00683872419088667!GO:0016408;C-acyltransferase activity;0.00684298236186088!GO:0003690;double-stranded DNA binding;0.00706653542006537!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00714736961208341!GO:0017166;vinculin binding;0.00724272643085484!GO:0030127;COPII vesicle coat;0.00734712241359087!GO:0012507;ER to Golgi transport vesicle membrane;0.00734712241359087!GO:0005869;dynactin complex;0.00745633504149921!GO:0016481;negative regulation of transcription;0.00749869326333791!GO:0000776;kinetochore;0.00775081576674738!GO:0015631;tubulin binding;0.00811254644156269!GO:0006506;GPI anchor biosynthetic process;0.00813848753870916!GO:0008022;protein C-terminus binding;0.00813916422500774!GO:0006595;polyamine metabolic process;0.00815134443886119!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00818027745232726!GO:0031543;peptidyl-proline dioxygenase activity;0.00821277072991673!GO:0016272;prefoldin complex;0.00851196588093272!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00853239806783378!GO:0003746;translation elongation factor activity;0.00856488716911143!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00890615285768784!GO:0005684;U2-dependent spliceosome;0.00907739497575805!GO:0005862;muscle thin filament tropomyosin;0.0091394663365493!GO:0032984;macromolecular complex disassembly;0.00926163973339742!GO:0051128;regulation of cellular component organization and biogenesis;0.00926163973339742!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00953629814958534!GO:0030521;androgen receptor signaling pathway;0.00953629814958534!GO:0043022;ribosome binding;0.00996281206034391!GO:0051287;NAD binding;0.0102549968461818!GO:0000049;tRNA binding;0.0103318856528103!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0104261917173863!GO:0019798;procollagen-proline dioxygenase activity;0.0104313022261512!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0105728302945088!GO:0030659;cytoplasmic vesicle membrane;0.0107182617414782!GO:0000339;RNA cap binding;0.0107882376383038!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0108153552525109!GO:0000428;DNA-directed RNA polymerase complex;0.0108153552525109!GO:0008632;apoptotic program;0.0110118692485865!GO:0005874;microtubule;0.0114948334912717!GO:0000775;chromosome, pericentric region;0.0115105390145789!GO:0042158;lipoprotein biosynthetic process;0.011721890722019!GO:0006352;transcription initiation;0.0118183111321211!GO:0006505;GPI anchor metabolic process;0.0119522506520312!GO:0007264;small GTPase mediated signal transduction;0.0124627876318054!GO:0003684;damaged DNA binding;0.012537271975752!GO:0030125;clathrin vesicle coat;0.0126124863037315!GO:0030665;clathrin coated vesicle membrane;0.0126124863037315!GO:0050662;coenzyme binding;0.0126394272118813!GO:0031901;early endosome membrane;0.012644458467694!GO:0006402;mRNA catabolic process;0.0127710928607495!GO:0003756;protein disulfide isomerase activity;0.0132025447765664!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0132025447765664!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0136561149604542!GO:0007517;muscle development;0.0137742156751548!GO:0043624;cellular protein complex disassembly;0.014045378552826!GO:0005832;chaperonin-containing T-complex;0.0141085565417337!GO:0000082;G1/S transition of mitotic cell cycle;0.0145660393466332!GO:0048144;fibroblast proliferation;0.0146346540569457!GO:0048145;regulation of fibroblast proliferation;0.0146346540569457!GO:0044433;cytoplasmic vesicle part;0.0149326991996651!GO:0043241;protein complex disassembly;0.0150779563453952!GO:0007041;lysosomal transport;0.0151999719681266!GO:0005865;striated muscle thin filament;0.0153306112922019!GO:0006778;porphyrin metabolic process;0.0153306112922019!GO:0033013;tetrapyrrole metabolic process;0.0153306112922019!GO:0030119;AP-type membrane coat adaptor complex;0.0155892638555123!GO:0050811;GABA receptor binding;0.0156804906973602!GO:0007040;lysosome organization and biogenesis;0.0160931682314106!GO:0006354;RNA elongation;0.0161544912901408!GO:0031902;late endosome membrane;0.0163865429213375!GO:0006695;cholesterol biosynthetic process;0.0168866700870624!GO:0031625;ubiquitin protein ligase binding;0.0171014802239286!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0171203996173013!GO:0008243;plasminogen activator activity;0.017556682837075!GO:0030384;phosphoinositide metabolic process;0.0176038918864406!GO:0019752;carboxylic acid metabolic process;0.0179156188856045!GO:0016251;general RNA polymerase II transcription factor activity;0.0180953831996784!GO:0006007;glucose catabolic process;0.0181258429107654!GO:0007033;vacuole organization and biogenesis;0.0181941438618132!GO:0006082;organic acid metabolic process;0.0183720699078897!GO:0048468;cell development;0.01839934156121!GO:0007093;mitotic cell cycle checkpoint;0.0185311657229589!GO:0033673;negative regulation of kinase activity;0.0187010893973979!GO:0006469;negative regulation of protein kinase activity;0.0187010893973979!GO:0009112;nucleobase metabolic process;0.0187500740567618!GO:0043433;negative regulation of transcription factor activity;0.0189318466452291!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0190324658425252!GO:0005856;cytoskeleton;0.0192834036906032!GO:0005801;cis-Golgi network;0.0195584123424249!GO:0005096;GTPase activator activity;0.0195604953167978!GO:0008168;methyltransferase activity;0.0195908450867852!GO:0005657;replication fork;0.0201109860544983!GO:0019206;nucleoside kinase activity;0.020127696729089!GO:0007160;cell-matrix adhesion;0.020225669834404!GO:0007052;mitotic spindle organization and biogenesis;0.02033313911449!GO:0005669;transcription factor TFIID complex;0.0210946439649033!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0213576088605674!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0213576088605674!GO:0006289;nucleotide-excision repair;0.0218397152450291!GO:0006310;DNA recombination;0.0219201254177947!GO:0000209;protein polyubiquitination;0.0221248954983284!GO:0031529;ruffle organization and biogenesis;0.02220417747384!GO:0046519;sphingoid metabolic process;0.0222106266401248!GO:0016741;transferase activity, transferring one-carbon groups;0.0222106266401248!GO:0006643;membrane lipid metabolic process;0.0222209142299038!GO:0006220;pyrimidine nucleotide metabolic process;0.0226558631697841!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0227071421983002!GO:0012506;vesicle membrane;0.022885321130115!GO:0030503;regulation of cell redox homeostasis;0.0231496976551973!GO:0000096;sulfur amino acid metabolic process;0.0231961869082599!GO:0022406;membrane docking;0.0232806984416941!GO:0048278;vesicle docking;0.0232806984416941!GO:0006892;post-Golgi vesicle-mediated transport;0.0232806984416941!GO:0009116;nucleoside metabolic process;0.0234628528565471!GO:0031589;cell-substrate adhesion;0.0234628528565471!GO:0051348;negative regulation of transferase activity;0.023521721265608!GO:0051539;4 iron, 4 sulfur cluster binding;0.0235517283494195!GO:0006118;electron transport;0.0235906798845668!GO:0003678;DNA helicase activity;0.0236633584569129!GO:0008094;DNA-dependent ATPase activity;0.0237005101267226!GO:0016860;intramolecular oxidoreductase activity;0.0237261899964192!GO:0050681;androgen receptor binding;0.0242943245640929!GO:0042168;heme metabolic process;0.0243400895397584!GO:0065007;biological regulation;0.0245566571071455!GO:0006740;NADPH regeneration;0.0249114598180226!GO:0006098;pentose-phosphate shunt;0.0249114598180226!GO:0048146;positive regulation of fibroblast proliferation;0.024914598147237!GO:0046870;cadmium ion binding;0.0250933596567044!GO:0006144;purine base metabolic process;0.0256779482579083!GO:0007021;tubulin folding;0.0257908017513636!GO:0006401;RNA catabolic process;0.0258872146467792!GO:0030131;clathrin adaptor complex;0.0267154942236463!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0267154942236463!GO:0035035;histone acetyltransferase binding;0.0267154942236463!GO:0030032;lamellipodium biogenesis;0.0268132886914964!GO:0030041;actin filament polymerization;0.0269707438137033!GO:0014706;striated muscle development;0.0274244519633373!GO:0031124;mRNA 3'-end processing;0.0280123718078267!GO:0005583;fibrillar collagen;0.0282308933480121!GO:0000030;mannosyltransferase activity;0.0282391642055776!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0290157876977415!GO:0031371;ubiquitin conjugating enzyme complex;0.030316835973507!GO:0022411;cellular component disassembly;0.0318183579293749!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0325987285799876!GO:0005637;nuclear inner membrane;0.0327793179698885!GO:0051098;regulation of binding;0.0328396825149475!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0333216008762272!GO:0007088;regulation of mitosis;0.0333686794600414!GO:0005758;mitochondrial intermembrane space;0.0340806575254946!GO:0006904;vesicle docking during exocytosis;0.0349899898967637!GO:0006611;protein export from nucleus;0.0349899898967637!GO:0031970;organelle envelope lumen;0.0350880051071942!GO:0007030;Golgi organization and biogenesis;0.0351551456071658!GO:0032940;secretion by cell;0.0352573720064711!GO:0005774;vacuolar membrane;0.0354214031171371!GO:0008147;structural constituent of bone;0.0357477022882499!GO:0006672;ceramide metabolic process;0.0361591959953844!GO:0030508;thiol-disulfide exchange intermediate activity;0.0364083800206125!GO:0030833;regulation of actin filament polymerization;0.0378007885844902!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0379475067061509!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0379475067061509!GO:0030518;steroid hormone receptor signaling pathway;0.0383129120847827!GO:0033559;unsaturated fatty acid metabolic process;0.0383142847345719!GO:0006636;unsaturated fatty acid biosynthetic process;0.0383142847345719!GO:0008538;proteasome activator activity;0.0386842643433042!GO:0001872;zymosan binding;0.038732927052271!GO:0001878;response to yeast;0.038732927052271!GO:0006779;porphyrin biosynthetic process;0.038732927052271!GO:0033014;tetrapyrrole biosynthetic process;0.038732927052271!GO:0030911;TPR domain binding;0.0391194320554717!GO:0030149;sphingolipid catabolic process;0.0391814433873965!GO:0006984;ER-nuclear signaling pathway;0.0398620699328343!GO:0009225;nucleotide-sugar metabolic process;0.0400434673909254!GO:0022408;negative regulation of cell-cell adhesion;0.040093032040664!GO:0005784;translocon complex;0.0406610103856784!GO:0032508;DNA duplex unwinding;0.0412928486009038!GO:0032392;DNA geometric change;0.0412928486009038!GO:0006749;glutathione metabolic process;0.0421200714730475!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0422180772221275!GO:0004287;prolyl oligopeptidase activity;0.0433233381165314!GO:0016407;acetyltransferase activity;0.0440046552514712!GO:0000287;magnesium ion binding;0.0443916647084574!GO:0050790;regulation of catalytic activity;0.0443956584477254!GO:0006607;NLS-bearing substrate import into nucleus;0.0448015128643974!GO:0031301;integral to organelle membrane;0.0452252523893941!GO:0051775;response to redox state;0.0456760223617036!GO:0006980;redox signal response;0.0456760223617036!GO:0030145;manganese ion binding;0.0458015431221776!GO:0030433;ER-associated protein catabolic process;0.0458015431221776!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0458015431221776!GO:0045792;negative regulation of cell size;0.0467152858564499!GO:0006790;sulfur metabolic process;0.0482053785886192!GO:0015036;disulfide oxidoreductase activity;0.0485805341532023!GO:0047485;protein N-terminus binding;0.0485929965791066!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0487513784659666!GO:0033043;regulation of organelle organization and biogenesis;0.0487513784659666!GO:0001725;stress fiber;0.049033883226365!GO:0032432;actin filament bundle;0.049033883226365!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.049033883226365 | |||
|sample_id=11241 | |sample_id=11241 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=skeletal muscle | |sample_tissue=skeletal muscle | ||
|top_motifs=NKX3-1:2.34658123597;FOXL1:1.6833986254;NR3C1:1.65381771102;HMGA1,2:1.45161867784;NKX2-2,8:1.35919552312;EVI1:1.27688861522;HIF1A:1.27185581117;AIRE:1.20648741474;XBP1:1.19991772302;POU3F1..4:1.1922834914;ALX4:1.18143578341;HBP1_HMGB_SSRP1_UBTF:1.16018540484;HSF1,2:1.13642962784;GZF1:1.12007405792;IKZF1:1.10383719303;ZNF238:1.09145631516;TAL1_TCF{3,4,12}:1.08062201792;TEAD1:1.07356348367;SRF:1.05406855792;UFEwm:1.00255782903;HOX{A5,B5}:0.912053929674;TBX4,5:0.909598634328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.902220834589;MAFB:0.881638840257;TBP:0.875198143426;MYBL2:0.833430369202;EBF1:0.77473812988;ELK1,4_GABP{A,B1}:0.751564990856;HES1:0.715679300578;GFI1B:0.71417476744;EN1,2:0.685618215115;NANOG{mouse}:0.679841024261;HMX1:0.678010830463;TFCP2:0.664481385814;TFAP4:0.637719477259;PPARG:0.637616588401;KLF4:0.609737836564;ONECUT1,2:0.593695991353;PAX1,9:0.584742994494;NFE2L1:0.579121026488;ATF6:0.555517517192;MTE{core}:0.545823517364;AR:0.51433161236;LHX3,4:0.507427118644;POU1F1:0.503389288659;PAX4:0.494576952125;TLX1..3_NFIC{dimer}:0.492338785601;RXR{A,B,G}:0.491118127712;NRF1:0.490318076068;ZBTB16:0.485981452808;ESR1:0.483902769886;TP53:0.475835054696;TGIF1:0.471430163487;GTF2A1,2:0.470960752885;NHLH1,2:0.470059075113;MEF2{A,B,C,D}:0.46860301019;STAT5{A,B}:0.460986086711;NKX2-1,4:0.460506903618;NFATC1..3:0.449306382816;GCM1,2:0.44926016843;NFE2L2:0.448793985203;bHLH_family:0.448575120858;HOX{A6,A7,B6,B7}:0.446113826648;ARID5B:0.436525496017;TEF:0.423854716523;POU6F1:0.416505456338;ZNF384:0.415070121405;YY1:0.409360723978;PAX5:0.394416196522;ALX1:0.372021216248;HOX{A4,D4}:0.356509368024;T:0.330492718456;GLI1..3:0.304600611187;ZNF143:0.302232964242;RXRA_VDR{dimer}:0.299843849984;PRRX1,2:0.2729665233;NFIX:0.271822743719;MYOD1:0.270931189815;HAND1,2:0.255169127631;LEF1_TCF7_TCF7L1,2:0.247954998677;BACH2:0.205335644345;NKX3-2:0.175614100781;ESRRA:0.166507007643;FOS_FOS{B,L1}_JUN{B,D}:0.163527532853;MAZ:0.156025926823;SOX17:0.137796667862;GATA4:0.13110579294;CDX1,2,4:0.126203050632;HLF:0.104078911638;PAX8:0.0966472089743;MZF1:0.0904491138898;HIC1:0.0888988670198;MTF1:0.0864717141631;ZBTB6:0.0801400798912;CDC5L:0.0645576336942;GFI1:0.0609942949394;DBP:0.0465034633073;SREBF1,2:0.0410891683709;PDX1:0.0117684206439;XCPE1{core}:0.000113813233304;NFE2:-0.00784210330666;DMAP1_NCOR{1,2}_SMARC:-0.0179311954648;SOX5:-0.0209463811732;PAX2:-0.0407712149958;NFIL3:-0.0460277623231;TFAP2B:-0.0480178412032;HNF1A:-0.0510912610307;ADNP_IRX_SIX_ZHX:-0.0641106287564;CEBPA,B_DDIT3:-0.0724841813159;NR5A1,2:-0.0785739637309;ELF1,2,4:-0.0813315804332;GTF2I:-0.082191673157;NR6A1:-0.0945782037454;SPZ1:-0.10081061831;FOSL2:-0.108029965003;ZNF148:-0.109377761607;AHR_ARNT_ARNT2:-0.116620922696;TLX2:-0.118695543047;SMAD1..7,9:-0.120104118389;FOXP3:-0.1278594665;IRF1,2:-0.141968625014;TFDP1:-0.143725605446;FOXM1:-0.158251786413;TFAP2{A,C}:-0.161111398116;E2F1..5:-0.168275476568;IRF7:-0.169797510588;STAT2,4,6:-0.175131474906;FOXO1,3,4:-0.176413162972;ZFP161:-0.184284093453;SP1:-0.195375374417;MYFfamily:-0.197573799541;PRDM1:-0.208230847965;ZIC1..3:-0.210377553575;RUNX1..3:-0.217972522253;LMO2:-0.218120307472;NR1H4:-0.220241676095;MYB:-0.247425611318;CREB1:-0.279184878095;JUN:-0.280070648808;HNF4A_NR2F1,2:-0.283256212195;FOXN1:-0.30366889179;REST:-0.34123182631;EGR1..3:-0.34711932738;STAT1,3:-0.368730678347;RREB1:-0.372657444644;RFX1:-0.377678200184;PAX6:-0.380084411356;SPI1:-0.39006940556;NFY{A,B,C}:-0.396774329093;IKZF2:-0.40073177307;FOXD3:-0.431227961794;FOXA2:-0.438290141241;FOX{I1,J2}:-0.438590036869;NFKB1_REL_RELA:-0.45712004977;TOPORS:-0.474578187598;PATZ1:-0.475557912675;ETS1,2:-0.486122296612;FOXP1:-0.535037171277;MED-1{core}:-0.536266984882;EP300:-0.549712157808;CRX:-0.568320073709;PITX1..3:-0.583209143162;VSX1,2:-0.583753021378;ZNF423:-0.5901876991;PAX3,7:-0.603744722066;OCT4_SOX2{dimer}:-0.623760231665;SPIB:-0.626315816937;NKX2-3_NKX2-5:-0.626544055357;HOXA9_MEIS1:-0.636004855346;SOX{8,9,10}:-0.687233211121;ATF5_CREB3:-0.688507774512;SNAI1..3:-0.702454677501;RFX2..5_RFXANK_RFXAP:-0.709254531963;NKX6-1,2:-0.718955539992;SOX2:-0.731060675152;BPTF:-0.745728445036;FOX{D1,D2}:-0.765925002381;ATF2:-0.785716610509;ATF4:-0.827636997692;GATA6:-0.836683293753;POU5F1:-0.840045043575;RBPJ:-0.841060682726;CUX2:-0.875454479801;NANOG:-0.917141630032;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.943286262595;BREu{core}:-1.08358530122;POU2F1..3:-1.08688585015;ZEB1:-1.12743331185;FOXQ1:-1.18019171829;FOX{F1,F2,J1}:-1.18481569425;RORA:-1.25503520778;PBX1:-1.32619921356 | |top_motifs=NKX3-1:2.34658123597;FOXL1:1.6833986254;NR3C1:1.65381771102;HMGA1,2:1.45161867784;NKX2-2,8:1.35919552312;EVI1:1.27688861522;HIF1A:1.27185581117;AIRE:1.20648741474;XBP1:1.19991772302;POU3F1..4:1.1922834914;ALX4:1.18143578341;HBP1_HMGB_SSRP1_UBTF:1.16018540484;HSF1,2:1.13642962784;GZF1:1.12007405792;IKZF1:1.10383719303;ZNF238:1.09145631516;TAL1_TCF{3,4,12}:1.08062201792;TEAD1:1.07356348367;SRF:1.05406855792;UFEwm:1.00255782903;HOX{A5,B5}:0.912053929674;TBX4,5:0.909598634328;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.902220834589;MAFB:0.881638840257;TBP:0.875198143426;MYBL2:0.833430369202;EBF1:0.77473812988;ELK1,4_GABP{A,B1}:0.751564990856;HES1:0.715679300578;GFI1B:0.71417476744;EN1,2:0.685618215115;NANOG{mouse}:0.679841024261;HMX1:0.678010830463;TFCP2:0.664481385814;TFAP4:0.637719477259;PPARG:0.637616588401;KLF4:0.609737836564;ONECUT1,2:0.593695991353;PAX1,9:0.584742994494;NFE2L1:0.579121026488;ATF6:0.555517517192;MTE{core}:0.545823517364;AR:0.51433161236;LHX3,4:0.507427118644;POU1F1:0.503389288659;PAX4:0.494576952125;TLX1..3_NFIC{dimer}:0.492338785601;RXR{A,B,G}:0.491118127712;NRF1:0.490318076068;ZBTB16:0.485981452808;ESR1:0.483902769886;TP53:0.475835054696;TGIF1:0.471430163487;GTF2A1,2:0.470960752885;NHLH1,2:0.470059075113;MEF2{A,B,C,D}:0.46860301019;STAT5{A,B}:0.460986086711;NKX2-1,4:0.460506903618;NFATC1..3:0.449306382816;GCM1,2:0.44926016843;NFE2L2:0.448793985203;bHLH_family:0.448575120858;HOX{A6,A7,B6,B7}:0.446113826648;ARID5B:0.436525496017;TEF:0.423854716523;POU6F1:0.416505456338;ZNF384:0.415070121405;YY1:0.409360723978;PAX5:0.394416196522;ALX1:0.372021216248;HOX{A4,D4}:0.356509368024;T:0.330492718456;GLI1..3:0.304600611187;ZNF143:0.302232964242;RXRA_VDR{dimer}:0.299843849984;PRRX1,2:0.2729665233;NFIX:0.271822743719;MYOD1:0.270931189815;HAND1,2:0.255169127631;LEF1_TCF7_TCF7L1,2:0.247954998677;BACH2:0.205335644345;NKX3-2:0.175614100781;ESRRA:0.166507007643;FOS_FOS{B,L1}_JUN{B,D}:0.163527532853;MAZ:0.156025926823;SOX17:0.137796667862;GATA4:0.13110579294;CDX1,2,4:0.126203050632;HLF:0.104078911638;PAX8:0.0966472089743;MZF1:0.0904491138898;HIC1:0.0888988670198;MTF1:0.0864717141631;ZBTB6:0.0801400798912;CDC5L:0.0645576336942;GFI1:0.0609942949394;DBP:0.0465034633073;SREBF1,2:0.0410891683709;PDX1:0.0117684206439;XCPE1{core}:0.000113813233304;NFE2:-0.00784210330666;DMAP1_NCOR{1,2}_SMARC:-0.0179311954648;SOX5:-0.0209463811732;PAX2:-0.0407712149958;NFIL3:-0.0460277623231;TFAP2B:-0.0480178412032;HNF1A:-0.0510912610307;ADNP_IRX_SIX_ZHX:-0.0641106287564;CEBPA,B_DDIT3:-0.0724841813159;NR5A1,2:-0.0785739637309;ELF1,2,4:-0.0813315804332;GTF2I:-0.082191673157;NR6A1:-0.0945782037454;SPZ1:-0.10081061831;FOSL2:-0.108029965003;ZNF148:-0.109377761607;AHR_ARNT_ARNT2:-0.116620922696;TLX2:-0.118695543047;SMAD1..7,9:-0.120104118389;FOXP3:-0.1278594665;IRF1,2:-0.141968625014;TFDP1:-0.143725605446;FOXM1:-0.158251786413;TFAP2{A,C}:-0.161111398116;E2F1..5:-0.168275476568;IRF7:-0.169797510588;STAT2,4,6:-0.175131474906;FOXO1,3,4:-0.176413162972;ZFP161:-0.184284093453;SP1:-0.195375374417;MYFfamily:-0.197573799541;PRDM1:-0.208230847965;ZIC1..3:-0.210377553575;RUNX1..3:-0.217972522253;LMO2:-0.218120307472;NR1H4:-0.220241676095;MYB:-0.247425611318;CREB1:-0.279184878095;JUN:-0.280070648808;HNF4A_NR2F1,2:-0.283256212195;FOXN1:-0.30366889179;REST:-0.34123182631;EGR1..3:-0.34711932738;STAT1,3:-0.368730678347;RREB1:-0.372657444644;RFX1:-0.377678200184;PAX6:-0.380084411356;SPI1:-0.39006940556;NFY{A,B,C}:-0.396774329093;IKZF2:-0.40073177307;FOXD3:-0.431227961794;FOXA2:-0.438290141241;FOX{I1,J2}:-0.438590036869;NFKB1_REL_RELA:-0.45712004977;TOPORS:-0.474578187598;PATZ1:-0.475557912675;ETS1,2:-0.486122296612;FOXP1:-0.535037171277;MED-1{core}:-0.536266984882;EP300:-0.549712157808;CRX:-0.568320073709;PITX1..3:-0.583209143162;VSX1,2:-0.583753021378;ZNF423:-0.5901876991;PAX3,7:-0.603744722066;OCT4_SOX2{dimer}:-0.623760231665;SPIB:-0.626315816937;NKX2-3_NKX2-5:-0.626544055357;HOXA9_MEIS1:-0.636004855346;SOX{8,9,10}:-0.687233211121;ATF5_CREB3:-0.688507774512;SNAI1..3:-0.702454677501;RFX2..5_RFXANK_RFXAP:-0.709254531963;NKX6-1,2:-0.718955539992;SOX2:-0.731060675152;BPTF:-0.745728445036;FOX{D1,D2}:-0.765925002381;ATF2:-0.785716610509;ATF4:-0.827636997692;GATA6:-0.836683293753;POU5F1:-0.840045043575;RBPJ:-0.841060682726;CUX2:-0.875454479801;NANOG:-0.917141630032;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.943286262595;BREu{core}:-1.08358530122;POU2F1..3:-1.08688585015;ZEB1:-1.12743331185;FOXQ1:-1.18019171829;FOX{F1,F2,J1}:-1.18481569425;RORA:-1.25503520778;PBX1:-1.32619921356 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11241-116D8;search_select_hide=table117:FF:11241-116D8 | |||
}} | }} | ||
Latest revision as of 16:27, 3 June 2020
| Name: | Myoblast, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10870 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10870
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10870
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.509 |
| 10 | 10 | 0.108 |
| 100 | 100 | 0.755 |
| 101 | 101 | 0.237 |
| 102 | 102 | 0.251 |
| 103 | 103 | 0.106 |
| 104 | 104 | 0.831 |
| 105 | 105 | 0.00303 |
| 106 | 106 | 0.0498 |
| 107 | 107 | 0.815 |
| 108 | 108 | 0.475 |
| 109 | 109 | 0.109 |
| 11 | 11 | 0.613 |
| 110 | 110 | 0.479 |
| 111 | 111 | 0.644 |
| 112 | 112 | 0.629 |
| 113 | 113 | 0.678 |
| 114 | 114 | 0.108 |
| 115 | 115 | 0.354 |
| 116 | 116 | 0.16 |
| 117 | 117 | 0.374 |
| 118 | 118 | 0.579 |
| 119 | 119 | 0.814 |
| 12 | 12 | 0.776 |
| 120 | 120 | 0.23 |
| 121 | 121 | 0.867 |
| 122 | 122 | 0.0529 |
| 123 | 123 | 0.00111 |
| 124 | 124 | 0.0982 |
| 125 | 125 | 0.462 |
| 126 | 126 | 0.867 |
| 127 | 127 | 0.719 |
| 128 | 128 | 0.0956 |
| 129 | 129 | 0.946 |
| 13 | 13 | 0.882 |
| 130 | 130 | 0.462 |
| 131 | 131 | 0.427 |
| 132 | 132 | 0.719 |
| 133 | 133 | 0.0714 |
| 134 | 134 | 0.0176 |
| 135 | 135 | 0.367 |
| 136 | 136 | 0.278 |
| 137 | 137 | 0.377 |
| 138 | 138 | 0.22 |
| 139 | 139 | 0.987 |
| 14 | 14 | 0.0702 |
| 140 | 140 | 0.0764 |
| 141 | 141 | 0.316 |
| 142 | 142 | 0.8 |
| 143 | 143 | 0.556 |
| 144 | 144 | 0.793 |
| 145 | 145 | 0.702 |
| 146 | 146 | 0.572 |
| 147 | 147 | 0.0904 |
| 148 | 148 | 0.754 |
| 149 | 149 | 0.414 |
| 15 | 15 | 0.878 |
| 150 | 150 | 0.894 |
| 151 | 151 | 0.881 |
| 152 | 152 | 0.0688 |
| 153 | 153 | 0.844 |
| 154 | 154 | 0.766 |
| 155 | 155 | 8.49239e-4 |
| 156 | 156 | 0.375 |
| 157 | 157 | 0.0286 |
| 158 | 158 | 0.0205 |
| 159 | 159 | 0.27 |
| 16 | 16 | 0.123 |
| 160 | 160 | 0.746 |
| 161 | 161 | 0.616 |
| 162 | 162 | 0.926 |
| 163 | 163 | 0.391 |
| 164 | 164 | 0.98 |
| 165 | 165 | 0.287 |
| 166 | 166 | 0.724 |
| 167 | 167 | 0.86 |
| 168 | 168 | 0.602 |
| 169 | 169 | 0.159 |
| 17 | 17 | 0.859 |
| 18 | 18 | 0.317 |
| 19 | 19 | 0.16 |
| 2 | 2 | 0.473 |
| 20 | 20 | 0.941 |
| 21 | 21 | 0.0199 |
| 22 | 22 | 0.672 |
| 23 | 23 | 0.956 |
| 24 | 24 | 0.612 |
| 25 | 25 | 0.858 |
| 26 | 26 | 0.682 |
| 27 | 27 | 0.646 |
| 28 | 28 | 0.266 |
| 29 | 29 | 0.593 |
| 3 | 3 | 0.595 |
| 30 | 30 | 0.646 |
| 31 | 31 | 0.601 |
| 32 | 32 | 3.34379e-4 |
| 33 | 33 | 0.877 |
| 34 | 34 | 0.18 |
| 35 | 35 | 0.06 |
| 36 | 36 | 0.00902 |
| 37 | 37 | 0.102 |
| 38 | 38 | 0.587 |
| 39 | 39 | 0.159 |
| 4 | 4 | 0.174 |
| 40 | 40 | 0.0625 |
| 41 | 41 | 0.259 |
| 42 | 42 | 0.591 |
| 43 | 43 | 0.664 |
| 44 | 44 | 0.251 |
| 45 | 45 | 0.105 |
| 46 | 46 | 0.779 |
| 47 | 47 | 0.634 |
| 48 | 48 | 0.65 |
| 49 | 49 | 0.167 |
| 5 | 5 | 0.974 |
| 50 | 50 | 0.408 |
| 51 | 51 | 0.632 |
| 52 | 52 | 0.453 |
| 53 | 53 | 0.0323 |
| 54 | 54 | 0.609 |
| 55 | 55 | 0.344 |
| 56 | 56 | 0.965 |
| 57 | 57 | 0.923 |
| 58 | 58 | 0.147 |
| 59 | 59 | 0.83 |
| 6 | 6 | 0.308 |
| 60 | 60 | 0.233 |
| 61 | 61 | 0.778 |
| 62 | 62 | 0.502 |
| 63 | 63 | 0.447 |
| 64 | 64 | 0.08 |
| 65 | 65 | 0.42 |
| 66 | 66 | 0.557 |
| 67 | 67 | 0.398 |
| 68 | 68 | 0.851 |
| 69 | 69 | 0.497 |
| 7 | 7 | 0.676 |
| 70 | 70 | 0.899 |
| 71 | 71 | 0.359 |
| 72 | 72 | 0.645 |
| 73 | 73 | 0.0024 |
| 74 | 74 | 0.16 |
| 75 | 75 | 0.319 |
| 76 | 76 | 0.92 |
| 77 | 77 | 0.141 |
| 78 | 78 | 0.892 |
| 79 | 79 | 0.465 |
| 8 | 8 | 0.428 |
| 80 | 80 | 0.0952 |
| 81 | 81 | 0.519 |
| 82 | 82 | 0.663 |
| 83 | 83 | 0.632 |
| 84 | 84 | 0.966 |
| 85 | 85 | 0.989 |
| 86 | 86 | 0.919 |
| 87 | 87 | 0.0165 |
| 88 | 88 | 0.545 |
| 89 | 89 | 0.386 |
| 9 | 9 | 0.97 |
| 90 | 90 | 0.636 |
| 91 | 91 | 0.282 |
| 92 | 92 | 0.763 |
| 93 | 93 | 0.975 |
| 94 | 94 | 0.619 |
| 95 | 95 | 0.129 |
| 96 | 96 | 0.697 |
| 97 | 97 | 0.875 |
| 98 | 98 | 0.0905 |
| 99 | 99 | 0.00546 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10870
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0000680 (muscle precursor cell)
0002321 (embryonic cell)
0002371 (somatic cell)
0000056 (myoblast)
0000255 (eukaryotic cell)
0000515 (skeletal muscle myoblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000164 (human skeletal muscle myoblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000355 (multi-potent skeletal muscle stem cell)
CL:0000222 (mesodermal cell)
CL:0000515 (skeletal muscle myoblast)
