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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000087,UBERON:0000091,UBERON:0000358,UBERON:0000465,UBERON:0000468,UBERON:0000478,UBERON:0000479,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0002050,UBERON:0002331,UBERON:0002384,UBERON:0002532,UBERON:0003081,UBERON:0003104,UBERON:0003422,UBERON:0004120,UBERON:0005423,UBERON:0005728,UBERON:0007806,UBERON:0008780,UBERON:0009142
+
|DRA_sample_Accession=CAGE@SAMD00005087
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000081,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000548,CL:0000723,CL:0000988,CL:0002320,CL:0002371,CL:0002569
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005087
 +
|accession_numbers=CAGE;DRX008365;DRR009237;DRZ000662;DRZ002047;DRZ012012;DRZ013397
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037120;DRR041486;DRZ007128
 +
|ancestors_in_anatomy_facet=UBERON:0002331,UBERON:0002384,UBERON:0000479,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0001062,UBERON:0000478,UBERON:0003104,UBERON:0010317,UBERON:0003422,UBERON:0009142
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000081,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002569
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000117
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
|
+
|expression_enrichment_score=
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 35: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Multipotent%2520Cord%2520Blood%2520Unrestricted%2520Somatic%2520Stem%2520Cells%252c%2520donor1.CNhs11350.11549-120C1.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11549-120C1
 
|id=FF:11549-120C1
|is_a=EFO:0002091;;FF:0000002;;FF:0000117;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000117
 +
|is_obsolete=
 +
|library_id=CNhs11350
 +
|library_id_phase_based=2:CNhs11350
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11549
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10008.ATGTCA.11549
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11549
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10008.ATGTCA.11549
 
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
 
|name=Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 42: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11350,LSID769,release014,COMPLETED
 
|profile_hcage=CNhs11350,LSID769,release014,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10008,,,
 
|profile_srnaseq=SRhi10008,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0670277544724979,0,-0.27483329820609,-0.235758422769998,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0600327347345394,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.530999466636189,0,-0.0992545791590686,0,0,0,0,0,0,0,0,0.146811100339547,0,0,0,0,0,0,0.0932902756138882,-0.0969923612426051,0,0,-0.00405335159920873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00714928582467687,0,0,0,-0.0461030182683491,0,0,0,-0.189601760257075,-0.126176656147719,0,0.0932902756138882,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0113528473743107,0,0,0,-0.0415918392832304,0.0006559862327295,0,0,0,0,0,0
 +
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.0932902756138882,0,0,-0.0771373821892639,0,-0.0870972081101392,-0.143515142523472,0,0,0.0632285475767062,0,0.0932902756138882,0,0,0,0,0,0,0,0.510843159115227,0,0.0428777240245733,0,0,0,0,0,0.0815167797434619,0,-0.028296337296633,0.02494601453652,0,0,0,0,0.250805267299565,0,-0.0275892081798524,-0.0827201683234173,0.291923447705754,-0.103303532605654,-0.0502736686189807,0,0,0.0466451378069441,0.123539824920404,-0.29301887511288,0,0,0.341091957952406,0.171309458621765,0,0,0.834658500670893,0,0.318097583156696,-0.0137946040899262,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,0.0305833078396884,0,0,0,-0.0533564906745033,0,0,0.0137028546853024,0.117357034157008,-0.137716078073863,-0.218877026281952,0,-0.209099451396025,-0.0248220517472152,-0.463000081205933,-0.0189202202858807,0.022639643725162,0.101941728155906,0,-0.0461030182683491,-0.0609125908340031,-0.0557523919252,-0.194830672153088,-0.0695591937677079,0.252518920195922,-0.108838377096935,0,0,0,0.331835466372483,0,0,0.148848311591018,0.0173094296534025,-0.0212298257352788,0.0685028998070764,0.0282392317367038,-0.280318080078856,0.324988098316645,-0.287394959800294,0,0.443543578629442,0,0,-0.0852441194966205,0.0165169912548579,-0.0054419930235613,-0.323902725472926,0,-0.019041204809154,-0.0683442610773682,0,0.0399796170938715,-0.122254012440578,0,0.0932902756138882,0.105529207474201,0,0,0,0.0291168871752886,0.170041493096301,-0.00392557405689309,-0.247568695324413,-0.139565285941657,0,-0.123869593022541,-0.0240770499635055,-0.0010295361424782,0,-0.255617126499242,0.145913550248359,0,-0.0573896190525533,0,-0.0679846856144806,0.0286981693318953,-0.052209341954909,-0.252353312295437,-0.0584468268118252,-0.116089100268605,-0.0939978182431997,-0.189601760257075,0.136803754618334,0.0162052602087589,-0.0881268324752877,-0.0401205326926649,0.421160898773309,-0.292509120979655,-0.105271152909871,-0.008908556555852,0,0.115313073869219,0,-0.208240246152263,0,-0.348966664030681,0.121792483720239,-0.147365926874933,0.00228866371490821,0,0.0145634103587631,-0.149167911706183,0,-0.0138972722938034,0,0,0.191685159570123,-0.166696499876393,-0.165005290057645,-0.00732357232410025,0,0.244332463821052,0,0.170041493096301,0.144140957272741,-0.1421857621505,0,0.0417638037301084,-0.109980101407068,0.0347469848724968,0.119273112108749,0,0,-0.410456152449042,0,0.0932902756138882,-0.0453193097627601,0,0.143082501812058,-0.160036065872867,-0.0203282990072851,0.0373389143986212,0,0,-0.0842374903512874,0,0.361764886047543,0,0,-0.0188988261977966,0,0,0.0466451378069441,0.291923447705754,0,0.00821792014340619,-0.0578367399903941,0,0,0,0,0,0.0244048621152095,0.0728757095442046,0,0.070802776606254,0,0,0,0,0.235244185543683,0,0,1.46293840447928,0.716197299266346,-0.007602240844989,0.112226769867262,0.0466451378069441,0,0,0,0.019520782990208,-0.109946286480836,0,-0.0385724308837435,0,0,0,0,0.00714928582467687,0,0,0,0.0466451378069441,0.0355598185602242,0.0330907320039886,0,0,0,-0.27695440160179,0,0,0.170041493096301,0.00374281929151115,-0.0798592365268233,0,0.0932902756138882,0.421296934248628,0,-0.167870631315592,-0.0815818795468414,0,-0.303127364879225,0.179405054892595,0.260728211048075,0,0,-0.091305638693587,0,0.0466451378069441,0.122990576454618,0,0,0,0,0,0,0,0,0,0.020929673143927,0,0,0,0,0,0,0,0.0932902756138882,0,0,0,0.075298181797353,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.214017731491223,0,0,0,0,0,0,0,0,0.0595735269729474,0,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.471516845539996,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218733156869315,-0.043107634065001,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,-0.113884373708977,0,0,0,0.0652451083071441,0,-0.0670277544724979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850207465481505,0,0,0,0.517357969352806,0.0629057020995197,0.00471593173284374,-0.0182278519431524,0,0,0.157606704408839,0,0,0,0,0,0,-0.031340424028527,0.0932902756138882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0713260414030406,0,0,0,0,0,0,0,-0.0979578962680575,0,0,-0.045387671993582,0,0,0,0,0,0,0.0389726741778698,0.514196650344257,-0.0380126715979208,0,0,0,0.178082556018458,0,0,0,0.0932902756138882,0.275274855485861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0600327347345394,0,0,0,0,0,0,0,0,0,0,0,0,0.0850207465481505,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0932902756138882,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0.235244185543683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.213086229657044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.312138591336506,0,0,0,0,0,0,0,0,0.530999466636189,0,0,0,0,-0.0482220752390542,0,0.00891364338386111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.550504042515712,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0,0,0,0.170041493096301,0,0,0,0,0,0,0,0,0,0,-0.160320332674617,0,0,-0.05252874540486,0,0,0,0,0,0,0,0,0,0,0,0,0.0319700964637618,0,0,0,0,0,0,0,0,0,0,0.293622200679094,0,0,0,0,0,0,0,0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|rna_box=120
 
|rna_box=120
 
|rna_catalog_number=N/A
 
|rna_catalog_number=N/A
Line 56: Line 82:
 
|rna_tube_id=120C1
 
|rna_tube_id=120C1
 
|rna_weight_ug=55.9
 
|rna_weight_ug=55.9
 +
|rnaseq_library_id=SRhi10008.ATGTCA
 
|sample_age=?
 
|sample_age=?
 +
|sample_category=primary cells
 
|sample_cell_catalog=HMpC-500
 
|sample_cell_catalog=HMpC-500
 
|sample_cell_line=
 
|sample_cell_line=
Line 69: Line 97:
 
|sample_ethnicity=C
 
|sample_ethnicity=C
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.57131220703426e-222!GO:0005737;cytoplasm;3.70125322298612e-192!GO:0043226;organelle;3.0198095029007e-173!GO:0043229;intracellular organelle;6.13529207583673e-173!GO:0043231;intracellular membrane-bound organelle;1.88587312899331e-168!GO:0043227;membrane-bound organelle;3.86135730073078e-168!GO:0044444;cytoplasmic part;9.55247257816966e-138!GO:0044422;organelle part;5.57864271916184e-131!GO:0044446;intracellular organelle part;1.22065781420582e-129!GO:0032991;macromolecular complex;2.14143921040489e-94!GO:0005515;protein binding;7.09213782841523e-82!GO:0030529;ribonucleoprotein complex;2.10033249809049e-79!GO:0044238;primary metabolic process;1.08903085440637e-78!GO:0044237;cellular metabolic process;3.00878240870482e-77!GO:0043170;macromolecule metabolic process;2.13104579456695e-72!GO:0043233;organelle lumen;1.4863093519601e-66!GO:0031974;membrane-enclosed lumen;1.4863093519601e-66!GO:0005739;mitochondrion;2.32645652196957e-63!GO:0003723;RNA binding;1.16496710736599e-60!GO:0044428;nuclear part;3.53117693331799e-60!GO:0005634;nucleus;3.20910421991859e-56!GO:0031090;organelle membrane;1.08704593459967e-52!GO:0019538;protein metabolic process;4.19705051874055e-52!GO:0016043;cellular component organization and biogenesis;1.10218217794159e-51!GO:0005840;ribosome;2.4480397867504e-49!GO:0015031;protein transport;1.78362487781669e-48!GO:0043234;protein complex;3.27022729351654e-48!GO:0033036;macromolecule localization;1.00494557906008e-47!GO:0006412;translation;3.18853022311992e-47!GO:0044260;cellular macromolecule metabolic process;2.97317033061896e-46!GO:0044267;cellular protein metabolic process;1.51215605754953e-45!GO:0045184;establishment of protein localization;2.21239417757288e-45!GO:0008104;protein localization;1.30485277802338e-44!GO:0003735;structural constituent of ribosome;1.41821334311241e-43!GO:0006396;RNA processing;1.41821334311241e-43!GO:0044429;mitochondrial part;2.81624901351513e-43!GO:0009058;biosynthetic process;7.28884028569788e-41!GO:0046907;intracellular transport;6.99268727383492e-39!GO:0031981;nuclear lumen;1.17522352189341e-38!GO:0005829;cytosol;5.66329773210223e-38!GO:0009059;macromolecule biosynthetic process;1.10317841503746e-37!GO:0031967;organelle envelope;1.45431846150702e-37!GO:0031975;envelope;2.34188918521664e-37!GO:0033279;ribosomal subunit;3.90697214967892e-37!GO:0044249;cellular biosynthetic process;3.93310361322469e-37!GO:0043283;biopolymer metabolic process;3.10664588367702e-35!GO:0016071;mRNA metabolic process;1.32731683623698e-32!GO:0010467;gene expression;4.40435234256231e-32!GO:0008380;RNA splicing;1.52366764279281e-31!GO:0006886;intracellular protein transport;1.54463169832293e-31!GO:0006996;organelle organization and biogenesis;1.25135835552995e-30!GO:0065003;macromolecular complex assembly;1.01223847439322e-29!GO:0006397;mRNA processing;5.1503690118177e-29!GO:0005740;mitochondrial envelope;5.52332474075362e-29!GO:0043228;non-membrane-bound organelle;1.12964713639513e-28!GO:0043232;intracellular non-membrane-bound organelle;1.12964713639513e-28!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.84241995314219e-28!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.60560351358121e-27!GO:0031966;mitochondrial membrane;1.86008959906313e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.63929207444131e-27!GO:0022607;cellular component assembly;4.53794045414791e-26!GO:0019866;organelle inner membrane;6.02949266798566e-26!GO:0051649;establishment of cellular localization;1.0663841630451e-25!GO:0051641;cellular localization;1.6251731111845e-25!GO:0005743;mitochondrial inner membrane;9.68079638170034e-25!GO:0005654;nucleoplasm;4.77360884229599e-24!GO:0006119;oxidative phosphorylation;2.24734777597539e-22!GO:0005783;endoplasmic reticulum;7.43384773048973e-22!GO:0005681;spliceosome;1.06560761625748e-21!GO:0006457;protein folding;1.08766572093638e-21!GO:0044445;cytosolic part;1.33029604959034e-21!GO:0000166;nucleotide binding;2.31416757744069e-21!GO:0044455;mitochondrial membrane part;2.94947995607009e-21!GO:0012505;endomembrane system;8.65256398627301e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.9237080963535e-20!GO:0016462;pyrophosphatase activity;2.02441467403525e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;2.87645377475906e-20!GO:0015934;large ribosomal subunit;5.75817356303559e-20!GO:0017111;nucleoside-triphosphatase activity;6.01014009814013e-20!GO:0044451;nucleoplasm part;1.38527976728193e-19!GO:0016874;ligase activity;2.45071831511872e-19!GO:0006259;DNA metabolic process;5.93633136793058e-19!GO:0044432;endoplasmic reticulum part;1.62082771515619e-18!GO:0006512;ubiquitin cycle;1.86008681801389e-18!GO:0015935;small ribosomal subunit;4.1393649311318e-18!GO:0048770;pigment granule;9.83328964186847e-18!GO:0042470;melanosome;9.83328964186847e-18!GO:0005794;Golgi apparatus;2.66022931663357e-17!GO:0022618;protein-RNA complex assembly;5.31888561215572e-17!GO:0031980;mitochondrial lumen;7.55558277526371e-17!GO:0005759;mitochondrial matrix;7.55558277526371e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;2.39049955309337e-16!GO:0051186;cofactor metabolic process;2.81028480063263e-16!GO:0008134;transcription factor binding;3.1115848167026e-16!GO:0005746;mitochondrial respiratory chain;3.33327723181324e-16!GO:0044257;cellular protein catabolic process;4.15285169531765e-16!GO:0019941;modification-dependent protein catabolic process;4.37463489301072e-16!GO:0043632;modification-dependent macromolecule catabolic process;4.37463489301072e-16!GO:0044265;cellular macromolecule catabolic process;4.89856528748816e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.89856528748816e-16!GO:0048193;Golgi vesicle transport;5.4840004530021e-16!GO:0043285;biopolymer catabolic process;5.60182668593703e-16!GO:0032553;ribonucleotide binding;9.53704300005506e-16!GO:0032555;purine ribonucleotide binding;9.53704300005506e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.00197933855003e-15!GO:0005730;nucleolus;1.67167368446037e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.68690360578277e-15!GO:0016192;vesicle-mediated transport;1.84335011839562e-15!GO:0017076;purine nucleotide binding;2.64791955873917e-15!GO:0030163;protein catabolic process;3.16414775811277e-15!GO:0006605;protein targeting;3.69563614654484e-15!GO:0008135;translation factor activity, nucleic acid binding;4.42222215693334e-15!GO:0009057;macromolecule catabolic process;5.94442348944385e-15!GO:0007049;cell cycle;6.79530270850746e-15!GO:0051082;unfolded protein binding;7.20979180104441e-15!GO:0003676;nucleic acid binding;1.29293436794059e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.92971485244107e-14!GO:0005761;mitochondrial ribosome;3.25101149869974e-14!GO:0000313;organellar ribosome;3.25101149869974e-14!GO:0050136;NADH dehydrogenase (quinone) activity;3.4420315389811e-14!GO:0003954;NADH dehydrogenase activity;3.4420315389811e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;3.4420315389811e-14!GO:0044248;cellular catabolic process;8.25967846226461e-14!GO:0043412;biopolymer modification;2.4676918134604e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.71981926797563e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.16819043098581e-13!GO:0006732;coenzyme metabolic process;7.18512905960386e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.18970363670021e-13!GO:0005789;endoplasmic reticulum membrane;9.86165016825182e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.42657956553211e-12!GO:0042773;ATP synthesis coupled electron transport;1.42657956553211e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.79270369011709e-12!GO:0045271;respiratory chain complex I;1.79270369011709e-12!GO:0005747;mitochondrial respiratory chain complex I;1.79270369011709e-12!GO:0006464;protein modification process;4.20604480771204e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;4.8655405018296e-12!GO:0000398;nuclear mRNA splicing, via spliceosome;1.35780119737787e-11!GO:0000375;RNA splicing, via transesterification reactions;1.35780119737787e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.35780119737787e-11!GO:0042254;ribosome biogenesis and assembly;1.35780119737787e-11!GO:0005524;ATP binding;1.52051676895043e-11!GO:0003743;translation initiation factor activity;1.56069994145267e-11!GO:0016070;RNA metabolic process;1.69974303753404e-11!GO:0019787;small conjugating protein ligase activity;1.70274062979401e-11!GO:0008639;small protein conjugating enzyme activity;2.08000524765264e-11!GO:0005793;ER-Golgi intermediate compartment;2.09556167106712e-11!GO:0009259;ribonucleotide metabolic process;2.85839939129432e-11!GO:0032559;adenyl ribonucleotide binding;3.08360715262716e-11!GO:0000278;mitotic cell cycle;3.27257511736431e-11!GO:0004842;ubiquitin-protein ligase activity;3.27257511736431e-11!GO:0003712;transcription cofactor activity;3.5906902211487e-11!GO:0006413;translational initiation;4.81302757894942e-11!GO:0022402;cell cycle process;5.98708097874937e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.5652942203972e-11!GO:0006974;response to DNA damage stimulus;6.72384106136462e-11!GO:0030554;adenyl nucleotide binding;9.99646532206637e-11!GO:0006163;purine nucleotide metabolic process;1.47263151312352e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.7444678886037e-10!GO:0009055;electron carrier activity;1.79963814653095e-10!GO:0009150;purine ribonucleotide metabolic process;2.04913357957932e-10!GO:0043687;post-translational protein modification;2.09340952667617e-10!GO:0008565;protein transporter activity;2.17758038509611e-10!GO:0031965;nuclear membrane;3.09824714288554e-10!GO:0016881;acid-amino acid ligase activity;3.28618074382886e-10!GO:0009199;ribonucleoside triphosphate metabolic process;5.95086784635862e-10!GO:0006446;regulation of translational initiation;6.18322934805294e-10!GO:0009260;ribonucleotide biosynthetic process;7.95898741267714e-10!GO:0016604;nuclear body;8.26683310282421e-10!GO:0012501;programmed cell death;8.60862164609107e-10!GO:0016887;ATPase activity;9.45850601730688e-10!GO:0005635;nuclear envelope;1.14788559861551e-09!GO:0009141;nucleoside triphosphate metabolic process;1.27451394775071e-09!GO:0042623;ATPase activity, coupled;1.27451394775071e-09!GO:0006164;purine nucleotide biosynthetic process;1.31097810628137e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.36198764379757e-09!GO:0044453;nuclear membrane part;1.45330772583327e-09!GO:0005768;endosome;1.48309184855777e-09!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.53588836081223e-09!GO:0009144;purine nucleoside triphosphate metabolic process;1.53588836081223e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.77060682165735e-09!GO:0006915;apoptosis;1.85510497046064e-09!GO:0006913;nucleocytoplasmic transport;1.93905935684581e-09!GO:0006461;protein complex assembly;2.33808237690005e-09!GO:0006399;tRNA metabolic process;2.50652204037401e-09!GO:0009142;nucleoside triphosphate biosynthetic process;2.7336797653536e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.7336797653536e-09!GO:0003924;GTPase activity;3.22484462339332e-09!GO:0051169;nuclear transport;3.84803890175718e-09!GO:0015986;ATP synthesis coupled proton transport;4.57741947224856e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.57741947224856e-09!GO:0009056;catabolic process;4.84336515738668e-09!GO:0030120;vesicle coat;6.13921828446619e-09!GO:0030662;coated vesicle membrane;6.13921828446619e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;7.29232638386382e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;7.29232638386382e-09!GO:0051246;regulation of protein metabolic process;1.05291403135207e-08!GO:0008219;cell death;1.20510786440408e-08!GO:0016265;death;1.20510786440408e-08!GO:0046034;ATP metabolic process;1.35240406701282e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.79964898800733e-08!GO:0006281;DNA repair;1.81120965005701e-08!GO:0009060;aerobic respiration;2.14988802772468e-08!GO:0019829;cation-transporting ATPase activity;2.31474712316324e-08!GO:0015078;hydrogen ion transmembrane transporter activity;2.87374543516132e-08!GO:0005788;endoplasmic reticulum lumen;3.37905766800618e-08!GO:0045333;cellular respiration;3.48389454236237e-08!GO:0048475;coated membrane;3.51572009695585e-08!GO:0030117;membrane coat;3.51572009695585e-08!GO:0051188;cofactor biosynthetic process;3.54959300080117e-08!GO:0065002;intracellular protein transport across a membrane;3.60077333784502e-08!GO:0048523;negative regulation of cellular process;3.92800101687066e-08!GO:0006325;establishment and/or maintenance of chromatin architecture;4.54098138447517e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.24568283623991e-08!GO:0004812;aminoacyl-tRNA ligase activity;5.24568283623991e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.24568283623991e-08!GO:0006754;ATP biosynthetic process;5.33302779154452e-08!GO:0006753;nucleoside phosphate metabolic process;5.33302779154452e-08!GO:0016607;nuclear speck;5.38381908028651e-08!GO:0007005;mitochondrion organization and biogenesis;6.01061410394176e-08!GO:0044431;Golgi apparatus part;7.98272934425311e-08!GO:0009719;response to endogenous stimulus;7.9953147075802e-08!GO:0043038;amino acid activation;8.11922550937299e-08!GO:0006418;tRNA aminoacylation for protein translation;8.11922550937299e-08!GO:0043039;tRNA aminoacylation;8.11922550937299e-08!GO:0005643;nuclear pore;8.78486866153502e-08!GO:0016469;proton-transporting two-sector ATPase complex;9.08551393107353e-08!GO:0051276;chromosome organization and biogenesis;9.63437768102561e-08!GO:0017038;protein import;9.99723243472735e-08!GO:0006323;DNA packaging;1.22325260684482e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.5085261040865e-07!GO:0005525;GTP binding;1.89939574384094e-07!GO:0051726;regulation of cell cycle;2.38630343859483e-07!GO:0000087;M phase of mitotic cell cycle;2.57336580816307e-07!GO:0000074;regulation of progression through cell cycle;2.59486198014035e-07!GO:0051187;cofactor catabolic process;2.60827033070804e-07!GO:0006099;tricarboxylic acid cycle;3.10620339843854e-07!GO:0046356;acetyl-CoA catabolic process;3.10620339843854e-07!GO:0006364;rRNA processing;3.17708534265359e-07!GO:0007067;mitosis;3.22733878167074e-07!GO:0004386;helicase activity;3.33771400790445e-07!GO:0005773;vacuole;4.04836104635956e-07!GO:0032446;protein modification by small protein conjugation;4.05590931471068e-07!GO:0044440;endosomal part;4.26694211688977e-07!GO:0010008;endosome membrane;4.26694211688977e-07!GO:0030532;small nuclear ribonucleoprotein complex;4.42910317502471e-07!GO:0009109;coenzyme catabolic process;4.9148145279875e-07!GO:0006366;transcription from RNA polymerase II promoter;5.00294755457582e-07!GO:0016072;rRNA metabolic process;5.0920375434421e-07!GO:0016567;protein ubiquitination;5.98963270303018e-07!GO:0005798;Golgi-associated vesicle;6.37636128361282e-07!GO:0008026;ATP-dependent helicase activity;7.16809991176454e-07!GO:0005694;chromosome;7.35048859324211e-07!GO:0046930;pore complex;7.43023720949455e-07!GO:0006752;group transfer coenzyme metabolic process;8.52216109773775e-07!GO:0065004;protein-DNA complex assembly;8.69918200601333e-07!GO:0015630;microtubule cytoskeleton;9.52200070531152e-07!GO:0006084;acetyl-CoA metabolic process;9.63756927714933e-07!GO:0022403;cell cycle phase;9.87111734549645e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.07970221314023e-06!GO:0000151;ubiquitin ligase complex;1.19526019251003e-06!GO:0048519;negative regulation of biological process;1.21489981235322e-06!GO:0050657;nucleic acid transport;1.48013636910416e-06!GO:0051236;establishment of RNA localization;1.48013636910416e-06!GO:0050658;RNA transport;1.48013636910416e-06!GO:0006403;RNA localization;1.49513563120784e-06!GO:0009117;nucleotide metabolic process;1.63370077040211e-06!GO:0005770;late endosome;1.65415988216558e-06!GO:0009108;coenzyme biosynthetic process;1.67102235483291e-06!GO:0008654;phospholipid biosynthetic process;1.67102235483291e-06!GO:0032561;guanyl ribonucleotide binding;1.67102235483291e-06!GO:0019001;guanyl nucleotide binding;1.67102235483291e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.70833553431011e-06!GO:0008361;regulation of cell size;1.80994706778675e-06!GO:0031988;membrane-bound vesicle;1.94286581043321e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.96686440086317e-06!GO:0051301;cell division;1.99581131502345e-06!GO:0006260;DNA replication;2.25472536032817e-06!GO:0045259;proton-transporting ATP synthase complex;2.39448195633144e-06!GO:0031252;leading edge;2.64899290929485e-06!GO:0003714;transcription corepressor activity;2.67726907301141e-06!GO:0016049;cell growth;3.1609992890178e-06!GO:0043067;regulation of programmed cell death;3.17839526053882e-06!GO:0016787;hydrolase activity;3.88478254364833e-06!GO:0043069;negative regulation of programmed cell death;4.17684075815959e-06!GO:0042981;regulation of apoptosis;4.29515226060795e-06!GO:0005667;transcription factor complex;4.61333537190172e-06!GO:0016491;oxidoreductase activity;4.92651421799722e-06!GO:0005839;proteasome core complex (sensu Eukaryota);5.43343911388987e-06!GO:0006613;cotranslational protein targeting to membrane;5.70284563203353e-06!GO:0006333;chromatin assembly or disassembly;6.10919823634606e-06!GO:0031982;vesicle;7.82363873867614e-06!GO:0000323;lytic vacuole;8.09458180565897e-06!GO:0005764;lysosome;8.09458180565897e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.35332170082254e-06!GO:0031410;cytoplasmic vesicle;8.88473752310589e-06!GO:0016740;transferase activity;9.38544957288222e-06!GO:0044427;chromosomal part;1.02689647001082e-05!GO:0050794;regulation of cellular process;1.03532149633418e-05!GO:0000139;Golgi membrane;1.07615962498451e-05!GO:0043066;negative regulation of apoptosis;1.1104959159576e-05!GO:0007010;cytoskeleton organization and biogenesis;1.24079216349701e-05!GO:0051789;response to protein stimulus;1.24952874765556e-05!GO:0006986;response to unfolded protein;1.24952874765556e-05!GO:0043566;structure-specific DNA binding;1.33577041467344e-05!GO:0045454;cell redox homeostasis;1.38013326696024e-05!GO:0045786;negative regulation of progression through cell cycle;1.45194548024963e-05!GO:0000245;spliceosome assembly;1.48713513445e-05!GO:0043623;cellular protein complex assembly;1.72589325151305e-05!GO:0003713;transcription coactivator activity;1.82948014730859e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.93444913137244e-05!GO:0051170;nuclear import;2.09389855369212e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;2.09896851497266e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.22214712604547e-05!GO:0015980;energy derivation by oxidation of organic compounds;2.25768994136308e-05!GO:0006793;phosphorus metabolic process;2.34003748898278e-05!GO:0006796;phosphate metabolic process;2.34003748898278e-05!GO:0004298;threonine endopeptidase activity;2.50586538414857e-05!GO:0006916;anti-apoptosis;2.55672426841112e-05!GO:0016853;isomerase activity;2.58538117114969e-05!GO:0003697;single-stranded DNA binding;2.87902286616362e-05!GO:0005762;mitochondrial large ribosomal subunit;2.89340719660741e-05!GO:0000315;organellar large ribosomal subunit;2.89340719660741e-05!GO:0001558;regulation of cell growth;2.9374900243372e-05!GO:0005905;coated pit;3.18558671181589e-05!GO:0030867;rough endoplasmic reticulum membrane;3.28075242285024e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.47483871521391e-05!GO:0030036;actin cytoskeleton organization and biogenesis;3.52446420525294e-05!GO:0016310;phosphorylation;3.82388162142332e-05!GO:0019899;enzyme binding;3.825824587966e-05!GO:0000785;chromatin;3.8710927039686e-05!GO:0016568;chromatin modification;3.8710927039686e-05!GO:0006606;protein import into nucleus;3.89044934550967e-05!GO:0016564;transcription repressor activity;3.95402443035841e-05!GO:0031968;organelle outer membrane;4.09822934766774e-05!GO:0019867;outer membrane;4.28950737139042e-05!GO:0051028;mRNA transport;4.38557322711721e-05!GO:0008092;cytoskeletal protein binding;4.62746668965268e-05!GO:0016563;transcription activator activity;4.8607085028744e-05!GO:0030133;transport vesicle;4.86595361507606e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;5.45729159919805e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;6.08544834901029e-05!GO:0016779;nucleotidyltransferase activity;6.26274421539036e-05!GO:0016859;cis-trans isomerase activity;6.66211349619043e-05!GO:0046474;glycerophospholipid biosynthetic process;6.84541820291396e-05!GO:0033116;ER-Golgi intermediate compartment membrane;7.43139672668159e-05!GO:0005813;centrosome;7.73034632950141e-05!GO:0043021;ribonucleoprotein binding;7.73874123175108e-05!GO:0003724;RNA helicase activity;8.34479412311351e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;8.49217122206742e-05!GO:0015399;primary active transmembrane transporter activity;8.49217122206742e-05!GO:0005769;early endosome;8.5356730072558e-05!GO:0006334;nucleosome assembly;0.000125170494418557!GO:0051329;interphase of mitotic cell cycle;0.000125253207845466!GO:0016044;membrane organization and biogenesis;0.000135485660730433!GO:0000279;M phase;0.000135627755577266!GO:0051427;hormone receptor binding;0.000139143561685738!GO:0000314;organellar small ribosomal subunit;0.000156493462542163!GO:0005763;mitochondrial small ribosomal subunit;0.000156493462542163!GO:0031324;negative regulation of cellular metabolic process;0.000176256616030122!GO:0005815;microtubule organizing center;0.000180264462244842!GO:0044262;cellular carbohydrate metabolic process;0.000184562854895825!GO:0006091;generation of precursor metabolites and energy;0.000187984597499433!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000206197372714555!GO:0005741;mitochondrial outer membrane;0.000211863737902731!GO:0005048;signal sequence binding;0.000211863737902731!GO:0030029;actin filament-based process;0.000217796922171292!GO:0030663;COPI coated vesicle membrane;0.000222290892574686!GO:0030126;COPI vesicle coat;0.000222290892574686!GO:0006612;protein targeting to membrane;0.000228572092512806!GO:0005885;Arp2/3 protein complex;0.000237836289390139!GO:0035257;nuclear hormone receptor binding;0.000280974554319083!GO:0031497;chromatin assembly;0.000290266111520928!GO:0016197;endosome transport;0.000320017344572559!GO:0008250;oligosaccharyl transferase complex;0.000338644697779903!GO:0007264;small GTPase mediated signal transduction;0.000343954731251792!GO:0006839;mitochondrial transport;0.000348835222124546!GO:0051325;interphase;0.000362656157517834!GO:0009892;negative regulation of metabolic process;0.000369257989900312!GO:0006891;intra-Golgi vesicle-mediated transport;0.000381639730485355!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000398950669861556!GO:0003899;DNA-directed RNA polymerase activity;0.000401392065898304!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000410871489293738!GO:0004576;oligosaccharyl transferase activity;0.000474878362280334!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000480716321975499!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000480716321975499!GO:0006626;protein targeting to mitochondrion;0.000494487054970474!GO:0050789;regulation of biological process;0.000532415229477405!GO:0031072;heat shock protein binding;0.000537825812426985!GO:0016363;nuclear matrix;0.000606320913153838!GO:0015992;proton transport;0.000679640055537424!GO:0030137;COPI-coated vesicle;0.000685797604521996!GO:0009165;nucleotide biosynthetic process;0.000713774801011302!GO:0007006;mitochondrial membrane organization and biogenesis;0.00071654593972631!GO:0030658;transport vesicle membrane;0.000762571460385477!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000777968742715418!GO:0006818;hydrogen transport;0.000779951205627184!GO:0005791;rough endoplasmic reticulum;0.000779951205627184!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.000782407812463928!GO:0040008;regulation of growth;0.000818734904996563!GO:0051920;peroxiredoxin activity;0.000889477613550533!GO:0007243;protein kinase cascade;0.000908276096925831!GO:0007050;cell cycle arrest;0.000909890204673539!GO:0018196;peptidyl-asparagine modification;0.00091797704987632!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00091797704987632!GO:0045045;secretory pathway;0.000952066872899027!GO:0051168;nuclear export;0.000959849362473938!GO:0046489;phosphoinositide biosynthetic process;0.000966237970901136!GO:0046467;membrane lipid biosynthetic process;0.000973838331973632!GO:0006650;glycerophospholipid metabolic process;0.00105295258125197!GO:0048471;perinuclear region of cytoplasm;0.00107253803949284!GO:0043681;protein import into mitochondrion;0.00108826135355387!GO:0006383;transcription from RNA polymerase III promoter;0.00116407664205405!GO:0051128;regulation of cellular component organization and biogenesis;0.00121972635893177!GO:0065009;regulation of a molecular function;0.00137039637469528!GO:0005819;spindle;0.0014742831088804!GO:0048522;positive regulation of cellular process;0.00151634662788807!GO:0048500;signal recognition particle;0.00154982210868819!GO:0008186;RNA-dependent ATPase activity;0.00155013921857737!GO:0022890;inorganic cation transmembrane transporter activity;0.00157809261741968!GO:0043492;ATPase activity, coupled to movement of substances;0.00159176969444894!GO:0030118;clathrin coat;0.00159565704652967!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00162052556334559!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00162052556334559!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00162052556334559!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00163467473550366!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00171540393118086!GO:0030660;Golgi-associated vesicle membrane;0.00183359692521529!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0018602152299386!GO:0051252;regulation of RNA metabolic process;0.00186531123659641!GO:0019843;rRNA binding;0.00189293354987896!GO:0006414;translational elongation;0.00190079200309157!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00191876148691158!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00213629791211385!GO:0043284;biopolymer biosynthetic process;0.00225418762938346!GO:0030132;clathrin coat of coated pit;0.00237887362036674!GO:0003729;mRNA binding;0.00248980984441572!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00266870084464022!GO:0016126;sterol biosynthetic process;0.00272939991094305!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00289159892582048!GO:0045047;protein targeting to ER;0.00289159892582048!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00307294152880617!GO:0015631;tubulin binding;0.00316845770103779!GO:0000059;protein import into nucleus, docking;0.00316963013944268!GO:0030027;lamellipodium;0.00328603962578718!GO:0030134;ER to Golgi transport vesicle;0.00331641969489568!GO:0001726;ruffle;0.003355329721005!GO:0042802;identical protein binding;0.00341077323644634!GO:0006497;protein amino acid lipidation;0.00346618481477802!GO:0031543;peptidyl-proline dioxygenase activity;0.00346752455735002!GO:0051087;chaperone binding;0.00356161834552022!GO:0003690;double-stranded DNA binding;0.00370813003530773!GO:0004004;ATP-dependent RNA helicase activity;0.00383384010323082!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00387263598762635!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00387263598762635!GO:0044452;nucleolar part;0.00390678948588575!GO:0008033;tRNA processing;0.00390678948588575!GO:0031902;late endosome membrane;0.003972206248082!GO:0005774;vacuolar membrane;0.00409806509506122!GO:0008312;7S RNA binding;0.00409806509506122!GO:0007040;lysosome organization and biogenesis;0.00410369963845963!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0041636232403657!GO:0006352;transcription initiation;0.00425982571617313!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00441373837768123!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0044820675756343!GO:0042158;lipoprotein biosynthetic process;0.00452212816622763!GO:0008180;signalosome;0.00453435945367957!GO:0000082;G1/S transition of mitotic cell cycle;0.00457497592554002!GO:0000075;cell cycle checkpoint;0.00457774318752996!GO:0048487;beta-tubulin binding;0.00466603235143199!GO:0030127;COPII vesicle coat;0.00475059982786388!GO:0012507;ER to Golgi transport vesicle membrane;0.00475059982786388!GO:0006892;post-Golgi vesicle-mediated transport;0.00498050161062584!GO:0030521;androgen receptor signaling pathway;0.00510428597831619!GO:0019798;procollagen-proline dioxygenase activity;0.00516067762229318!GO:0005581;collagen;0.00516067762229318!GO:0003746;translation elongation factor activity;0.00516067762229318!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00536433724869459!GO:0030880;RNA polymerase complex;0.0055774102204082!GO:0046483;heterocycle metabolic process;0.00564088519948364!GO:0017166;vinculin binding;0.00568111197917487!GO:0000049;tRNA binding;0.00579762917044751!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00582045361993563!GO:0016272;prefoldin complex;0.00593413450211043!GO:0003711;transcription elongation regulator activity;0.00593452800873983!GO:0005869;dynactin complex;0.0060757694805612!GO:0000287;magnesium ion binding;0.00618025116190256!GO:0030176;integral to endoplasmic reticulum membrane;0.00625543687044995!GO:0035258;steroid hormone receptor binding;0.00625543687044995!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00625548941490591!GO:0006595;polyamine metabolic process;0.00632346076981397!GO:0007034;vacuolar transport;0.0064227841372213!GO:0031418;L-ascorbic acid binding;0.00670781009626342!GO:0008047;enzyme activator activity;0.00689052482520537!GO:0030659;cytoplasmic vesicle membrane;0.00712205318475964!GO:0016408;C-acyltransferase activity;0.00716490177902246!GO:0030125;clathrin vesicle coat;0.00718927455177527!GO:0030665;clathrin coated vesicle membrane;0.00718927455177527!GO:0019222;regulation of metabolic process;0.00720715950071452!GO:0005874;microtubule;0.00722993518072396!GO:0032940;secretion by cell;0.00743596446892178!GO:0000096;sulfur amino acid metabolic process;0.00756739482093304!GO:0008632;apoptotic program;0.00763119111250317!GO:0005684;U2-dependent spliceosome;0.00789357266964614!GO:0030119;AP-type membrane coat adaptor complex;0.00797365703995511!GO:0007033;vacuole organization and biogenesis;0.00810666761600274!GO:0016481;negative regulation of transcription;0.00825730083994271!GO:0006695;cholesterol biosynthetic process;0.00840677968529496!GO:0016251;general RNA polymerase II transcription factor activity;0.00856462247586297!GO:0007021;tubulin folding;0.00861969097422481!GO:0006509;membrane protein ectodomain proteolysis;0.00861969097422481!GO:0033619;membrane protein proteolysis;0.00861969097422481!GO:0030384;phosphoinositide metabolic process;0.00870636741446521!GO:0008139;nuclear localization sequence binding;0.0091735488243664!GO:0051287;NAD binding;0.00947189391734896!GO:0044437;vacuolar part;0.00993521477293075!GO:0043022;ribosome binding;0.0100438402758118!GO:0005862;muscle thin filament tropomyosin;0.0101635999831366!GO:0043433;negative regulation of transcription factor activity;0.0102527263688841!GO:0000339;RNA cap binding;0.0103800211629191!GO:0044433;cytoplasmic vesicle part;0.0104014551148755!GO:0046519;sphingoid metabolic process;0.0104605915849574!GO:0006261;DNA-dependent DNA replication;0.0106356062928819!GO:0051540;metal cluster binding;0.0110335243438077!GO:0051536;iron-sulfur cluster binding;0.0110335243438077!GO:0008022;protein C-terminus binding;0.0112455543911525!GO:0003682;chromatin binding;0.0112644754579799!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0113543333870283!GO:0000428;DNA-directed RNA polymerase complex;0.0113543333870283!GO:0008154;actin polymerization and/or depolymerization;0.0115044629448657!GO:0045936;negative regulation of phosphate metabolic process;0.0116068463603101!GO:0000209;protein polyubiquitination;0.0118243864337947!GO:0008652;amino acid biosynthetic process;0.0119292190264562!GO:0006506;GPI anchor biosynthetic process;0.0121060852337651!GO:0043488;regulation of mRNA stability;0.0124399162889287!GO:0043487;regulation of RNA stability;0.0124399162889287!GO:0051539;4 iron, 4 sulfur cluster binding;0.0127058994626722!GO:0005096;GTPase activator activity;0.0127649002116131!GO:0007265;Ras protein signal transduction;0.0127979410990773!GO:0005583;fibrillar collagen;0.0130053314002133!GO:0031625;ubiquitin protein ligase binding;0.0138048713426825!GO:0019752;carboxylic acid metabolic process;0.0139445348476658!GO:0006082;organic acid metabolic process;0.0142968130275346!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0143643647532827!GO:0030131;clathrin adaptor complex;0.0143643647532827!GO:0008610;lipid biosynthetic process;0.0144250202418493!GO:0005832;chaperonin-containing T-complex;0.0147487107547716!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0147487107547716!GO:0015002;heme-copper terminal oxidase activity;0.0147487107547716!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0147487107547716!GO:0004129;cytochrome-c oxidase activity;0.0147487107547716!GO:0050681;androgen receptor binding;0.0153202345486398!GO:0031124;mRNA 3'-end processing;0.0154008118942458!GO:0033673;negative regulation of kinase activity;0.0154008118942458!GO:0006469;negative regulation of protein kinase activity;0.0154008118942458!GO:0004177;aminopeptidase activity;0.0154008118942458!GO:0006778;porphyrin metabolic process;0.0154008118942458!GO:0033013;tetrapyrrole metabolic process;0.0154008118942458!GO:0051348;negative regulation of transferase activity;0.0155209578712573!GO:0007030;Golgi organization and biogenesis;0.0155225751379862!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0161315354223817!GO:0033043;regulation of organelle organization and biogenesis;0.0161315354223817!GO:0003684;damaged DNA binding;0.0162581930441314!GO:0006505;GPI anchor metabolic process;0.0163331088677413!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0164044308909082!GO:0006354;RNA elongation;0.0165025004485211!GO:0005765;lysosomal membrane;0.016575027105834!GO:0006402;mRNA catabolic process;0.0167936540481611!GO:0044420;extracellular matrix part;0.0168630759904305!GO:0031901;early endosome membrane;0.0168630759904305!GO:0006897;endocytosis;0.0168885045434797!GO:0010324;membrane invagination;0.0168885045434797!GO:0007041;lysosomal transport;0.017172058422178!GO:0006672;ceramide metabolic process;0.0173636182774489!GO:0006518;peptide metabolic process;0.0174584283994244!GO:0051098;regulation of binding;0.0174623754002716!GO:0030041;actin filament polymerization;0.0175080791111339!GO:0006979;response to oxidative stress;0.017585137659949!GO:0045941;positive regulation of transcription;0.0176129690526484!GO:0030145;manganese ion binding;0.0176289325993581!GO:0009967;positive regulation of signal transduction;0.0180117367536936!GO:0006611;protein export from nucleus;0.0183171225557347!GO:0007051;spindle organization and biogenesis;0.0184987284317063!GO:0031529;ruffle organization and biogenesis;0.0187097126095822!GO:0003779;actin binding;0.0191660641519973!GO:0003756;protein disulfide isomerase activity;0.0195086356151821!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0195086356151821!GO:0022884;macromolecule transmembrane transporter activity;0.0196312178379399!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0196312178379399!GO:0008320;protein transmembrane transporter activity;0.019694807688478!GO:0050811;GABA receptor binding;0.0198807181836548!GO:0006740;NADPH regeneration;0.0198807181836548!GO:0006098;pentose-phosphate shunt;0.0198807181836548!GO:0045792;negative regulation of cell size;0.0200173721552367!GO:0012506;vesicle membrane;0.0200181192716149!GO:0004674;protein serine/threonine kinase activity;0.0201045726973908!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0202823340367295!GO:0006302;double-strand break repair;0.0204953519344442!GO:0007093;mitotic cell cycle checkpoint;0.0208024346794611!GO:0006289;nucleotide-excision repair;0.0213150909997739!GO:0030032;lamellipodium biogenesis;0.0216379311390494!GO:0006643;membrane lipid metabolic process;0.0219478165783787!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0219634006851811!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0221442263186313!GO:0033559;unsaturated fatty acid metabolic process;0.0225143604027702!GO:0006636;unsaturated fatty acid biosynthetic process;0.0225143604027702!GO:0007160;cell-matrix adhesion;0.0225869112450959!GO:0008287;protein serine/threonine phosphatase complex;0.0229091644824143!GO:0050662;coenzyme binding;0.0230426654913088!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0231665703073045!GO:0030518;steroid hormone receptor signaling pathway;0.0231665703073045!GO:0031123;RNA 3'-end processing;0.0232416291193625!GO:0035035;histone acetyltransferase binding;0.0232416291193625!GO:0051052;regulation of DNA metabolic process;0.0233595821930259!GO:0031589;cell-substrate adhesion;0.0233757437297101!GO:0006520;amino acid metabolic process;0.0235644112920466!GO:0042326;negative regulation of phosphorylation;0.0236961526573628!GO:0050790;regulation of catalytic activity;0.0240258947185679!GO:0030308;negative regulation of cell growth;0.0244864463954715!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0247719622052979!GO:0006007;glucose catabolic process;0.0247823280237762!GO:0030503;regulation of cell redox homeostasis;0.0247823280237762!GO:0005801;cis-Golgi network;0.0256435205270293!GO:0006607;NLS-bearing substrate import into nucleus;0.025764483421464!GO:0030833;regulation of actin filament polymerization;0.0259524396836625!GO:0001952;regulation of cell-matrix adhesion;0.0260674685167589!GO:0009225;nucleotide-sugar metabolic process;0.0261850738345098!GO:0003678;DNA helicase activity;0.0264449219031024!GO:0004722;protein serine/threonine phosphatase activity;0.0265006165717017!GO:0045893;positive regulation of transcription, DNA-dependent;0.0266125168018672!GO:0030508;thiol-disulfide exchange intermediate activity;0.0266298117154071!GO:0005938;cell cortex;0.0270372564085043!GO:0000776;kinetochore;0.0271078330786245!GO:0042168;heme metabolic process;0.0271868290360861!GO:0022408;negative regulation of cell-cell adhesion;0.0282280904159028!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0286823923167033!GO:0048144;fibroblast proliferation;0.0289056813277193!GO:0048145;regulation of fibroblast proliferation;0.0289056813277193!GO:0006644;phospholipid metabolic process;0.0289056813277193!GO:0005669;transcription factor TFIID complex;0.02891882208389!GO:0006405;RNA export from nucleus;0.0291152642815698!GO:0008538;proteasome activator activity;0.030397643836677!GO:0001527;microfibril;0.030623106203586!GO:0032906;transforming growth factor-beta2 production;0.0308027935146592!GO:0032909;regulation of transforming growth factor-beta2 production;0.0308027935146592!GO:0016407;acetyltransferase activity;0.0308383165975978!GO:0051716;cellular response to stimulus;0.0316518220949167!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0322610130974818!GO:0005758;mitochondrial intermembrane space;0.0327415463712334!GO:0008147;structural constituent of bone;0.0327494708147995!GO:0030149;sphingolipid catabolic process;0.0327602440079735!GO:0032984;macromolecular complex disassembly;0.0328893497320525!GO:0005099;Ras GTPase activator activity;0.0330234124281602!GO:0006401;RNA catabolic process;0.0330234124281602!GO:0008168;methyltransferase activity;0.0336616900498236!GO:0000786;nucleosome;0.0336616900498236!GO:0043087;regulation of GTPase activity;0.0337093367208902!GO:0048146;positive regulation of fibroblast proliferation;0.033974809890958!GO:0031371;ubiquitin conjugating enzyme complex;0.0341303525227608!GO:0006984;ER-nuclear signaling pathway;0.0351146295911715!GO:0043624;cellular protein complex disassembly;0.0353016961559238!GO:0016741;transferase activity, transferring one-carbon groups;0.035437039757368!GO:0006807;nitrogen compound metabolic process;0.035437039757368!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0364595977651563!GO:0006417;regulation of translation;0.0365663382316244!GO:0006779;porphyrin biosynthetic process;0.0365663382316244!GO:0033014;tetrapyrrole biosynthetic process;0.0365663382316244!GO:0006144;purine base metabolic process;0.036706790346398!GO:0005100;Rho GTPase activator activity;0.0369694219687862!GO:0031575;G1/S transition checkpoint;0.0369694219687862!GO:0003923;GPI-anchor transamidase activity;0.0371292873269577!GO:0016255;attachment of GPI anchor to protein;0.0371292873269577!GO:0042765;GPI-anchor transamidase complex;0.0371292873269577!GO:0005520;insulin-like growth factor binding;0.0380089697588305!GO:0005586;collagen type III;0.0392399154390105!GO:0051101;regulation of DNA binding;0.0393759737416205!GO:0006739;NADP metabolic process;0.0401889589953661!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0403420401018648!GO:0016584;nucleosome positioning;0.0408404620247474!GO:0005637;nuclear inner membrane;0.0409325256258481!GO:0048518;positive regulation of biological process;0.0410081056786703!GO:0030140;trans-Golgi network transport vesicle;0.0413367157528192!GO:0048468;cell development;0.041349945270304!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0429469209497503!GO:0030911;TPR domain binding;0.0431857547816787!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0432604377865571!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0432604377865571!GO:0009308;amine metabolic process;0.0435493149474163!GO:0031970;organelle envelope lumen;0.0446440313875033!GO:0000097;sulfur amino acid biosynthetic process;0.0460818231389982!GO:0051775;response to redox state;0.0465715274997095!GO:0006980;redox signal response;0.0465715274997095!GO:0008234;cysteine-type peptidase activity;0.0465715274997095!GO:0006564;L-serine biosynthetic process;0.046641892013943!GO:0047485;protein N-terminus binding;0.0467271386157726!GO:0030433;ER-associated protein catabolic process;0.0472226476073534!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0472226476073534!GO:0051336;regulation of hydrolase activity;0.0473543308268132!GO:0005784;translocon complex;0.048045989250514!GO:0006376;mRNA splice site selection;0.0482967138564434!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0482967138564434
 
|sample_id=11549
 
|sample_id=11549
 
|sample_note=
 
|sample_note=
Line 76: Line 105:
 
|sample_tissue=umbilical cord
 
|sample_tissue=umbilical cord
 
|top_motifs=HMGA1,2:1.66184916461;IKZF1:1.54733124096;NKX3-1:1.47046998171;ZIC1..3:1.24806920947;MYBL2:1.24502300039;NR3C1:1.22467291826;HES1:1.22119182884;GLI1..3:1.18462139717;TAL1_TCF{3,4,12}:1.14726439531;NFE2L1:1.10674838686;GTF2A1,2:1.08913496563;UFEwm:1.07914780032;EVI1:1.05813127575;MAFB:1.05423588814;PPARG:1.05194143101;TEAD1:1.03473751579;SRF:1.02916860462;NKX2-2,8:0.99525593075;ONECUT1,2:0.98087354021;TEF:0.928565957373;ALX4:0.832582924933;HOX{A5,B5}:0.831201671534;ZBTB6:0.798181934334;LHX3,4:0.74944122043;AIRE:0.738762602787;FOXL1:0.708214868225;EN1,2:0.682293115374;NFATC1..3:0.671927048483;NKX3-2:0.631383568276;ESR1:0.620876566018;HIF1A:0.610996898121;TP53:0.604569709592;GFI1B:0.588877788999;SMAD1..7,9:0.577034425548;HMX1:0.564399337869;ZNF423:0.559042620404;STAT5{A,B}:0.557029147454;TFCP2:0.555173733443;PRDM1:0.547319266437;ZNF384:0.544845088595;EBF1:0.542186144861;GZF1:0.538369386962;SOX17:0.536730600499;TLX1..3_NFIC{dimer}:0.524564678792;HOX{A4,D4}:0.523947672612;KLF4:0.510993108632;NFE2L2:0.485627338342;SREBF1,2:0.48238173756;MAZ:0.463027603898;NFIX:0.419131567758;GTF2I:0.414935513808;XBP1:0.405521141836;GATA4:0.404279983916;NRF1:0.386945482659;POU5F1:0.372655484219;TBX4,5:0.365737292212;HSF1,2:0.363955191329;TFAP4:0.3567377052;FOXA2:0.354238640785;HAND1,2:0.332500953637;ZNF148:0.322594232665;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313855993896;MEF2{A,B,C,D}:0.309926042678;MTE{core}:0.300008816477;ATF6:0.294489669171;GCM1,2:0.288013357179;PAX8:0.253389833423;NHLH1,2:0.245737088722;ZNF143:0.241898307955;ELK1,4_GABP{A,B1}:0.219549109657;MZF1:0.212718505466;VSX1,2:0.203438663607;HIC1:0.195393017816;NR6A1:0.195268310549;BACH2:0.17903094124;HLF:0.178017469658;NANOG{mouse}:0.117040917163;PAX4:0.1158926046;LEF1_TCF7_TCF7L1,2:0.0938733200256;MYB:0.06875130486;TOPORS:0.0588735534698;XCPE1{core}:0.0570053909875;SPZ1:0.0535168962786;FOS_FOS{B,L1}_JUN{B,D}:0.0484971398626;HBP1_HMGB_SSRP1_UBTF:0.0478023583919;RXR{A,B,G}:0.0402512762028;CDX1,2,4:0.0260991978973;TFAP2B:0.00760059670965;FOSL2:0.00134117963763;POU6F1:-0.000593383057749;TFAP2{A,C}:-0.00102147343061;CRX:-0.0226214234488;ZFP161:-0.0504346890241;ARID5B:-0.0650289142659;RBPJ:-0.0679081275392;FOXP3:-0.0711431423323;PATZ1:-0.0713538864839;REST:-0.0715011589785;SP1:-0.0717106726614;HNF1A:-0.0720328543259;IKZF2:-0.0769204344673;YY1:-0.082289957367;GFI1:-0.0987522167389;AHR_ARNT_ARNT2:-0.102661605853;RXRA_VDR{dimer}:-0.105356633771;CDC5L:-0.117612649057;bHLH_family:-0.126323932929;FOX{I1,J2}:-0.136173888818;RFX1:-0.13857698963;PAX2:-0.139200639003;TFDP1:-0.143264003914;ZNF238:-0.14967168496;CEBPA,B_DDIT3:-0.156497355109;PAX6:-0.159892428276;SOX2:-0.176185860478;ZBTB16:-0.176457179423;TGIF1:-0.189112658688;POU3F1..4:-0.189942745716;NFE2:-0.191726089795;ESRRA:-0.203640519497;LMO2:-0.23449673498;EP300:-0.236787056923;RREB1:-0.241470313387;ELF1,2,4:-0.258397712826;OCT4_SOX2{dimer}:-0.28924255324;IRF1,2:-0.306106334461;ATF4:-0.310078335869;CREB1:-0.319396952823;MYFfamily:-0.320357128098;NR5A1,2:-0.32107130259;NKX2-1,4:-0.33145853294;NFKB1_REL_RELA:-0.338198736852;PDX1:-0.34793039096;PRRX1,2:-0.370825368386;T:-0.378708516568;POU1F1:-0.380346468979;NFY{A,B,C}:-0.408562961494;EGR1..3:-0.40931594979;FOXD3:-0.411008334552;E2F1..5:-0.411232055887;FOX{F1,F2,J1}:-0.411269341955;DBP:-0.425348226905;GATA6:-0.436206822635;MYOD1:-0.439287527814;NFIL3:-0.439358805349;JUN:-0.440890830993;FOXQ1:-0.442413214741;TBP:-0.442567554945;SOX{8,9,10}:-0.444466123338;SPI1:-0.456216892156;DMAP1_NCOR{1,2}_SMARC:-0.457405486428;FOXM1:-0.465887883887;ETS1,2:-0.477218245866;FOXO1,3,4:-0.486383052615;NKX2-3_NKX2-5:-0.486738953449;SNAI1..3:-0.487449211999;MED-1{core}:-0.498524389459;RUNX1..3:-0.499654405572;ATF2:-0.499941643843;ADNP_IRX_SIX_ZHX:-0.535633647045;IRF7:-0.548635441764;STAT2,4,6:-0.553487766779;SOX5:-0.56842766963;STAT1,3:-0.599592567277;MTF1:-0.609592021092;AR:-0.609618574301;HNF4A_NR2F1,2:-0.612235124849;SPIB:-0.645462374495;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.659809405511;RORA:-0.678615163353;PAX3,7:-0.686712704838;ZEB1:-0.690745276683;BPTF:-0.708161262342;NR1H4:-0.713896381523;ATF5_CREB3:-0.717931862577;RFX2..5_RFXANK_RFXAP:-0.736461403554;NANOG:-0.797849964092;HOXA9_MEIS1:-0.806292883971;FOX{D1,D2}:-0.825844946012;PAX5:-0.830219436729;FOXN1:-0.850713742806;PAX1,9:-0.898969291897;PITX1..3:-0.907694248641;FOXP1:-0.928877076903;CUX2:-0.930821797187;NKX6-1,2:-1.02668617455;BREu{core}:-1.07325871688;POU2F1..3:-1.14049924081;TLX2:-1.14359349875;ALX1:-1.23488842418;PBX1:-1.68975916297;HOX{A6,A7,B6,B7}:-2.0970165174
 
|top_motifs=HMGA1,2:1.66184916461;IKZF1:1.54733124096;NKX3-1:1.47046998171;ZIC1..3:1.24806920947;MYBL2:1.24502300039;NR3C1:1.22467291826;HES1:1.22119182884;GLI1..3:1.18462139717;TAL1_TCF{3,4,12}:1.14726439531;NFE2L1:1.10674838686;GTF2A1,2:1.08913496563;UFEwm:1.07914780032;EVI1:1.05813127575;MAFB:1.05423588814;PPARG:1.05194143101;TEAD1:1.03473751579;SRF:1.02916860462;NKX2-2,8:0.99525593075;ONECUT1,2:0.98087354021;TEF:0.928565957373;ALX4:0.832582924933;HOX{A5,B5}:0.831201671534;ZBTB6:0.798181934334;LHX3,4:0.74944122043;AIRE:0.738762602787;FOXL1:0.708214868225;EN1,2:0.682293115374;NFATC1..3:0.671927048483;NKX3-2:0.631383568276;ESR1:0.620876566018;HIF1A:0.610996898121;TP53:0.604569709592;GFI1B:0.588877788999;SMAD1..7,9:0.577034425548;HMX1:0.564399337869;ZNF423:0.559042620404;STAT5{A,B}:0.557029147454;TFCP2:0.555173733443;PRDM1:0.547319266437;ZNF384:0.544845088595;EBF1:0.542186144861;GZF1:0.538369386962;SOX17:0.536730600499;TLX1..3_NFIC{dimer}:0.524564678792;HOX{A4,D4}:0.523947672612;KLF4:0.510993108632;NFE2L2:0.485627338342;SREBF1,2:0.48238173756;MAZ:0.463027603898;NFIX:0.419131567758;GTF2I:0.414935513808;XBP1:0.405521141836;GATA4:0.404279983916;NRF1:0.386945482659;POU5F1:0.372655484219;TBX4,5:0.365737292212;HSF1,2:0.363955191329;TFAP4:0.3567377052;FOXA2:0.354238640785;HAND1,2:0.332500953637;ZNF148:0.322594232665;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.313855993896;MEF2{A,B,C,D}:0.309926042678;MTE{core}:0.300008816477;ATF6:0.294489669171;GCM1,2:0.288013357179;PAX8:0.253389833423;NHLH1,2:0.245737088722;ZNF143:0.241898307955;ELK1,4_GABP{A,B1}:0.219549109657;MZF1:0.212718505466;VSX1,2:0.203438663607;HIC1:0.195393017816;NR6A1:0.195268310549;BACH2:0.17903094124;HLF:0.178017469658;NANOG{mouse}:0.117040917163;PAX4:0.1158926046;LEF1_TCF7_TCF7L1,2:0.0938733200256;MYB:0.06875130486;TOPORS:0.0588735534698;XCPE1{core}:0.0570053909875;SPZ1:0.0535168962786;FOS_FOS{B,L1}_JUN{B,D}:0.0484971398626;HBP1_HMGB_SSRP1_UBTF:0.0478023583919;RXR{A,B,G}:0.0402512762028;CDX1,2,4:0.0260991978973;TFAP2B:0.00760059670965;FOSL2:0.00134117963763;POU6F1:-0.000593383057749;TFAP2{A,C}:-0.00102147343061;CRX:-0.0226214234488;ZFP161:-0.0504346890241;ARID5B:-0.0650289142659;RBPJ:-0.0679081275392;FOXP3:-0.0711431423323;PATZ1:-0.0713538864839;REST:-0.0715011589785;SP1:-0.0717106726614;HNF1A:-0.0720328543259;IKZF2:-0.0769204344673;YY1:-0.082289957367;GFI1:-0.0987522167389;AHR_ARNT_ARNT2:-0.102661605853;RXRA_VDR{dimer}:-0.105356633771;CDC5L:-0.117612649057;bHLH_family:-0.126323932929;FOX{I1,J2}:-0.136173888818;RFX1:-0.13857698963;PAX2:-0.139200639003;TFDP1:-0.143264003914;ZNF238:-0.14967168496;CEBPA,B_DDIT3:-0.156497355109;PAX6:-0.159892428276;SOX2:-0.176185860478;ZBTB16:-0.176457179423;TGIF1:-0.189112658688;POU3F1..4:-0.189942745716;NFE2:-0.191726089795;ESRRA:-0.203640519497;LMO2:-0.23449673498;EP300:-0.236787056923;RREB1:-0.241470313387;ELF1,2,4:-0.258397712826;OCT4_SOX2{dimer}:-0.28924255324;IRF1,2:-0.306106334461;ATF4:-0.310078335869;CREB1:-0.319396952823;MYFfamily:-0.320357128098;NR5A1,2:-0.32107130259;NKX2-1,4:-0.33145853294;NFKB1_REL_RELA:-0.338198736852;PDX1:-0.34793039096;PRRX1,2:-0.370825368386;T:-0.378708516568;POU1F1:-0.380346468979;NFY{A,B,C}:-0.408562961494;EGR1..3:-0.40931594979;FOXD3:-0.411008334552;E2F1..5:-0.411232055887;FOX{F1,F2,J1}:-0.411269341955;DBP:-0.425348226905;GATA6:-0.436206822635;MYOD1:-0.439287527814;NFIL3:-0.439358805349;JUN:-0.440890830993;FOXQ1:-0.442413214741;TBP:-0.442567554945;SOX{8,9,10}:-0.444466123338;SPI1:-0.456216892156;DMAP1_NCOR{1,2}_SMARC:-0.457405486428;FOXM1:-0.465887883887;ETS1,2:-0.477218245866;FOXO1,3,4:-0.486383052615;NKX2-3_NKX2-5:-0.486738953449;SNAI1..3:-0.487449211999;MED-1{core}:-0.498524389459;RUNX1..3:-0.499654405572;ATF2:-0.499941643843;ADNP_IRX_SIX_ZHX:-0.535633647045;IRF7:-0.548635441764;STAT2,4,6:-0.553487766779;SOX5:-0.56842766963;STAT1,3:-0.599592567277;MTF1:-0.609592021092;AR:-0.609618574301;HNF4A_NR2F1,2:-0.612235124849;SPIB:-0.645462374495;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.659809405511;RORA:-0.678615163353;PAX3,7:-0.686712704838;ZEB1:-0.690745276683;BPTF:-0.708161262342;NR1H4:-0.713896381523;ATF5_CREB3:-0.717931862577;RFX2..5_RFXANK_RFXAP:-0.736461403554;NANOG:-0.797849964092;HOXA9_MEIS1:-0.806292883971;FOX{D1,D2}:-0.825844946012;PAX5:-0.830219436729;FOXN1:-0.850713742806;PAX1,9:-0.898969291897;PITX1..3:-0.907694248641;FOXP1:-0.928877076903;CUX2:-0.930821797187;NKX6-1,2:-1.02668617455;BREu{core}:-1.07325871688;POU2F1..3:-1.14049924081;TLX2:-1.14359349875;ALX1:-1.23488842418;PBX1:-1.68975916297;HOX{A6,A7,B6,B7}:-2.0970165174
 +
|xref=
 
}}
 
}}

Latest revision as of 06:52, 17 October 2017

Name:Multipotent Cord Blood Unrestricted Somatic Stem Cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11350
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samplessRNA samples)
Excluding candidate novel miRNAs(CAGE samplessRNA samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissueumbilical cord
dev stagefetus
sexfemale
age?
cell typemesenchymal stem cell
cell lineNA
companyCET
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005087
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11350 CAGE DRX008365 DRR009237
Accession ID Hg19

Library idBAMCTSS
CNhs11350 DRZ000662 DRZ002047
Accession ID Hg38

Library idBAMCTSS
CNhs11350 DRZ012012 DRZ013397
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005087
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10008.ATGTCA sRNA-Seq DRX037120 DRR041486
Accession ID Hg19

Library idBAMCTSS
SRhi10008.ATGTCA DRZ007128


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis--0.0722
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C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11350

Jaspar motif P-value
MA0002.2 0.467
MA0003.1 0.936
MA0004.1 0.788
MA0006.1 0.143
MA0007.1 0.594
MA0009.1 0.0458
MA0014.1 0.507
MA0017.1 0.181
MA0018.2 9.64296e-6
MA0019.1 0.242
MA0024.1 0.00831
MA0025.1 0.0017
MA0027.1 0.509
MA0028.1 0.734
MA0029.1 0.185
MA0030.1 0.167
MA0031.1 0.0263
MA0035.2 0.234
MA0038.1 0.39
MA0039.2 0.517
MA0040.1 0.563
MA0041.1 0.374
MA0042.1 0.628
MA0043.1 0.00309
MA0046.1 0.709
MA0047.2 0.42
MA0048.1 0.14
MA0050.1 3.61559e-5
MA0051.1 0.033
MA0052.1 0.205
MA0055.1 0.174
MA0057.1 0.149
MA0058.1 0.897
MA0059.1 0.621
MA0060.1 2.93026e-4
MA0061.1 0.0943
MA0062.2 0.00603
MA0065.2 0.154
MA0066.1 0.477
MA0067.1 0.0184
MA0068.1 0.0421
MA0069.1 0.238
MA0070.1 0.499
MA0071.1 0.655
MA0072.1 0.811
MA0073.1 0.572
MA0074.1 0.903
MA0076.1 0.287
MA0077.1 0.992
MA0078.1 0.692
MA0079.2 0.914
MA0080.2 7.5718e-9
MA0081.1 0.0192
MA0083.1 0.00197
MA0084.1 0.123
MA0087.1 0.904
MA0088.1 0.392
MA0090.1 2.00869e-5
MA0091.1 0.414
MA0092.1 0.409
MA0093.1 0.967
MA0099.2 0.266
MA0100.1 0.563
MA0101.1 0.00751
MA0102.2 5.62093e-4
MA0103.1 0.0148
MA0104.2 0.0286
MA0105.1 0.678
MA0106.1 0.296
MA0107.1 0.0167
MA0108.2 0.414
MA0111.1 0.0607
MA0112.2 0.0484
MA0113.1 0.602
MA0114.1 0.0408
MA0115.1 0.047
MA0116.1 0.643
MA0117.1 0.358
MA0119.1 0.229
MA0122.1 0.399
MA0124.1 0.995
MA0125.1 0.732
MA0131.1 0.677
MA0135.1 0.435
MA0136.1 6.71596e-9
MA0137.2 0.044
MA0138.2 0.607
MA0139.1 0.541
MA0140.1 0.72
MA0141.1 0.45
MA0142.1 0.14
MA0143.1 0.565
MA0144.1 0.388
MA0145.1 0.707
MA0146.1 0.772
MA0147.1 0.192
MA0148.1 0.624
MA0149.1 0.726
MA0150.1 0.448
MA0152.1 0.0619
MA0153.1 0.563
MA0154.1 0.408
MA0155.1 0.858
MA0156.1 2.58901e-7
MA0157.1 0.124
MA0159.1 0.491
MA0160.1 0.0311
MA0162.1 0.0194
MA0163.1 0.332
MA0164.1 0.837
MA0258.1 0.575
MA0259.1 0.728



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11350

Novel motif P-value
1 0.653
10 0.438
100 0.661
101 0.528
102 0.261
103 0.372
104 0.895
105 0.55
106 0.549
107 0.317
108 0.796
109 0.473
11 0.761
110 0.946
111 0.675
112 0.448
113 8.90759e-4
114 0.343
115 0.397
116 0.412
117 0.787
118 0.719
119 0.865
12 0.133
120 0.204
121 0.317
122 0.333
123 4.06178e-5
124 0.136
125 0.672
126 0.511
127 0.559
128 0.432
129 0.612
13 0.551
130 0.237
131 0.749
132 0.523
133 0.25
134 0.161
135 0.799
136 0.692
137 0.572
138 0.262
139 0.584
14 0.113
140 0.949
141 0.212
142 0.342
143 0.844
144 0.748
145 0.491
146 0.863
147 0.254
148 0.436
149 0.0141
15 0.752
150 0.957
151 0.719
152 0.1
153 0.536
154 0.741
155 0.0188
156 0.667
157 0.0641
158 0.0155
159 0.531
16 0.0212
160 0.863
161 0.434
162 0.892
163 0.766
164 0.411
165 0.629
166 0.0525
167 0.612
168 0.304
169 0.0323
17 0.962
18 0.0576
19 0.0435
2 0.666
20 0.882
21 0.0319
22 0.214
23 0.258
24 0.484
25 0.524
26 0.927
27 0.73
28 0.342
29 0.332
3 0.689
30 0.509
31 0.362
32 3.49966e-15
33 0.339
34 0.615
35 0.0613
36 0.0895
37 0.07
38 0.236
39 0.676
4 0.638
40 0.79
41 0.906
42 0.776
43 0.739
44 0.335
45 0.693
46 0.806
47 0.855
48 0.873
49 0.768
5 0.711
50 0.751
51 0.254
52 0.399
53 0.0295
54 0.932
55 0.277
56 0.821
57 0.614
58 0.191
59 0.0733
6 0.429
60 0.254
61 0.436
62 0.996
63 0.869
64 0.469
65 0.967
66 0.928
67 0.144
68 0.724
69 0.305
7 0.687
70 0.529
71 0.22
72 0.363
73 0.0308
74 0.536
75 0.172
76 0.583
77 0.0727
78 0.889
79 0.0605
8 0.325
80 0.975
81 0.907
82 0.8
83 0.602
84 0.0896
85 0.371
86 0.977
87 0.0722
88 0.514
89 0.0972
9 0.981
90 0.129
91 0.738
92 0.37
93 0.68
94 0.875
95 0.619
96 0.792
97 0.37
98 0.152
99 0.142



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11350


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000081 (blood cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002569 (mesenchymal stem cell of umbilical cord)

UBERON: Anatomy
0002331 (umbilical cord)
0002384 (connective tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0001062 (anatomical entity)
0000478 (extraembryonic structure)
0003104 (mesenchyme)
0010317 (germ layer / neural crest derived structure)
0003422 (mesenchyme of umbilical cord)
0009142 (entire embryonic mesenchyme)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000117 (human mesenchymal stem cell of umbilical cord blood sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)