FF:10025-101D7: Difference between revisions

Latest revision as of 12:15, 3 June 2020

Name:	spleen, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10631
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	spleen
dev stage	39,50,70 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -16
catalog number	Cat:AM6000 Lot:0910061 -16
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005642

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10631		CAGE		DRX008730		DRR009602

Accession ID Hg19

Library id		BAM		CTSS
CNhs10631		DRZ001027		DRZ002412

Accession ID Hg38

Library id		BAM		CTSS
CNhs10631		DRZ012377		DRZ013762

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10022		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.039
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0893
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.039
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0493
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.039
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.039
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.506
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0681
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.193
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.039
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.164
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.237
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0.763
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0748
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.167
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.159
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.382
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.039
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.039
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.326
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.578
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0809
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0748
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.00693
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.593
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.108
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.039
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0.382
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.242
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0363
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.365
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.039
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.234
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0.039
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.244
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0408
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.039
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.571
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.039
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.39
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0748
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.347
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.538
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.0131
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.244
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.0432
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0748
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.139
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10631

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	1.46071e-6
MA0003.1	MA0003.1	0.09
MA0004.1	MA0004.1	0.615
MA0006.1	MA0006.1	0.197
MA0007.1	MA0007.1	0.683
MA0009.1	MA0009.1	0.8
MA0014.1	MA0014.1	0.212
MA0017.1	MA0017.1	0.069
MA0018.2	MA0018.2	0.00277
MA0019.1	MA0019.1	0.1
MA0024.1	MA0024.1	0.283
MA0025.1	MA0025.1	0.719
MA0027.1	MA0027.1	0.664
MA0028.1	MA0028.1	0.237
MA0029.1	MA0029.1	0.258
MA0030.1	MA0030.1	0.124
MA0031.1	MA0031.1	0.195
MA0035.2	MA0035.2	0.57
MA0038.1	MA0038.1	0.944
MA0039.2	MA0039.2	0.189
MA0040.1	MA0040.1	0.442
MA0041.1	MA0041.1	0.871
MA0042.1	MA0042.1	0.181
MA0043.1	MA0043.1	0.0206
MA0046.1	MA0046.1	0.952
MA0047.2	MA0047.2	0.437
MA0048.1	MA0048.1	0.00491
MA0050.1	MA0050.1	4.16268e-16
MA0051.1	MA0051.1	1.70694e-8
MA0052.1	MA0052.1	0.662
MA0055.1	MA0055.1	3.7871e-4
MA0057.1	MA0057.1	0.376
MA0058.1	MA0058.1	0.774
MA0059.1	MA0059.1	0.0645
MA0060.1	MA0060.1	0.0176
MA0061.1	MA0061.1	0.276
MA0062.2	MA0062.2	0.061
MA0065.2	MA0065.2	0.814
MA0066.1	MA0066.1	0.745
MA0067.1	MA0067.1	0.196
MA0068.1	MA0068.1	8.1309e-4
MA0069.1	MA0069.1	0.581
MA0070.1	MA0070.1	0.867
MA0071.1	MA0071.1	0.153
MA0072.1	MA0072.1	0.0397
MA0073.1	MA0073.1	0.348
MA0074.1	MA0074.1	0.849
MA0076.1	MA0076.1	0.561
MA0077.1	MA0077.1	0.939
MA0078.1	MA0078.1	0.573
MA0079.2	MA0079.2	0.0344
MA0080.2	MA0080.2	2.19034e-17
MA0081.1	MA0081.1	3.14293e-4
MA0083.1	MA0083.1	0.952
MA0084.1	MA0084.1	0.674
MA0087.1	MA0087.1	0.0972
MA0088.1	MA0088.1	0.369
MA0090.1	MA0090.1	0.4
MA0091.1	MA0091.1	0.385
MA0092.1	MA0092.1	0.657
MA0093.1	MA0093.1	0.6
MA0099.2	MA0099.2	2.23448e-15
MA0100.1	MA0100.1	0.421
MA0101.1	MA0101.1	0.404
MA0102.2	MA0102.2	0.0732
MA0103.1	MA0103.1	0.707
MA0104.2	MA0104.2	0.00993
MA0105.1	MA0105.1	0.776
MA0106.1	MA0106.1	0.00655
MA0107.1	MA0107.1	0.312
MA0108.2	MA0108.2	0.404
MA0111.1	MA0111.1	0.691
MA0112.2	MA0112.2	0.156
MA0113.1	MA0113.1	0.165
MA0114.1	MA0114.1	0.928
MA0115.1	MA0115.1	0.76
MA0116.1	MA0116.1	0.116
MA0117.1	MA0117.1	0.212
MA0119.1	MA0119.1	0.183
MA0122.1	MA0122.1	0.226
MA0124.1	MA0124.1	0.856
MA0125.1	MA0125.1	0.97
MA0131.1	MA0131.1	0.211
MA0135.1	MA0135.1	0.411
MA0136.1	MA0136.1	1.75377e-18
MA0137.2	MA0137.2	4.61317e-7
MA0138.2	MA0138.2	0.166
MA0139.1	MA0139.1	0.59
MA0140.1	MA0140.1	0.786
MA0141.1	MA0141.1	0.98
MA0142.1	MA0142.1	0.513
MA0143.1	MA0143.1	0.518
MA0144.1	MA0144.1	6.57754e-5
MA0145.1	MA0145.1	0.209
MA0146.1	MA0146.1	0.914
MA0147.1	MA0147.1	0.0172
MA0148.1	MA0148.1	0.84
MA0149.1	MA0149.1	0.743
MA0150.1	MA0150.1	0.00541
MA0152.1	MA0152.1	0.379
MA0153.1	MA0153.1	0.31
MA0154.1	MA0154.1	0.0321
MA0155.1	MA0155.1	0.108
MA0156.1	MA0156.1	3.67267e-21
MA0157.1	MA0157.1	0.252
MA0159.1	MA0159.1	0.967
MA0160.1	MA0160.1	0.93
MA0162.1	MA0162.1	0.868
MA0163.1	MA0163.1	0.419
MA0164.1	MA0164.1	0.445
MA0258.1	MA0258.1	0.762
MA0259.1	MA0259.1	0.009

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10631

Novel motif	Logo	P-value
1	1	0.323
10	10	0.226
100	100	0.0699
101	101	0.974
102	102	0.756
103	103	0.963
104	104	0.634
105	105	0.198
106	106	0.0948
107	107	0.107
108	108	0.644
109	109	0.735
11	11	0.921
110	110	0.63
111	111	0.891
112	112	0.154
113	113	0.0692
114	114	0.426
115	115	0.698
116	116	0.131
117	117	0.164
118	118	0.156
119	119	0.993
12	12	0.925
120	120	0.331
121	121	0.0579
122	122	0.0957
123	123	0.867
124	124	0.108
125	125	0.782
126	126	0.529
127	127	0.491
128	128	0.55
129	129	0.0233
13	13	0.0374
130	130	0.402
131	131	0.884
132	132	0.719
133	133	0.00161
134	134	0.313
135	135	0.00398
136	136	0.73
137	137	0.126
138	138	0.147
139	139	0.636
14	14	0.333
140	140	0.612
141	141	0.828
142	142	0.424
143	143	0.0664
144	144	0.749
145	145	0.297
146	146	0.477
147	147	0.213
148	148	0.361
149	149	0.342
15	15	0.639
150	150	0.916
151	151	0.948
152	152	0.166
153	153	0.532
154	154	0.366
155	155	0.355
156	156	0.779
157	157	0.228
158	158	0.824
159	159	0.358
16	16	0.641
160	160	0.447
161	161	0.82
162	162	0.491
163	163	0.418
164	164	0.0199
165	165	0.852
166	166	0.653
167	167	0.0218
168	168	5.53779e-4
169	169	0.274
17	17	0.957
18	18	0.494
19	19	0.202
2	2	0.0229
20	20	0.0573
21	21	0.569
22	22	0.328
23	23	0.347
24	24	0.373
25	25	0.79
26	26	0.615
27	27	0.0193
28	28	0.855
29	29	0.205
3	3	0.901
30	30	0.14
31	31	0.509
32	32	0.43
33	33	0.807
34	34	0.0366
35	35	0.797
36	36	0.756
37	37	0.58
38	38	0.592
39	39	0.742
4	4	0.146
40	40	0.559
41	41	0.767
42	42	0.748
43	43	0.639
44	44	0.531
45	45	0.0678
46	46	0.788
47	47	0.547
48	48	0.768
49	49	0.933
5	5	0.9
50	50	0.26
51	51	0.536
52	52	0.414
53	53	0.268
54	54	0.524
55	55	0.299
56	56	0.913
57	57	0.0592
58	58	0.23
59	59	0.0655
6	6	0.416
60	60	0.416
61	61	0.525
62	62	0.511
63	63	0.838
64	64	0.515
65	65	0.514
66	66	0.119
67	67	0.75
68	68	0.923
69	69	0.219
7	7	0.936
70	70	0.0531
71	71	0.427
72	72	0.0166
73	73	0.773
74	74	0.602
75	75	0.233
76	76	0.257
77	77	0.253
78	78	0.928
79	79	0.782
8	8	0.971
80	80	9.55431e-6
81	81	0.586
82	82	0.416
83	83	0.117
84	84	0.302
85	85	0.407
86	86	0.263
87	87	0.667
88	88	0.351
89	89	0.864
9	9	0.0495
90	90	0.909
91	91	0.614
92	92	0.409
93	93	0.362
94	94	0.94
95	95	0.517
96	96	0.783
97	97	0.802
98	98	0.305
99	99	0.986

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10631

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010025 human spleen - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002106 (spleen)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0004177 (hemopoietic organ)
0005057 (immune organ)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002390 (hematopoietic system)
0002417 (abdominal segment of trunk)
0002193 (hemolymphoid system)
0000916 (abdomen)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010025 (human spleen - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0004872 (splanchnic layer of lateral plate mesoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008621
+|DRA_sample_Accession=CAGE@SAMD00005642
-|accession_numbers=CAGE;DRX008730;DRR009602;DRZ001027;DRZ002412
+|HumanCAGEScanFiles=NCig10022;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/spleen%252c%2520adult%252c%2520pool1.NCig10022.10025-101D7.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008730;DRR009602;DRZ001027;DRZ002412;DRZ012377;DRZ013762
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002106,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0004177,UBERON:0005057,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002390,UBERON:0002417,UBERON:0002193,UBERON:0000916,UBERON:0002405
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.33!211.84!POU2AF1;;chr6:134210243..134210257,+!p1@TCF21!2.26!181.39!TCF21;;chr11:47400078..47400106,-!p1@SPI1!2.21!161.18!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.18!151.22!IRF8;;chr12:101869096..101869118,+!p1@SPIC!2.10!124.34!SPIC;;chr2:68592406..68592424,+!p1@PLEK!2.04!109.02!PLEK;;chr21:39870339..39870443,-!p1@ERG!1.88!74.62!ERG;;chr6:391743..391759,+!p1@IRF4!1.82!65.32!IRF4;;chr19:50922187..50922204,+!p1@SPIB!1.77!57.80!SPIB;;chr1:214161272..214161322,+!p1@PROX1!1.76!78.85!PROX1;;chr20:39317868..39317884,-!p1@MAFB!1.73!588.90!MAFB;;chr2:100759010..100759035,-!p1@AFF3!1.70!49.06!AFF3;;chr20:62680984..62680999,-!p1@SOX18!1.56!46.62!SOX18;;chr11:47400062..47400077,-!p2@SPI1!1.54!33.65!SPI1;;chr8:55370487..55370503,+!p1@SOX17!1.52!32.24!SOX17;;chr2:231090471..231090504,+!p2@SP140!1.49!30.07!SP140;;chr10:101292684..101292706,+!p1@NKX2-3!1.49!29.89!NKX2-3;;chr7:50344289..50344323,+!p1@IKZF1!1.46!27.73!IKZF1;;chr19:46801639..46801699,+!p1@HIF3A!1.46!27.54!HIF3A;;chr10:102890846..102890877,+!p2@TLX1!1.44!26.50!TLX1;;chr2:231090433..231090469,+!p1@SP140!1.44!26.32!SP140;;chr10:102891048..102891078,+!p1@TLX1!1.43!25.94!TLX1;;chr2:100759037..100759058,-!p2@AFF3!1.41!24.81!AFF3;;chr20:50159198..50159299,-!p1@NFATC2!1.40!35.06!NFATC2;;chr5:172662197..172662216,-!p1@NKX2-5!1.40!24.34!NKX2-5;;chr9:127269661..127269719,-!p1@NR5A1!1.40!24.15!NR5A1;;chr17:37934204..37934241,-!p3@IKZF3!1.40!23.87!IKZF3;;chr11:47279504..47279563,+!p1@NR1H3!1.38!51.32!NR1H3;;chr17:38020392..38020477,-!p1@IKZF3!1.38!22.93!IKZF3;;chr11:128457446..128457461,-!p4@ETS1!1.38!22.74!ETS1;;chr9:117150254..117150271,-!p1@AKNA!1.37!60.24!AKNA;;chr1:25256756..25256774,-!p1@RUNX3!1.34!38.44!RUNX3;;chr5:88178983..88179012,-!p1@MEF2C!1.32!150.19!MEF2C;;chr7:115670804..115670825,-!p1@TFEC!1.32!19.92!TFEC;;chr7:50343634..50343717,+!p2@IKZF1!1.32!19.74!IKZF1;;chrY:21906594..21906622,-!p1@KDM5D!1.31!19.55!KDM5D;;chr9:127269462..127269484,-!p2@NR5A1!1.28!17.86!NR5A1;;chr11:32457075..32457095,-!p1@WT1!1.27!17.57!WT1;;chr5:71803177..71803255,-!p1@ZNF366!1.26!17.29!ZNF366;;chr12:54778471..54778528,-!p1@ZNF385A!1.26!17.01!ZNF385A;;chr15:96873984..96873999,+!p3@NR2F2!1.25!119.92!NR2F2;;chr16:79634624..79634642,-!p1@MAF!1.24!63.44!MAF;;chr3:27763807..27763822,-!p1@EOMES!1.24!16.54!EOMES;;chr13:72441315..72441454,-!p1@DACH1!1.23!31.95!DACH1;;chr18:19749386..19749404,+!p2@GATA6!1.23!22.84!GATA6;;chr14:75988771..75988826,+!p1@BATF!1.22!20.68!BATF;;chr11:47399996..47400014,-!p4@SPI1!1.22!15.41!SPI1;;chr19:45260775..45260838,+!p5@BCL3!1.21!19.74!BCL3;;chr11:47399947..47399961,-!p3@SPI1!1.19!14.66!SPI1;;chr12:54694758..54694805,-!p1@NFE2!1.18!17.29!NFE2;;chr17:37934365..37934387,-!p2@IKZF3!1.18!14.10!IKZF3;;chr5:88120151..88120177,-!p6@MEF2C!1.18!14.00!MEF2C;;chr10:51572408..51572454,+!p3@NCOA4!1.17!79.32!NCOA4;;chr7:50344251..50344288,+!p3@IKZF1!1.17!13.91!IKZF1;;chr7:50348268..50348366,+!p4@IKZF1!1.17!13.63!IKZF1;;chr17:6926362..6926377,+!p1@BCL6B!1.16!13.44!BCL6B;;chr17:38020557..38020572,-!p4@IKZF3!1.15!13.25!IKZF3;;chr18:45935720..45935772,-!p1@ZBTB7C!1.15!12.97!ZBTB7C;;chr1:40105299..40105326,-!p1@HEYL!1.14!12.69!HEYL;;chr18:52989031..52989079,-!p2@TCF4!1.13!29.60!TCF4;;chr2:192015701..192015743,-!p1@STAT4!1.13!17.29!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.13!12.50!SPI1;;chr9:37034186..37034216,-!p2@PAX5!1.13!12.50!PAX5;;chr10:102890767..102890780,+!p4@TLX1!1.12!12.12!TLX1;;chr3:71355163..71355209,-!p5@FOXP1!1.10!15.98!FOXP1;;chr18:53068911..53068935,-!p4@TCF4!1.09!12.78!TCF4;;chr16:79634595..79634620,-!p2@MAF!1.08!20.21!MAF;;chr2:145277640..145277771,-!p1@ZEB2!1.07!146.33!ZEB2;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.07!10.81!SMARCE1;;chr11:113930425..113930471,+!p1@ZBTB16!1.06!15.13!ZBTB16;;chr22:29196433..29196445,-!p4@XBP1!1.06!11.65!XBP1;;chr2:60780607..60780624,-!p2@BCL11A!1.05!31.86!BCL11A;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.04!LYL1;;chr11:128457492..128457506,-!p6@ETS1!1.05!10.24!ETS1;;chr4:185395633..185395651,-!p2@IRF2!1.04!15.98!IRF2;;chr19:42636586..42636607,-!p1@POU2F2!1.03!27.54!POU2F2;;chr2:145277882..145277967,-!p3@ZEB2!1.03!16.82!ZEB2;;chr11:128563948..128564003,+!p1@FLI1!1.01!112.78!FLI1;;chr11:128392273..128392308,-!p2@ETS1!1.01!39.47!ETS1;;chr2:100758991..100759009,-!p3@AFF3!1.01!9.21!AFF3;;chr5:158526756..158526797,-!p3@EBF1!1.01!9.12!EBF1;;chr6:106534192..106534224,+!p1@PRDM1!1.00!25.75!PRDM1;;chr4:185395590..185395627,-!p3@IRF2!0.99!11.09!IRF2;;chr1:25291475..25291511,-!p2@RUNX3!0.99!8.83!RUNX3;;chr1:27240455..27240474,-!p1@NR0B2!0.99!8.83!NR0B2;;chrX:106960285..106960299,-!p1@TSC22D3!0.98!234.49!TSC22D3;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.19!ZBTB16;;chr2:60781201..60781258,-!p3@BCL11A!0.98!8.46!BCL11A;;chr15:96873921..96873946,+!p1@NR2F2!0.97!242.67!NR2F2;;chr19:13213704..13213726,-!p3@LYL1!0.97!11.09!LYL1;;chr6:106546808..106546833,+!p3@PRDM1!0.96!10.24!PRDM1;;chr17:38020516..38020544,-!p5@IKZF3!0.96!8.18!IKZF3;;chr10:102891168..102891197,+!p3@TLX1!0.96!8.18!TLX1;;chr2:68592394..68592405,+!p2@PLEK!0.94!7.71!PLEK;;chr5:133451294..133451310,+!p2@TCF7!0.94!7.61!TCF7;;chr13:41593425..41593480,-!p1@ELF1!0.92!48.03!ELF1;;chr18:19749541..19749557,+!p1@GATA6!0.92!24.06!GATA6;;chr7:97840743..97840786,+!p1@BHLHA15!0.92!7.33!BHLHA15;;chr12:26277956..26277980,-!p1@BHLHE41!0.91!26.69!BHLHE41;;chr3:18486354..18486377,-!p2@SATB1!0.91!9.12!SATB1;;chr19:45251395..45251432,+!p8@BCL3!0.91!7.14!BCL3;;chr2:231090344..231090361,-!p3@SP110!0.91!7.05!SP110;;chrX:131623044..131623089,-!p1@MBNL3!0.90!30.17!MBNL3;;chr12:54694653..54694672,-!p2@NFE2!0.90!6.95!NFE2;;chr17:45810594..45810608,+!p1@TBX21!0.90!6.95!TBX21;;chr3:63953435..63953499,+!p1@ATXN7!0.90!6.95!ATXN7;;chr18:22932080..22932170,-!p1@ZNF521!0.89!29.89!ZNF521;;chr5:88179017..88179046,-!p2@MEF2C!0.89!28.10!MEF2C;;chr11:64764435..64764449,-!p1@BATF2!0.89!9.49!BATF2;;chr7:149470641..149470694,-!p1@ZNF467!0.88!31.01!ZNF467;;chr5:88179195..88179224,-!p3@MEF2C!0.88!10.81!MEF2C;;chr2:70142232..70142251,+!p1@MXD1!0.87!37.78!MXD1;;chr19:45252008..45252024,+!p2@BCL3!0.87!22.37!BCL3;;chr3:169381420..169381535,-!p1@MECOM!0.87!7.61!MECOM;;chr2:27371879..27371907,+!p1@TCF23!0.87!6.39!TCF23;;chr11:47400045..47400060,-!p6@SPI1!0.87!6.39!SPI1;;chr21:40177845..40177863,+!p1@ETS2!0.86!389.19!ETS2;;chr15:96874012..96874042,+!p2@NR2F2!0.86!59.30!NR2F2;;chr2:176994408..176994492,+!p1@HOXD8!0.86!6.20!HOXD8;;chr20:56195474..56195506,-!p1@ZBP1!0.86!6.20!ZBP1;;chr2:61108695..61108753,+!p1@REL!0.85!44.08!REL;;chr16:79633894..79633954,-!p3@MAF!0.85!12.12!MAF;;chrY:2803415..2803468,+!p1@ZFY!0.85!6.11!ZFY;;chr1:167298300..167298319,+!p2@POU2F1!0.85!6.11!POU2F1;;chr2:231084659..231084721,-!p1@SP110!0.84!146.71!SP110;;chr6:157098579..157098634,+!p4@ARID1B!0.84!14.00!ARID1B;;chr10:94449703..94449718,+!p1@HHEX!0.83!23.68!HHEX;;chr19:50432132..50432217,+!p2@ATF5!0.83!6.95!ATF5;;chr17:37934188..37934202,-!p8@IKZF3!0.83!5.83!IKZF3;;chr21:40181520..40181558,+!p11@ETS2!0.83!5.83!ETS2;;chrY:21906761..21906810,-!p2@KDM5D!0.83!5.83!KDM5D;;chr17:37934280..37934299,-!p6@IKZF3!0.83!5.73!IKZF3;;chr6:106534230..106534254,+!p2@PRDM1!0.82!14.94!PRDM1;;chr7:63505799..63505904,+!p1@ZNF727!0.82!5.55!ZNF727;;chr5:133450365..133450444,+!p1@TCF7!0.81!27.07!TCF7;;chr10:35484804..35484902,+!p2@CREM!0.81!22.27!CREM;;chr8:60031619..60031676,-!p1@TOX!0.81!12.31!TOX;;chr17:53342311..53342400,+!p1@HLF!0.81!6.30!HLF;;chr7:50343895..50343936,+!p5@IKZF1!0.81!5.45!IKZF1;;chr6:91006518..91006570,-!p1@BACH2!0.80!12.97!BACH2;;chr10:31288398..31288455,-!p2@ZNF438!0.80!6.30!ZNF438;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.80!5.36!MEF2B;;chr10:114710098..114710130,+!p2@TCF7L2!0.79!42.10!TCF7L2;;chr6:144385698..144385742,-!p2@PLAGL1!0.79!6.48!PLAGL1;;chr13:72441074..72441172,-!p2@DACH1!0.79!5.17!DACH1;;chr1:158979686..158979745,+!p1@IFI16!0.78!181.20!IFI16;;chr15:96876966..96877017,+!p12@NR2F2!0.78!7.52!NR2F2;;chr12:54694807..54694832,-!p3@NFE2!0.78!5.08!NFE2;;chr3:114173720..114173794,-!p6@ZBTB20!0.78!4.98!ZBTB20;;chr20:51588873..51588953,+!p1@TSHZ2!0.77!6.67!TSHZ2;;chr2:60778035..60778060,-!p4@BCL11A!0.77!5.92!BCL11A;;chr3:71179699..71179744,-!p2@FOXP1!0.76!39.29!FOXP1;;chr3:114866084..114866118,-!p2@ZBTB20!0.76!18.61!ZBTB20;;chr10:94449675..94449694,+!p2@HHEX!0.76!13.91!HHEX;;chr10:35484053..35484076,+!p1@CREM!0.76!12.78!CREM;;chr7:128577972..128578047,+!p1@IRF5!0.76!7.89!IRF5;;chr3:107318352..107318392,+!p14@BBX!0.76!4.79!BBX;;chr4:109087445..109087463,-!p1@LEF1!0.76!4.70!LEF1;;chr11:128392085..128392232,-!p1@ETS1!0.75!172.65!ETS1;;chr3:114819124..114819200,-!p3@ZBTB20!0.75!11.56!ZBTB20;;chr9:117138946..117138968,-!p4@AKNA!0.74!4.51!AKNA;;chr19:45261550..45261641,+!p6@BCL3!0.73!7.80!BCL3;;chr10:114889045..114889074,+!p12@TCF7L2!0.73!4.32!TCF7L2;;chr19:16435625..16435682,+!p1@KLF2!0.72!154.60!KLF2;;chr7:44143925..44143970,+!p1@AEBP1!0.72!106.67!AEBP1;;chr9:117160738..117160782,-!p2@AKNA!0.72!19.36!AKNA;;chr10:51572339..51572376,+!p4@NCOA4!0.72!10.34!NCOA4;;chr7:137620650..137620677,-!p3@CREB3L2!0.72!4.23!CREB3L2;;chr3:25470156..25470227,+!p2@RARB!0.72!4.23!RARB;;chr22:29196547..29196563,-!p2@XBP1!0.71!173.59!XBP1;;chr1:158979872..158979898,+!p3@IFI16!0.71!14.10!IFI16;;chr15:96874145..96874166,+!p7@NR2F2!0.71!8.55!NR2F2;;chr3:32023232..32023273,+!p1@ZNF860!0.71!6.20!ZNF860;;chr5:172662303..172662320,-!p2@NKX2-5!0.71!4.14!NKX2-5;;chr21:40177892..40177903,+!p2@ETS2!0.70!18.14!ETS2;;chr17:59477233..59477263,+!p1@TBX2!0.70!13.82!TBX2;;chr14:75988831..75988847,+!p2@BATF!0.70!4.04!BATF;;chr1:25256439..25256476,-!p3@RUNX3!0.70!4.04!RUNX3;;chr6:106546731..106546755,+!p5@PRDM1!0.70!4.04!PRDM1;;chr1:61548225..61548299,+!p1@NFIA!0.69!58.55!NFIA;;chr8:123793860..123793921,+!p2@ZHX2!0.69!11.94!ZHX2;;chr18:77155922..77155939,+!p1@NFATC1!0.69!11.75!NFATC1;;chr8:106330656..106330684,+!p1@ZFPM2!0.69!11.18!ZFPM2;;chr5:88179518..88179569,-!p5@MEF2C!0.69!5.36!MEF2C;;chr7:28725715..28725727,+!p3@CREB5!0.69!4.79!CREB5;;chr14:75904485..75904519,+!p12@JDP2!0.69!3.95!JDP2;;chr18:19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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002075;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002106;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002323;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004177
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0006603,UBERON:0004872,UBERON:0010316
 |fonse_cell_line=
@@ Line 40: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spleen%252c%2520adult%252c%2520pool1.CNhs10631.10025-101D7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10025-101D7
 |is_a=EFO:0002091;;FF:0010025
 |is_obsolete=
 |library_id=CNhs10631
-|library_ids=CNhs10631
+|library_id_phase_based=2:CNhs10631
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10025
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10025
 |name=spleen, adult, pool1
 |namespace=FANTOM5
@@ Line 50: / Line 62: @@
 |profile_cagescan=NCig10022,,,
 |profile_hcage=CNhs10631,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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@@ Line 88: / Line 101: @@
 |sample_tissue=spleen
 |top_motifs=POU5F1:2.23351717773;TFAP4:2.05081609735;POU2F1..3:1.85476386081;SPIB:1.8449402307;RBPJ:1.83823476104;ETS1,2:1.83270814229;TLX2:1.81346639899;IRF1,2:1.71073098803;NFATC1..3:1.66382115777;ELF1,2,4:1.6602809751;SPI1:1.41528287697;IRF7:1.4056091439;TFCP2:1.38299799762;T:1.35077963279;STAT1,3:1.34612139379;PRDM1:1.26992258685;DMAP1_NCOR{1,2}_SMARC:1.15321593166;IKZF2:1.15200609435;PATZ1:1.13616435803;RUNX1..3:1.08485540856;SPZ1:1.00293827914;FOXO1,3,4:1.00156962571;AR:0.98731747087;FOX{D1,D2}:0.958044134552;STAT2,4,6:0.93258712567;XCPE1{core}:0.917614163877;SREBF1,2:0.916629986346;FOXA2:0.878253642554;SOX5:0.85121539507;MYFfamily:0.835997422572;RXRA_VDR{dimer}:0.786171942469;NANOG{mouse}:0.779672971973;NR5A1,2:0.764326989721;MTF1:0.714665664457;MAZ:0.700682726989;FOXD3:0.692220342887;MAFB:0.688867279625;MTE{core}:0.686921474919;GATA6:0.681990923649;SMAD1..7,9:0.664238782256;GCM1,2:0.659385339749;MZF1:0.657937098589;TGIF1:0.649209216649;FOXP3:0.645565949322;GATA4:0.644054307402;HMX1:0.633487741193;SP1:0.588815891117;SRF:0.586794722228;HAND1,2:0.557122621579;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.554021343842;HBP1_HMGB_SSRP1_UBTF:0.540831563063;PAX6:0.531199631054;MYOD1:0.518207347305;ZNF148:0.504547453325;FOX{I1,J2}:0.494933181777;RREB1:0.415108820084;BREu{core}:0.39190814216;NR1H4:0.381487940804;HNF4A_NR2F1,2:0.35707763675;EP300:0.296443233127;GTF2I:0.281859843647;ALX1:0.276322530884;EBF1:0.262067390416;ZFP161:0.26151257415;FOX{F1,F2,J1}:0.2594401874;ESR1:0.254387631555;MED-1{core}:0.249214375979;EGR1..3:0.23738115451;ATF2:0.227611237088;RXR{A,B,G}:0.198056043895;GTF2A1,2:0.190290217308;ZEB1:0.185955043022;TBP:0.168242359533;TFAP2{A,C}:0.164874672014;LMO2:0.156962621672;HIC1:0.146411417954;HMGA1,2:0.139920992801;NR3C1:0.13960683177;SOX{8,9,10}:0.139585208243;IKZF1:0.118493272116;NFKB1_REL_RELA:0.111712716678;ZNF238:0.0690422176082;GZF1:0.0671320603491;HES1:0.0649379191544;ZNF423:0.0225416439166;NKX6-1,2:0.0078930731922;TFAP2B:-0.000487913669464;PBX1:-0.0181435549882;CEBPA,B_DDIT3:-0.0233954524027;TLX1..3_NFIC{dimer}:-0.0299634043902;NKX3-2:-0.0321675095888;AIRE:-0.0420187679692;ADNP_IRX_SIX_ZHX:-0.0611050185469;PAX5:-0.0638494508638;CUX2:-0.0723460618742;REST:-0.0880578082542;PAX3,7:-0.0978394486975;SNAI1..3:-0.119625896452;NR6A1:-0.131068522303;FOXP1:-0.132636901937;NFIL3:-0.134849060436;FOXN1:-0.159559398106;NKX3-1:-0.163572714325;FOXQ1:-0.16891121889;HIF1A:-0.179669251715;GFI1B:-0.186962512398;HNF1A:-0.199295294742;CRX:-0.209180695698;EN1,2:-0.25824382727;POU1F1:-0.258494943989;OCT4_SOX2{dimer}:-0.270764398767;PAX2:-0.277649012238;ZNF143:-0.292230755705;bHLH_family:-0.299038307563;NFY{A,B,C}:-0.304296476492;SOX2:-0.309669148402;MEF2{A,B,C,D}:-0.311130738812;KLF4:-0.316377837977;E2F1..5:-0.320504401101;CDX1,2,4:-0.322050012681;MYBL2:-0.324018976863;LEF1_TCF7_TCF7L1,2:-0.342994359725;TOPORS:-0.347968231775;NANOG:-0.351965324415;TEF:-0.363749039613;PAX1,9:-0.397661128606;TEAD1:-0.405932763451;NKX2-1,4:-0.410787768615;NHLH1,2:-0.418410120916;HSF1,2:-0.421972007351;TAL1_TCF{3,4,12}:-0.430119474735;ALX4:-0.435375461229;RORA:-0.468134672134;HLF:-0.468526045346;CREB1:-0.478795259028;VSX1,2:-0.481931219609;ATF6:-0.48543947905;NRF1:-0.505215013987;NKX2-2,8:-0.508584536265;ATF4:-0.516784886091;POU3F1..4:-0.531287707609;BPTF:-0.54068175365;EVI1:-0.54578305674;MYB:-0.560639708498;JUN:-0.569269895765;NFE2L2:-0.570515832423;DBP:-0.583821461127;GLI1..3:-0.594274411266;GFI1:-0.599049738314;PPARG:-0.60510710547;RFX2..5_RFXANK_RFXAP:-0.60804779634;HOX{A6,A7,B6,B7}:-0.608502513941;XBP1:-0.620903219913;PRRX1,2:-0.633619114286;ZNF384:-0.636743449643;SOX17:-0.641622965056;AHR_ARNT_ARNT2:-0.645495338333;ATF5_CREB3:-0.6472595173;PDX1:-0.664260935361;POU6F1:-0.68246913778;LHX3,4:-0.690744635561;NFE2:-0.705779943346;TFDP1:-0.714267270286;ELK1,4_GABP{A,B1}:-0.720395149159;TBX4,5:-0.747112443419;FOSL2:-0.757791205039;YY1:-0.777004190932;FOS_FOS{B,L1}_JUN{B,D}:-0.78668462861;ZIC1..3:-0.803018945289;CDC5L:-0.852766154663;FOXM1:-0.857770962712;NKX2-3_NKX2-5:-0.872864951485;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.91919282423;UFEwm:-0.924980358134;BACH2:-0.941392410187;STAT5{A,B}:-0.970100844968;FOXL1:-1.03366097725;PAX8:-1.0574160465;HOXA9_MEIS1:-1.08572242833;PITX1..3:-1.09162706439;HOX{A4,D4}:-1.20576047686;ZBTB6:-1.25698796987;ZBTB16:-1.26765672701;NFE2L1:-1.26911084491;TP53:-1.280275462;RFX1:-1.31179874407;ESRRA:-1.36906286554;HOX{A5,B5}:-1.3723917292;NFIX:-1.39336348888;PAX4:-1.51379388328;ARID5B:-1.70670247799;ONECUT1,2:-2.24148722139
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10025-101D7;search_select_hide=table117:FF:10025-101D7
 }}

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FF:10025-101D7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:15, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0