FF:11345-117G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet= | |DRA_sample_Accession=CAGE@SAMD00005873 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005873 | ||
|accession_numbers=CAGE;DRX008244;DRR009116;DRZ000541;DRZ001926;DRZ011891;DRZ013276 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037192;DRR041558;DRZ007200 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007100,UBERON:0000948,UBERON:0002384,UBERON:0000479,UBERON:0010314,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0010317,UBERON:0004535,UBERON:0001009 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0002494,CL:0000057,CL:0002548 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000057,FF:0000001,FF:0000059 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Fibroblast%2520-%2520Cardiac%252c%2520donor2.CNhs11378.11345-117G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11345-117G4 | |id=FF:11345-117G4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000059 | ||
|is_obsolete= | |||
|library_id=CNhs11378 | |||
|library_id_phase_based=2:CNhs11378 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11345 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10012.AGTCAA.11345 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11345 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10012.AGTCAA.11345 | |||
|name=Fibroblast - Cardiac, donor2 | |name=Fibroblast - Cardiac, donor2 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 65: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11378,LSID771,release012,COMPLETED | |profile_hcage=CNhs11378,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10012,,, | |profile_srnaseq=SRhi10012,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.157721704335734,0,0,0,0,-0.160318030086386,0,0.218872630514244,-0.124681856241208,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162120398323041,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.375572092832175,0,0,0,0.315443408671468,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156168199482549,0,0,0,0.0420598885216472,-0.211197402695869,0,0.315443408671468,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.433522889053434,0.898704493612954,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,-0.0980353512377064,0,0,0,0,0,0,0,0,0.315443408671468,0,0,0.0682645333859037,0,-0.15864281008054,0.171928266147996,0,0,-0.269557382573836,0,0,0,0,0,0,0,0,0,0.187323541718904,0,-0.0504125515893149,0,0,0,0,0,-0.305472230898407,0,-0.17425806114951,-0.0683442610773682,0,0,0,0,0.0452027393371438,0,-0.120879483793741,-0.0827201683234173,-0.221611588102807,0.0284455392504894,-0.055712496781182,0,0,0,0.132173401756523,-0.394874304789607,0,0,0.0359418525838602,-0.181349618560659,0,0,0.105190181156124,0,-0.0994575523080924,0.315000119582319,0,-0.286331650915042,0,0,0,0,0,0,0,0,0,0,0,-0.0574934668214365,-0.326988596678969,-0.0304099808375785,0,0,0,0.266934694849549,0,0,0.122948606751192,0.0252153913428368,0.0245148167016065,0.565618774197573,0,-0.302389727009913,-0.152527989316079,-0.075200562497641,0.1475360311522,-0.147401849371139,0.306253043157911,0,0.156168199482549,0.0156419021956227,0,0.101073578732764,-0.00153207528247834,0.409068936454007,-0.183652170075264,0,0,0,0.162864186783054,0,0,0.00612004823098478,0.0750590614111005,0.192404716776021,0.194534448681673,0.143219877441191,0.119193851489286,-0.0395325284566706,-0.141993044225127,0,0.448751438881053,0,0,-0.0699450546788141,-0.0420118584407915,-0.289677344399564,0.186088358130955,0,-0.168534053139512,0.2470991475941,0.108993133190486,0.197347383131289,0.0462309916311014,0,0,0.143030073899315,0,0,0.150462375102319,0,0,-0.131435388965503,-0.224048734358698,-0.232855561555545,0,0.080515085485329,-0.0316613381450905,0.014466223949054,0,0.0255768554889029,-0.13039100021619,0,-0.292633804596236,0,0.201069996489817,-0.200427106240355,-0.164990696339003,-0.422394805391737,-0.0584468268118252,-0.10696732517245,-0.212145889042567,0.0420598885216472,0.0805816640968023,0,0.535377776127993,0,0.14206458937052,0.0423091731492025,0,0.178331013810609,0,0.126720926259647,0,-0.509394001784414,0,-0.0780515993572362,-0.224990342801772,-0.439289374580686,-0.67734094129265,0,0.260661199083094,1.6826134937029,0,0,-0.0164716176863073,0,-0.150367083334639,-0.697695966512583,-0.211650427864589,0.0187322476565394,0,-0.293845395681898,0,0,-0.0434137815207321,-0.235476037764389,0,0.21521783006865,0.318805059807087,0.19769849011434,0.507533535168347,0,0,-0.645700337992725,0,0,-0.60592806381803,0.0639634196546602,0.249738204928395,0.370178267116525,0.00916597902704495,0.297216276235358,0,0,-0.177527765965176,0,0.121844995299067,0,0,0.308797673391727,0.506876495613148,0,0,0,-0.00684541011610425,0,-0.026275491295489,0,0,0.0434591754728897,0,0,-0.206522061952173,-0.0393899215449798,0,0.118868655014961,0,0,0,0,0,0,0,0.496234762707758,0.435758298157223,0,-0.12301741567642,0,0,0,0,-0.215723402553475,-0.203236562094724,0,-0.131862706497632,0,0,0,0,0.229302418882257,0,0,0,0,-0.057730457053664,0.390678143142317,0,0,0,-0.27695440160179,0,0,0,0,-0.204484085784407,0,0,0,0,0.172308660834568,-0.0815818795468414,0,-0.238097190445998,0.722606449372338,0.626889363394549,0,0,-0.261347131789888,0,0,-0.234029790323613,0,0,0,0,0,0,0,0,0,0.101128896271713,0,0,0,0,0,0,0,0,0,0,0,-0.496027704831435,-0.0922240566585104,0,0,0,0,0,0,0,-0.0241060230789031,-0.56927204551032,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,-0.0969923612426051,0,0,0,0.315443408671468,-0.249363712482416,0,0,0.218872630514244,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372915676672311,0.724304002425368,0,0,0,0,0,0,0,0.0406101104653777,0,0,0,0,-0.113884373708977,0,0,0,-0.104796384789156,0,-0.160318030086386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.358309136798032,0.132946125555512,0.147678207111298,-0.0568589461625992,0,0,0.079123951668599,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0962259712900034,0,0,0,0,0,0,0,-0.0979578962680575,0.315443408671468,0,-0.0920328098005262,0,0,0,0,0,0,-0.287976840656709,0.332161746500864,0.0371443709049321,0,0,0,0.103336131853279,0,0,0,0,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162120398323041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.315443408671468,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.508721075113683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464092661936634,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,0.411858130477731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.235060633844244,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.068523459304664,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0618328003829631,0,0,0.200596877998143,0,0,0,0,0,0,0,0,0,0,0,0,0.434914583557632,0,0,0,0,0,0,0,0,0,0.315443408671468,-0.0484300422256687,0,0,0,0,0,0,0,0,1.4745400985331,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.468194737205887,0.898704493612954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.197002371771664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0296969223726757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.248117381353879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA306-R10f | |rna_catalog_number=CA306-R10f | ||
| Line 56: | Line 82: | ||
|rna_tube_id=117G4 | |rna_tube_id=117G4 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10012.AGTCAA | |||
|sample_age=emrbyo 21week | |sample_age=emrbyo 21week | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 97: | ||
|sample_ethnicity=U | |sample_ethnicity=U | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.013858424696e-206!GO:0005737;cytoplasm;7.5103225547949e-189!GO:0043226;organelle;8.20783041563034e-158!GO:0043229;intracellular organelle;1.18875807377572e-157!GO:0043231;intracellular membrane-bound organelle;4.04371342025956e-153!GO:0043227;membrane-bound organelle;1.06343873620481e-152!GO:0044444;cytoplasmic part;4.8505246433055e-131!GO:0044422;organelle part;8.46912883936524e-126!GO:0044446;intracellular organelle part;1.57134421335957e-124!GO:0032991;macromolecular complex;1.86225881381861e-86!GO:0005515;protein binding;2.77174251524433e-86!GO:0044238;primary metabolic process;1.95284331785834e-73!GO:0030529;ribonucleoprotein complex;1.08452454569904e-72!GO:0044237;cellular metabolic process;4.83327589446117e-72!GO:0043170;macromolecule metabolic process;2.8961030578707e-64!GO:0043233;organelle lumen;3.94628313662948e-62!GO:0031974;membrane-enclosed lumen;3.94628313662948e-62!GO:0005739;mitochondrion;1.80182767654127e-61!GO:0003723;RNA binding;1.18502617288671e-54!GO:0044428;nuclear part;7.77009126628256e-54!GO:0031090;organelle membrane;1.8393595801821e-50!GO:0019538;protein metabolic process;1.74424817940657e-49!GO:0016043;cellular component organization and biogenesis;3.91031501155243e-49!GO:0005634;nucleus;4.7281731434134e-49!GO:0006412;translation;1.09623411783116e-47!GO:0005840;ribosome;2.1617198875795e-45!GO:0009058;biosynthetic process;7.28660671322548e-45!GO:0043234;protein complex;1.88533895190487e-44!GO:0044260;cellular macromolecule metabolic process;7.63584482428154e-44!GO:0044267;cellular protein metabolic process;3.38487633350295e-43!GO:0044429;mitochondrial part;2.31940775765604e-42!GO:0044249;cellular biosynthetic process;4.2084919061353e-42!GO:0003735;structural constituent of ribosome;4.82578407895702e-41!GO:0015031;protein transport;1.38287368733149e-39!GO:0006396;RNA processing;3.19505183239434e-39!GO:0009059;macromolecule biosynthetic process;3.37217006538578e-39!GO:0033036;macromolecule localization;6.69910149056667e-39!GO:0005829;cytosol;7.11753305844613e-38!GO:0031967;organelle envelope;6.50456429112386e-37!GO:0031975;envelope;1.4246093851299e-36!GO:0008104;protein localization;1.68589767006253e-36!GO:0045184;establishment of protein localization;3.25967032017191e-36!GO:0033279;ribosomal subunit;1.32287537847464e-35!GO:0031981;nuclear lumen;8.07902520179049e-35!GO:0046907;intracellular transport;7.39948640875817e-33!GO:0006996;organelle organization and biogenesis;8.59872634423549e-32!GO:0043283;biopolymer metabolic process;8.77997479670128e-31!GO:0043228;non-membrane-bound organelle;1.45131851079671e-29!GO:0043232;intracellular non-membrane-bound organelle;1.45131851079671e-29!GO:0065003;macromolecular complex assembly;2.35716868809617e-29!GO:0016071;mRNA metabolic process;3.51796635847347e-29!GO:0005740;mitochondrial envelope;1.18673978277e-28!GO:0006886;intracellular protein transport;1.7385539375794e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.44798830047987e-27!GO:0031966;mitochondrial membrane;6.21345109054635e-27!GO:0010467;gene expression;1.18825664604009e-26!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.18825664604009e-26!GO:0008380;RNA splicing;5.32809134201664e-26!GO:0022607;cellular component assembly;1.2118213211978e-25!GO:0019866;organelle inner membrane;2.1321529246712e-25!GO:0006397;mRNA processing;2.23740059247326e-25!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.08301184755682e-24!GO:0005743;mitochondrial inner membrane;4.62741573511913e-24!GO:0000166;nucleotide binding;4.4939438113937e-22!GO:0044445;cytosolic part;9.36769501766158e-22!GO:0005783;endoplasmic reticulum;3.90049100440031e-21!GO:0012505;endomembrane system;5.91615394132964e-21!GO:0017111;nucleoside-triphosphatase activity;2.61500552318887e-20!GO:0006119;oxidative phosphorylation;3.03717853460805e-20!GO:0005654;nucleoplasm;3.04286117663643e-20!GO:0044455;mitochondrial membrane part;3.31303441617983e-20!GO:0016462;pyrophosphatase activity;3.39857423115403e-20!GO:0006259;DNA metabolic process;3.39936635691998e-20!GO:0051641;cellular localization;3.53090443106563e-20!GO:0051649;establishment of cellular localization;3.56807820690038e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.94286853000858e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;8.10044056421738e-20!GO:0005681;spliceosome;4.30894069991814e-19!GO:0015934;large ribosomal subunit;5.06466499793251e-19!GO:0044432;endoplasmic reticulum part;3.72867305996866e-18!GO:0006457;protein folding;7.81567996362805e-18!GO:0015935;small ribosomal subunit;1.46477364837311e-17!GO:0032553;ribonucleotide binding;2.50251362332769e-17!GO:0032555;purine ribonucleotide binding;2.50251362332769e-17!GO:0031980;mitochondrial lumen;3.20371804054376e-17!GO:0005759;mitochondrial matrix;3.20371804054376e-17!GO:0017076;purine nucleotide binding;4.91865392626428e-17!GO:0044451;nucleoplasm part;6.40920792919958e-17!GO:0008134;transcription factor binding;1.90360505719933e-16!GO:0007049;cell cycle;2.3921814395686e-16!GO:0048770;pigment granule;2.6990999733834e-16!GO:0042470;melanosome;2.6990999733834e-16!GO:0005794;Golgi apparatus;5.98960835729984e-16!GO:0016874;ligase activity;7.30595480221864e-16!GO:0005730;nucleolus;1.20296291113611e-15!GO:0005746;mitochondrial respiratory chain;2.04299479991484e-15!GO:0006605;protein targeting;3.16632458098961e-15!GO:0022618;protein-RNA complex assembly;4.95244350483971e-15!GO:0051186;cofactor metabolic process;7.38580139621183e-15!GO:0000502;proteasome complex (sensu Eukaryota);1.26553442307051e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.3665632353697e-14!GO:0005524;ATP binding;5.3665632353697e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.48621377452581e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);9.49904485510168e-14!GO:0032559;adenyl ribonucleotide binding;9.80761927290157e-14!GO:0044265;cellular macromolecule catabolic process;1.27496924333396e-13!GO:0008135;translation factor activity, nucleic acid binding;1.28244268211332e-13!GO:0051082;unfolded protein binding;1.55196806549323e-13!GO:0016192;vesicle-mediated transport;2.09553630770377e-13!GO:0050136;NADH dehydrogenase (quinone) activity;2.23035273188215e-13!GO:0003954;NADH dehydrogenase activity;2.23035273188215e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.23035273188215e-13!GO:0030554;adenyl nucleotide binding;2.54617568918494e-13!GO:0009057;macromolecule catabolic process;3.57645718297772e-13!GO:0022402;cell cycle process;3.73854491733044e-13!GO:0043285;biopolymer catabolic process;4.86897686869958e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.2445837116724e-13!GO:0043412;biopolymer modification;5.77921782906718e-13!GO:0006512;ubiquitin cycle;6.72131840503795e-13!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.15264126821759e-12!GO:0048193;Golgi vesicle transport;1.25360381704005e-12!GO:0005789;endoplasmic reticulum membrane;2.18210926171605e-12!GO:0044248;cellular catabolic process;4.49137356361644e-12!GO:0042254;ribosome biogenesis and assembly;5.36114135407259e-12!GO:0006464;protein modification process;6.85709207938597e-12!GO:0012501;programmed cell death;9.28410270334849e-12!GO:0000278;mitotic cell cycle;1.0307541419012e-11!GO:0005761;mitochondrial ribosome;1.04057184066187e-11!GO:0000313;organellar ribosome;1.04057184066187e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.13405906104201e-11!GO:0045271;respiratory chain complex I;1.13405906104201e-11!GO:0005747;mitochondrial respiratory chain complex I;1.13405906104201e-11!GO:0042775;organelle ATP synthesis coupled electron transport;1.22509970159356e-11!GO:0042773;ATP synthesis coupled electron transport;1.22509970159356e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;1.33728191417605e-11!GO:0006915;apoptosis;1.44539973494413e-11!GO:0006732;coenzyme metabolic process;1.59573241119719e-11!GO:0019941;modification-dependent protein catabolic process;1.71346287590589e-11!GO:0043632;modification-dependent macromolecule catabolic process;1.71346287590589e-11!GO:0044257;cellular protein catabolic process;2.31413414979423e-11!GO:0048523;negative regulation of cellular process;2.80276553999786e-11!GO:0006511;ubiquitin-dependent protein catabolic process;3.00533741161219e-11!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.65091774637514e-11!GO:0003712;transcription cofactor activity;4.05820170933847e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;4.91938037502426e-11!GO:0000375;RNA splicing, via transesterification reactions;4.91938037502426e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.91938037502426e-11!GO:0003743;translation initiation factor activity;7.03107238699945e-11!GO:0030163;protein catabolic process;8.08775410493142e-11!GO:0006913;nucleocytoplasmic transport;8.74561615115834e-11!GO:0016887;ATPase activity;8.7671386324456e-11!GO:0009055;electron carrier activity;9.12366056907685e-11!GO:0009259;ribonucleotide metabolic process;1.41966378716614e-10!GO:0042623;ATPase activity, coupled;1.77646448914952e-10!GO:0006325;establishment and/or maintenance of chromatin architecture;2.10677644091186e-10!GO:0051169;nuclear transport;2.21944007681177e-10!GO:0005793;ER-Golgi intermediate compartment;2.49665297366195e-10!GO:0008219;cell death;2.56359561354374e-10!GO:0016265;death;2.56359561354374e-10!GO:0003676;nucleic acid binding;4.5472647779503e-10!GO:0008565;protein transporter activity;4.81597244444967e-10!GO:0043687;post-translational protein modification;6.63954450989886e-10!GO:0006163;purine nucleotide metabolic process;6.64716743751155e-10!GO:0006323;DNA packaging;7.72910100991517e-10!GO:0009150;purine ribonucleotide metabolic process;8.94940319821681e-10!GO:0051276;chromosome organization and biogenesis;1.18500478214092e-09!GO:0006399;tRNA metabolic process;1.60025340957935e-09!GO:0048519;negative regulation of biological process;1.86889649677492e-09!GO:0005635;nuclear envelope;2.21874906544393e-09!GO:0006413;translational initiation;2.29322466661707e-09!GO:0009260;ribonucleotide biosynthetic process;3.05620639937635e-09!GO:0017038;protein import;3.34924524661729e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.67847547640722e-09!GO:0006366;transcription from RNA polymerase II promoter;4.02904439201345e-09!GO:0044453;nuclear membrane part;4.31778044132955e-09!GO:0006446;regulation of translational initiation;4.42043765680203e-09!GO:0006164;purine nucleotide biosynthetic process;4.51402904587191e-09!GO:0009152;purine ribonucleotide biosynthetic process;5.92487668553032e-09!GO:0031965;nuclear membrane;6.13515573780433e-09!GO:0065004;protein-DNA complex assembly;6.15117468355165e-09!GO:0051726;regulation of cell cycle;7.14129632574982e-09!GO:0006333;chromatin assembly or disassembly;1.02539030492691e-08!GO:0051246;regulation of protein metabolic process;1.05545047784721e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.19495714509466e-08!GO:0000074;regulation of progression through cell cycle;1.3204337777987e-08!GO:0009199;ribonucleoside triphosphate metabolic process;1.3204337777987e-08!GO:0065002;intracellular protein transport across a membrane;1.39377128731312e-08!GO:0009141;nucleoside triphosphate metabolic process;2.11066413975127e-08!GO:0005788;endoplasmic reticulum lumen;2.34435479751129e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.85242040499201e-08!GO:0006461;protein complex assembly;2.91127760108444e-08!GO:0016070;RNA metabolic process;2.91838254914302e-08!GO:0003924;GTPase activity;3.00722603051044e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.09705183359101e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.09705183359101e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.09705183359101e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.14347272791881e-08!GO:0009144;purine nucleoside triphosphate metabolic process;3.14347272791881e-08!GO:0006974;response to DNA damage stimulus;3.20587943670098e-08!GO:0008639;small protein conjugating enzyme activity;3.21627215029967e-08!GO:0019787;small conjugating protein ligase activity;3.30278601676423e-08!GO:0006334;nucleosome assembly;3.35339994574034e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.63586238265462e-08!GO:0006364;rRNA processing;3.91123675213753e-08!GO:0009142;nucleoside triphosphate biosynthetic process;4.86899943555982e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;4.86899943555982e-08!GO:0004842;ubiquitin-protein ligase activity;5.20763364198584e-08!GO:0006888;ER to Golgi vesicle-mediated transport;5.51240401857016e-08!GO:0030120;vesicle coat;5.70774902914111e-08!GO:0030662;coated vesicle membrane;5.70774902914111e-08!GO:0015986;ATP synthesis coupled proton transport;5.83134163336601e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;5.83134163336601e-08!GO:0016604;nuclear body;5.9342281733403e-08!GO:0005694;chromosome;6.0495687245594e-08!GO:0016072;rRNA metabolic process;6.47357148240847e-08!GO:0000785;chromatin;6.82789363277103e-08!GO:0043038;amino acid activation;6.82789363277103e-08!GO:0006418;tRNA aminoacylation for protein translation;6.82789363277103e-08!GO:0043039;tRNA aminoacylation;6.82789363277103e-08!GO:0005643;nuclear pore;7.98291950898923e-08!GO:0044427;chromosomal part;8.65821627130121e-08!GO:0051188;cofactor biosynthetic process;8.98639384913321e-08!GO:0043067;regulation of programmed cell death;9.11211665890661e-08!GO:0016491;oxidoreductase activity;9.38108097232272e-08!GO:0016740;transferase activity;1.07760587541148e-07!GO:0042981;regulation of apoptosis;1.11730087147544e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.15643756592973e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.15643756592973e-07!GO:0008026;ATP-dependent helicase activity;1.16569150899636e-07!GO:0031497;chromatin assembly;1.21695432541791e-07!GO:0019829;cation-transporting ATPase activity;1.29767832486286e-07!GO:0022403;cell cycle phase;1.42038839770608e-07!GO:0031252;leading edge;1.91442750199799e-07!GO:0046034;ATP metabolic process;1.99569676505783e-07!GO:0016881;acid-amino acid ligase activity;2.05425453510252e-07!GO:0009060;aerobic respiration;2.25873539482848e-07!GO:0009056;catabolic process;2.50831909865857e-07!GO:0048475;coated membrane;2.51424741870537e-07!GO:0030117;membrane coat;2.51424741870537e-07!GO:0004386;helicase activity;2.5326945591788e-07!GO:0044431;Golgi apparatus part;2.90983559504155e-07!GO:0006260;DNA replication;3.14130647295663e-07!GO:0007005;mitochondrion organization and biogenesis;3.23781224315832e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.34257194070463e-07!GO:0000087;M phase of mitotic cell cycle;3.52383592232427e-07!GO:0007067;mitosis;3.58963976290605e-07!GO:0046930;pore complex;4.12435597168582e-07!GO:0003714;transcription corepressor activity;4.98561475989824e-07!GO:0043069;negative regulation of programmed cell death;5.02787628777123e-07!GO:0015078;hydrogen ion transmembrane transporter activity;5.17637333854281e-07!GO:0045333;cellular respiration;5.4010939302159e-07!GO:0009117;nucleotide metabolic process;5.46349277449692e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.19055638386032e-07!GO:0006754;ATP biosynthetic process;6.50356326475062e-07!GO:0006753;nucleoside phosphate metabolic process;6.50356326475062e-07!GO:0005768;endosome;8.22290285886463e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.19435117944958e-06!GO:0048522;positive regulation of cellular process;1.2229207895394e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.25118626788353e-06!GO:0009719;response to endogenous stimulus;1.31353000091276e-06!GO:0043066;negative regulation of apoptosis;1.32063234059735e-06!GO:0006281;DNA repair;1.41994229628765e-06!GO:0006793;phosphorus metabolic process;1.57119028939272e-06!GO:0006796;phosphate metabolic process;1.57119028939272e-06!GO:0016564;transcription repressor activity;1.80578481091282e-06!GO:0051170;nuclear import;1.88859573765069e-06!GO:0016023;cytoplasmic membrane-bound vesicle;1.98870860684377e-06!GO:0016310;phosphorylation;2.1233775625921e-06!GO:0006606;protein import into nucleus;2.22318563410834e-06!GO:0045786;negative regulation of progression through cell cycle;2.55961597138828e-06!GO:0016607;nuclear speck;2.91318525895371e-06!GO:0031988;membrane-bound vesicle;3.23100213275364e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.43142647351496e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.5606231942064e-06!GO:0051301;cell division;3.7339231092914e-06!GO:0005525;GTP binding;3.9835533363922e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;4.86781502842282e-06!GO:0045259;proton-transporting ATP synthase complex;5.23465572386839e-06!GO:0006403;RNA localization;5.24298275244161e-06!GO:0051187;cofactor catabolic process;5.57827601737537e-06!GO:0006916;anti-apoptosis;5.66086057730929e-06!GO:0050657;nucleic acid transport;5.80445908049214e-06!GO:0051236;establishment of RNA localization;5.80445908049214e-06!GO:0050658;RNA transport;5.80445908049214e-06!GO:0016563;transcription activator activity;5.93369077005189e-06!GO:0016853;isomerase activity;6.24668388843782e-06!GO:0006752;group transfer coenzyme metabolic process;7.19568184986854e-06!GO:0005667;transcription factor complex;7.19568184986854e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;8.42780104448648e-06!GO:0009108;coenzyme biosynthetic process;8.42801332073124e-06!GO:0006099;tricarboxylic acid cycle;9.04644870118444e-06!GO:0046356;acetyl-CoA catabolic process;9.04644870118444e-06!GO:0030029;actin filament-based process;9.60255429123162e-06!GO:0031324;negative regulation of cellular metabolic process;1.06169052114465e-05!GO:0045454;cell redox homeostasis;1.19122805996774e-05!GO:0006091;generation of precursor metabolites and energy;1.39665936471433e-05!GO:0016567;protein ubiquitination;1.47043252070334e-05!GO:0006084;acetyl-CoA metabolic process;1.51073901358324e-05!GO:0016568;chromatin modification;1.64384739701479e-05!GO:0009109;coenzyme catabolic process;1.67420941532016e-05!GO:0015630;microtubule cytoskeleton;1.86032112325594e-05!GO:0004298;threonine endopeptidase activity;1.89173046972571e-05!GO:0005798;Golgi-associated vesicle;1.98929200831499e-05!GO:0003697;single-stranded DNA binding;2.01950945534825e-05!GO:0000139;Golgi membrane;2.2995940911245e-05!GO:0032446;protein modification by small protein conjugation;2.31411910421295e-05!GO:0050794;regulation of cellular process;2.43467664009539e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.70649036278611e-05!GO:0003713;transcription coactivator activity;2.84535689959311e-05!GO:0000786;nucleosome;2.90060597815699e-05!GO:0032561;guanyl ribonucleotide binding;3.07323591235782e-05!GO:0019001;guanyl nucleotide binding;3.07323591235782e-05!GO:0031410;cytoplasmic vesicle;3.07438034015827e-05!GO:0005770;late endosome;3.2481361786881e-05!GO:0016787;hydrolase activity;3.48693037831783e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.4876769293844e-05!GO:0003724;RNA helicase activity;3.5074412967419e-05!GO:0008092;cytoskeletal protein binding;3.56522294982921e-05!GO:0007010;cytoskeleton organization and biogenesis;3.56522294982921e-05!GO:0031982;vesicle;3.64821785312391e-05!GO:0051329;interphase of mitotic cell cycle;3.87637115049949e-05!GO:0005905;coated pit;3.94891512376688e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.03549898358972e-05!GO:0000245;spliceosome assembly;4.77679118977621e-05!GO:0008361;regulation of cell size;5.07655092083573e-05!GO:0016049;cell growth;5.67058966028084e-05!GO:0044262;cellular carbohydrate metabolic process;6.0927140410041e-05!GO:0000279;M phase;6.17825830902647e-05!GO:0033116;ER-Golgi intermediate compartment membrane;6.19129054822254e-05!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.25723818533296e-05!GO:0015399;primary active transmembrane transporter activity;6.25723818533296e-05!GO:0030867;rough endoplasmic reticulum membrane;6.25723818533296e-05!GO:0001558;regulation of cell growth;6.68499054823277e-05!GO:0044440;endosomal part;6.74837776066055e-05!GO:0010008;endosome membrane;6.74837776066055e-05!GO:0043566;structure-specific DNA binding;7.41442979602099e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.52673812478745e-05!GO:0051325;interphase;8.25943092053081e-05!GO:0016779;nucleotidyltransferase activity;8.26827838847138e-05!GO:0005773;vacuole;8.91802580848629e-05!GO:0005762;mitochondrial large ribosomal subunit;8.91802580848629e-05!GO:0000315;organellar large ribosomal subunit;8.91802580848629e-05!GO:0006613;cotranslational protein targeting to membrane;9.20659800884506e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.25445625819333e-05!GO:0015980;energy derivation by oxidation of organic compounds;0.00012184981474457!GO:0009892;negative regulation of metabolic process;0.000129882906488426!GO:0051789;response to protein stimulus;0.000150586125690166!GO:0006986;response to unfolded protein;0.000150586125690166!GO:0051028;mRNA transport;0.000152026267730423!GO:0043623;cellular protein complex assembly;0.000154257855007825!GO:0031968;organelle outer membrane;0.000154257855007825!GO:0048518;positive regulation of biological process;0.000154877682416289!GO:0065009;regulation of a molecular function;0.000157435220011182!GO:0019899;enzyme binding;0.000164359485138314!GO:0008654;phospholipid biosynthetic process;0.000190850143762917!GO:0019867;outer membrane;0.000203371814867402!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000206336778725675!GO:0003899;DNA-directed RNA polymerase activity;0.000214019494497744!GO:0009165;nucleotide biosynthetic process;0.000221114458630525!GO:0016044;membrane organization and biogenesis;0.000230687568233009!GO:0007243;protein kinase cascade;0.000242533530786086!GO:0005741;mitochondrial outer membrane;0.000245723383230286!GO:0005048;signal sequence binding;0.000254186348014049!GO:0008186;RNA-dependent ATPase activity;0.000257006772819021!GO:0016859;cis-trans isomerase activity;0.000261592020645571!GO:0051427;hormone receptor binding;0.000261592020645571!GO:0045941;positive regulation of transcription;0.000284226142932487!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000326394220993471!GO:0005885;Arp2/3 protein complex;0.000334385889284127!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000388126757146696!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000421382319458058!GO:0008250;oligosaccharyl transferase complex;0.000479906531697708!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000523344117386421!GO:0000151;ubiquitin ligase complex;0.000526242496793317!GO:0035257;nuclear hormone receptor binding;0.000537240676003814!GO:0005813;centrosome;0.000567956694113551!GO:0006082;organic acid metabolic process;0.000639962996778577!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.000675600757481151!GO:0030027;lamellipodium;0.000708695877991397!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000725391015214999!GO:0004004;ATP-dependent RNA helicase activity;0.000740237506713066!GO:0030663;COPI coated vesicle membrane;0.000762908872081932!GO:0030126;COPI vesicle coat;0.000762908872081932!GO:0006414;translational elongation;0.000767240047027291!GO:0019752;carboxylic acid metabolic process;0.000780763464786987!GO:0004576;oligosaccharyl transferase activity;0.000781612292124145!GO:0008632;apoptotic program;0.000786215212944023!GO:0019843;rRNA binding;0.000791719745665376!GO:0043021;ribonucleoprotein binding;0.000791719745665376!GO:0045893;positive regulation of transcription, DNA-dependent;0.000792365020029472!GO:0043284;biopolymer biosynthetic process;0.000800287688019388!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00086877394619207!GO:0043492;ATPase activity, coupled to movement of substances;0.000886826552719207!GO:0051920;peroxiredoxin activity;0.000902311066599905!GO:0000323;lytic vacuole;0.000945843808999238!GO:0005764;lysosome;0.000945843808999238!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000969016984763041!GO:0030137;COPI-coated vesicle;0.000981992459786427!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00100814553537881!GO:0005769;early endosome;0.00101553127403695!GO:0005815;microtubule organizing center;0.00105941792268412!GO:0007264;small GTPase mediated signal transduction;0.00113106656315377!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00115287756150437!GO:0007050;cell cycle arrest;0.00116204720775429!GO:0016481;negative regulation of transcription;0.00119404429672063!GO:0040008;regulation of growth;0.00129950959537676!GO:0006612;protein targeting to membrane;0.00130000972956653!GO:0007006;mitochondrial membrane organization and biogenesis;0.00130228658366078!GO:0050789;regulation of biological process;0.00131844594122257!GO:0018196;peptidyl-asparagine modification;0.0013697255351581!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0013697255351581!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00151361698471946!GO:0043681;protein import into mitochondrion;0.00159452054124578!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00174173245874002!GO:0030658;transport vesicle membrane;0.00178570502906707!GO:0006839;mitochondrial transport;0.00178570502906707!GO:0006626;protein targeting to mitochondrion;0.00180302149982511!GO:0000314;organellar small ribosomal subunit;0.00192232226968586!GO:0005763;mitochondrial small ribosomal subunit;0.00192232226968586!GO:0051101;regulation of DNA binding;0.00195457907806109!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00203576278587277!GO:0042802;identical protein binding;0.00205253550463714!GO:0030132;clathrin coat of coated pit;0.00216496950960344!GO:0030659;cytoplasmic vesicle membrane;0.00219858986560131!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00228044499969646!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00228044499969646!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00228044499969646!GO:0048468;cell development;0.00232391384042347!GO:0006891;intra-Golgi vesicle-mediated transport;0.00234361740856352!GO:0051270;regulation of cell motility;0.00238541107283732!GO:0001726;ruffle;0.00241225111455234!GO:0030133;transport vesicle;0.00266358759267608!GO:0015992;proton transport;0.00267579203121706!GO:0030134;ER to Golgi transport vesicle;0.00281009654250401!GO:0005819;spindle;0.00285262694218323!GO:0051168;nuclear export;0.00288832293360571!GO:0006595;polyamine metabolic process;0.00300035806959371!GO:0008033;tRNA processing;0.00309461393536915!GO:0006818;hydrogen transport;0.00315903906506678!GO:0031543;peptidyl-proline dioxygenase activity;0.00327247492132153!GO:0046483;heterocycle metabolic process;0.00336001942864994!GO:0048487;beta-tubulin binding;0.00341544994369972!GO:0006520;amino acid metabolic process;0.00370226984945118!GO:0044433;cytoplasmic vesicle part;0.00374480170132782!GO:0044452;nucleolar part;0.00374480170132782!GO:0030127;COPII vesicle coat;0.00406401301093772!GO:0012507;ER to Golgi transport vesicle membrane;0.00406401301093772!GO:0016197;endosome transport;0.00407147167572536!GO:0046474;glycerophospholipid biosynthetic process;0.00407471243431286!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00421439374496107!GO:0000059;protein import into nucleus, docking;0.00432149830885369!GO:0030118;clathrin coat;0.00432620901234715!GO:0017166;vinculin binding;0.00433052542234688!GO:0008610;lipid biosynthetic process;0.00439002777267593!GO:0030176;integral to endoplasmic reticulum membrane;0.00468925028189938!GO:0030660;Golgi-associated vesicle membrane;0.00477128825653924!GO:0030521;androgen receptor signaling pathway;0.00482813387496895!GO:0040011;locomotion;0.00482813387496895!GO:0031418;L-ascorbic acid binding;0.00493657212677327!GO:0045792;negative regulation of cell size;0.00506680554420789!GO:0048471;perinuclear region of cytoplasm;0.00508937493805148!GO:0000049;tRNA binding;0.005174811309191!GO:0022890;inorganic cation transmembrane transporter activity;0.00521531502953923!GO:0035258;steroid hormone receptor binding;0.00528823857650631!GO:0006950;response to stress;0.00554664883756751!GO:0007162;negative regulation of cell adhesion;0.00554949662432304!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00565452445398015!GO:0006778;porphyrin metabolic process;0.00568342690672742!GO:0033013;tetrapyrrole metabolic process;0.00568342690672742!GO:0019318;hexose metabolic process;0.00594072975353825!GO:0051098;regulation of binding;0.00606358408241638!GO:0008139;nuclear localization sequence binding;0.00615346807891161!GO:0005791;rough endoplasmic reticulum;0.00634241192891901!GO:0019798;procollagen-proline dioxygenase activity;0.0064034382229251!GO:0030308;negative regulation of cell growth;0.00643636697751603!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00677601819002524!GO:0006897;endocytosis;0.00687273345403428!GO:0010324;membrane invagination;0.00687273345403428!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00702523220051565!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00702523220051565!GO:0040012;regulation of locomotion;0.00702523220051565!GO:0004674;protein serine/threonine kinase activity;0.00702523220051565!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00707495926896789!GO:0008047;enzyme activator activity;0.00716998958351522!GO:0043433;negative regulation of transcription factor activity;0.00718191053480658!GO:0015631;tubulin binding;0.00721475812363403!GO:0006261;DNA-dependent DNA replication;0.00726523112671789!GO:0005874;microtubule;0.00731442000951002!GO:0046467;membrane lipid biosynthetic process;0.00773861804196908!GO:0032507;maintenance of cellular protein localization;0.00805074239262491!GO:0042168;heme metabolic process;0.00805418756309987!GO:0000082;G1/S transition of mitotic cell cycle;0.00809484838459523!GO:0005684;U2-dependent spliceosome;0.00827597054629832!GO:0009893;positive regulation of metabolic process;0.00878826444030993!GO:0016363;nuclear matrix;0.00881388451774002!GO:0016126;sterol biosynthetic process;0.00896485900927685!GO:0006007;glucose catabolic process;0.00935336751283085!GO:0008283;cell proliferation;0.0099225431930253!GO:0003729;mRNA binding;0.00994199057703198!GO:0006740;NADPH regeneration;0.00997062456715136!GO:0006098;pentose-phosphate shunt;0.00997062456715136!GO:0007265;Ras protein signal transduction;0.00999674688641635!GO:0051252;regulation of RNA metabolic process;0.010200366391203!GO:0005862;muscle thin filament tropomyosin;0.010200366391203!GO:0016301;kinase activity;0.0102326783499609!GO:0005774;vacuolar membrane;0.0102724453094057!GO:0005996;monosaccharide metabolic process;0.0103281606409495!GO:0046489;phosphoinositide biosynthetic process;0.0104548933358459!GO:0003682;chromatin binding;0.0105491324204174!GO:0009967;positive regulation of signal transduction;0.0106642977195274!GO:0031072;heat shock protein binding;0.0106677085448517!GO:0001944;vasculature development;0.0108768651719491!GO:0003779;actin binding;0.0109171538534786!GO:0048500;signal recognition particle;0.0109171538534786!GO:0006807;nitrogen compound metabolic process;0.010938420331974!GO:0022408;negative regulation of cell-cell adhesion;0.0109710893787658!GO:0012506;vesicle membrane;0.0119259311272227!GO:0004177;aminopeptidase activity;0.0120942882561739!GO:0045936;negative regulation of phosphate metabolic process;0.0120942882561739!GO:0030880;RNA polymerase complex;0.0121831571423329!GO:0006417;regulation of translation;0.012348580761062!GO:0001568;blood vessel development;0.0127429245528779!GO:0045185;maintenance of protein localization;0.0129004911631233!GO:0051235;maintenance of localization;0.0133743891076096!GO:0006402;mRNA catabolic process;0.0133743891076096!GO:0051287;NAD binding;0.0137950739062163!GO:0031124;mRNA 3'-end processing;0.014004580490114!GO:0001666;response to hypoxia;0.0142507724371967!GO:0006118;electron transport;0.0142507724371967!GO:0009308;amine metabolic process;0.014288505777821!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.014288505777821!GO:0015002;heme-copper terminal oxidase activity;0.014288505777821!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.014288505777821!GO:0004129;cytochrome-c oxidase activity;0.014288505777821!GO:0006509;membrane protein ectodomain proteolysis;0.0143076636094551!GO:0033619;membrane protein proteolysis;0.0143076636094551!GO:0003684;damaged DNA binding;0.0149516725388437!GO:0006739;NADP metabolic process;0.0151032003125426!GO:0006401;RNA catabolic process;0.0151847502027973!GO:0022415;viral reproductive process;0.0152109462452344!GO:0051651;maintenance of cellular localization;0.0152662882957631!GO:0005100;Rho GTPase activator activity;0.0155829114045068!GO:0008652;amino acid biosynthetic process;0.0155988010572356!GO:0031902;late endosome membrane;0.0155988010572356!GO:0033673;negative regulation of kinase activity;0.015723051923218!GO:0006469;negative regulation of protein kinase activity;0.015723051923218!GO:0050662;coenzyme binding;0.015890017872298!GO:0046822;regulation of nucleocytoplasmic transport;0.0162885352088317!GO:0046519;sphingoid metabolic process;0.0163376773005087!GO:0050790;regulation of catalytic activity;0.0163828656321268!GO:0030119;AP-type membrane coat adaptor complex;0.0164183995073581!GO:0030518;steroid hormone receptor signaling pathway;0.0164417787955988!GO:0008637;apoptotic mitochondrial changes;0.0164417787955988!GO:0005975;carbohydrate metabolic process;0.0167640909618161!GO:0051348;negative regulation of transferase activity;0.0168314798177172!GO:0007030;Golgi organization and biogenesis;0.0171497176821204!GO:0006779;porphyrin biosynthetic process;0.017164453995904!GO:0033014;tetrapyrrole biosynthetic process;0.017164453995904!GO:0030865;cortical cytoskeleton organization and biogenesis;0.017225115431345!GO:0005832;chaperonin-containing T-complex;0.0174025868456938!GO:0006383;transcription from RNA polymerase III promoter;0.0174025868456938!GO:0009889;regulation of biosynthetic process;0.0176543852808365!GO:0031272;regulation of pseudopodium formation;0.0181094110257774!GO:0031269;pseudopodium formation;0.0181094110257774!GO:0031344;regulation of cell projection organization and biogenesis;0.0181094110257774!GO:0031268;pseudopodium organization and biogenesis;0.0181094110257774!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0181094110257774!GO:0031274;positive regulation of pseudopodium formation;0.0181094110257774!GO:0051539;4 iron, 4 sulfur cluster binding;0.018322853783234!GO:0003746;translation elongation factor activity;0.0183429068778905!GO:0008312;7S RNA binding;0.0184966786435409!GO:0045892;negative regulation of transcription, DNA-dependent;0.0189617197509837!GO:0001953;negative regulation of cell-matrix adhesion;0.0190543708676114!GO:0031529;ruffle organization and biogenesis;0.0190754185482349!GO:0043488;regulation of mRNA stability;0.0196692477514235!GO:0043487;regulation of RNA stability;0.0196692477514235!GO:0005092;GDP-dissociation inhibitor activity;0.0199033463435702!GO:0044437;vacuolar part;0.0200240703920726!GO:0006979;response to oxidative stress;0.0200240703920726!GO:0043065;positive regulation of apoptosis;0.0200773962888041!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0205019987923099!GO:0043022;ribosome binding;0.0206822851648199!GO:0001952;regulation of cell-matrix adhesion;0.0207660291981611!GO:0051087;chaperone binding;0.0212006685754342!GO:0009303;rRNA transcription;0.0212330632781259!GO:0048037;cofactor binding;0.0212330632781259!GO:0030131;clathrin adaptor complex;0.021413416680213!GO:0006352;transcription initiation;0.0215375684283077!GO:0031326;regulation of cellular biosynthetic process;0.0218497652546362!GO:0051272;positive regulation of cell motility;0.0219667431995571!GO:0040017;positive regulation of locomotion;0.0219667431995571!GO:0030125;clathrin vesicle coat;0.0219912314034429!GO:0030665;clathrin coated vesicle membrane;0.0219912314034429!GO:0006519;amino acid and derivative metabolic process;0.0223574531937394!GO:0006611;protein export from nucleus;0.0226810155598543!GO:0051271;negative regulation of cell motility;0.0227622839330749!GO:0003756;protein disulfide isomerase activity;0.0227622839330749!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0227622839330749!GO:0000287;magnesium ion binding;0.0228384455870489!GO:0050811;GABA receptor binding;0.0230024067007988!GO:0043068;positive regulation of programmed cell death;0.0231990685580255!GO:0003711;transcription elongation regulator activity;0.0232463025879463!GO:0007040;lysosome organization and biogenesis;0.0233666855568808!GO:0006783;heme biosynthetic process;0.0235966978205594!GO:0030041;actin filament polymerization;0.023667754332065!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0239905256137503!GO:0000428;DNA-directed RNA polymerase complex;0.0239905256137503!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0241960400390663!GO:0045047;protein targeting to ER;0.0241960400390663!GO:0051059;NF-kappaB binding;0.0242227870121517!GO:0051716;cellular response to stimulus;0.0245401852987431!GO:0005096;GTPase activator activity;0.0251574688026246!GO:0035035;histone acetyltransferase binding;0.0255807465036969!GO:0032508;DNA duplex unwinding;0.0259821705331945!GO:0032392;DNA geometric change;0.0259821705331945!GO:0030833;regulation of actin filament polymerization;0.0259827194850814!GO:0000096;sulfur amino acid metabolic process;0.0267714398263341!GO:0006607;NLS-bearing substrate import into nucleus;0.0267714398263341!GO:0031301;integral to organelle membrane;0.0269352468288362!GO:0032906;transforming growth factor-beta2 production;0.0275796067003635!GO:0032909;regulation of transforming growth factor-beta2 production;0.0275796067003635!GO:0042326;negative regulation of phosphorylation;0.0276597987787853!GO:0016584;nucleosome positioning;0.0280976216141886!GO:0007242;intracellular signaling cascade;0.0284080708479963!GO:0046365;monosaccharide catabolic process;0.0284080708479963!GO:0006405;RNA export from nucleus;0.0284790825780229!GO:0000209;protein polyubiquitination;0.0290122149056653!GO:0003678;DNA helicase activity;0.0293683234319506!GO:0051090;regulation of transcription factor activity;0.029438206438562!GO:0008538;proteasome activator activity;0.0296108792731244!GO:0003690;double-stranded DNA binding;0.0298166484904667!GO:0006984;ER-nuclear signaling pathway;0.0301343884069975!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0301343884069975!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0315014932170408!GO:0010257;NADH dehydrogenase complex assembly;0.0315014932170408!GO:0033108;mitochondrial respiratory chain complex assembly;0.0315014932170408!GO:0000339;RNA cap binding;0.0315695595713079!GO:0005765;lysosomal membrane;0.0315695595713079!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0315701657356008!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.0316380105618876!GO:0005869;dynactin complex;0.0316930192714516!GO:0030433;ER-associated protein catabolic process;0.0320684957169786!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0320684957169786!GO:0015036;disulfide oxidoreductase activity;0.0327749315378247!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0327894389140631!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.0329177033926039!GO:0030334;regulation of cell migration;0.0331265363409062!GO:0050681;androgen receptor binding;0.0334156979326979!GO:0006518;peptide metabolic process;0.0336532770210318!GO:0008147;structural constituent of bone;0.0336532770210318!GO:0000075;cell cycle checkpoint;0.0339337396715672!GO:0065007;biological regulation;0.0346622235228499!GO:0008154;actin polymerization and/or depolymerization;0.0351195319012607!GO:0031901;early endosome membrane;0.0351195319012607!GO:0048144;fibroblast proliferation;0.0356587843003449!GO:0048145;regulation of fibroblast proliferation;0.0356587843003449!GO:0006378;mRNA polyadenylation;0.0358115111156848!GO:0005637;nuclear inner membrane;0.0358298275855795!GO:0043189;H4/H2A histone acetyltransferase complex;0.035833381436628!GO:0046426;negative regulation of JAK-STAT cascade;0.0360351593471085!GO:0007346;regulation of progression through mitotic cell cycle;0.0361563697607023!GO:0045926;negative regulation of growth;0.0362826797418372!GO:0006672;ceramide metabolic process;0.0367355570177105!GO:0030031;cell projection biogenesis;0.0373130495842528!GO:0051128;regulation of cellular component organization and biogenesis;0.037688918707855!GO:0031325;positive regulation of cellular metabolic process;0.0381786433370444!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0385679985698961!GO:0030032;lamellipodium biogenesis;0.0389783673235327!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0395200212540688!GO:0019320;hexose catabolic process;0.0398404002425149!GO:0007569;cell aging;0.0400423665497926!GO:0006268;DNA unwinding during replication;0.0406774546428258!GO:0006650;glycerophospholipid metabolic process;0.0417741000611803!GO:0006066;alcohol metabolic process;0.0422768259063302!GO:0008320;protein transmembrane transporter activity;0.0424084166293072!GO:0030496;midbody;0.0424084166293072!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0427470963956018!GO:0006596;polyamine biosynthetic process;0.0428096335168809!GO:0004656;procollagen-proline 4-dioxygenase activity;0.0434635702020499!GO:0031545;peptidyl-proline 4-dioxygenase activity;0.0434635702020499!GO:0007033;vacuole organization and biogenesis;0.0436632760716688!GO:0006289;nucleotide-excision repair;0.0439552553502403!GO:0016272;prefoldin complex;0.0442092830407475!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0444733908301927!GO:0045045;secretory pathway;0.045439546845031!GO:0031123;RNA 3'-end processing;0.0457236309623304!GO:0033559;unsaturated fatty acid metabolic process;0.045831569280829!GO:0006636;unsaturated fatty acid biosynthetic process;0.045831569280829!GO:0040013;negative regulation of locomotion;0.0468126662244136!GO:0009112;nucleobase metabolic process;0.0470647606704415!GO:0046164;alcohol catabolic process;0.0471801853898525!GO:0043495;protein anchor;0.0476235374683167!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0481202685760841!GO:0000792;heterochromatin;0.048165625064508!GO:0035267;NuA4 histone acetyltransferase complex;0.0482178158295062!GO:0050178;phenylpyruvate tautomerase activity;0.0484681242127774!GO:0000123;histone acetyltransferase complex;0.0485929752007197!GO:0007051;spindle organization and biogenesis;0.0487695316323249!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0487695316323249!GO:0006790;sulfur metabolic process;0.0490126335406864!GO:0022884;macromolecule transmembrane transporter activity;0.0490126335406864!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0490126335406864!GO:0006308;DNA catabolic process;0.0491599792443231!GO:0001725;stress fiber;0.0496387064261032!GO:0032432;actin filament bundle;0.0496387064261032 | |||
|sample_id=11345 | |sample_id=11345 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 105: | ||
|sample_tissue=heart | |sample_tissue=heart | ||
|top_motifs=IKZF1:1.96794455276;SRF:1.76913803398;POU3F1..4:1.62793989759;GTF2A1,2:1.62383309185;GLI1..3:1.58983106738;HOX{A5,B5}:1.38032846644;ZNF238:1.16745790634;TFAP4:1.07580503439;PPARG:1.05357018835;ZNF148:1.03281186908;HIF1A:0.991010629214;TP53:0.981940659854;EBF1:0.977661812354;SPZ1:0.952262001121;LHX3,4:0.920832345469;POU2F1..3:0.899582142628;GCM1,2:0.885929621611;DBP:0.832942730355;EN1,2:0.80115179832;SOX{8,9,10}:0.794886750047;RXRA_VDR{dimer}:0.742188797178;XCPE1{core}:0.732903562316;NFATC1..3:0.707114873231;MAFB:0.699004979619;SMAD1..7,9:0.698164334426;TLX1..3_NFIC{dimer}:0.687679032927;ONECUT1,2:0.687047586988;HSF1,2:0.64832481849;UFEwm:0.639677540735;TEAD1:0.638037629935;TFCP2:0.620561572237;ATF6:0.616239831222;HMGA1,2:0.613038718684;ZIC1..3:0.590095147132;NANOG{mouse}:0.584791947111;XBP1:0.571357893072;HOXA9_MEIS1:0.565157843244;AR:0.540068051324;PAX8:0.530066383586;TBP:0.509881519631;TAL1_TCF{3,4,12}:0.502169650324;SOX17:0.498116303178;ZNF423:0.487607523848;ZBTB6:0.472297430557;HAND1,2:0.454651211202;ESR1:0.441326220217;NR6A1:0.436689821594;NFE2L2:0.432794117637;HLF:0.375861904735;LEF1_TCF7_TCF7L1,2:0.349131161956;GTF2I:0.338788736662;NANOG:0.336472791537;CEBPA,B_DDIT3:0.317178761661;GFI1B:0.304643876064;MYBL2:0.302668227928;NKX2-2,8:0.297148294646;PAX3,7:0.29329695083;TFAP2{A,C}:0.280219392731;CDC5L:0.278424811288;BACH2:0.276848741351;STAT2,4,6:0.273159759785;HES1:0.267993860727;RXR{A,B,G}:0.260275025752;MTE{core}:0.254498047508;HMX1:0.231254792314;NFE2L1:0.21685504017;FOXL1:0.209492962313;NR5A1,2:0.186233866056;NFKB1_REL_RELA:0.180072411696;FOS_FOS{B,L1}_JUN{B,D}:0.173120013696;ADNP_IRX_SIX_ZHX:0.163751729199;ALX4:0.15322863289;PBX1:0.144466964375;SOX2:0.14437776282;TFAP2B:0.134644093281;STAT5{A,B}:0.133259290253;REST:0.112969174679;MEF2{A,B,C,D}:0.112879378166;KLF4:0.102288513801;NFE2:0.0904099674931;NKX3-2:0.089726786906;PAX2:0.076660485878;NKX2-1,4:0.0617814793549;FOSL2:0.0521074171088;NHLH1,2:0.0372159687926;ETS1,2:0.0315450657041;MAZ:0.0247154100864;HNF1A:0.0206526394348;GATA6:0.0153932974974;ATF2:0.0141168745708;NR3C1:0.00531196623648;JUN:0.00523248781429;ZNF384:-0.00616944267628;HIC1:-0.00719744510028;NKX3-1:-0.0235402960336;POU1F1:-0.0384647909815;NKX2-3_NKX2-5:-0.0441188212329;PATZ1:-0.0448139939267;TFDP1:-0.0484022262561;SP1:-0.090027143626;ESRRA:-0.103542902569;bHLH_family:-0.106962599532;TOPORS:-0.117009048421;HBP1_HMGB_SSRP1_UBTF:-0.120412840028;GFI1:-0.143136864515;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.146557359818;AHR_ARNT_ARNT2:-0.157841652925;MYB:-0.158779246279;PITX1..3:-0.160190568631;NR1H4:-0.167164354338;FOXA2:-0.171099848462;HNF4A_NR2F1,2:-0.17359963133;LMO2:-0.175740539719;PAX6:-0.177057986084;TBX4,5:-0.210137948068;MZF1:-0.211873669754;CRX:-0.220140881192;ZNF143:-0.224518664847;E2F1..5:-0.225658598499;PRRX1,2:-0.246142913361;RORA:-0.246723497303;ELK1,4_GABP{A,B1}:-0.249272338479;NFIX:-0.251051141267;POU5F1:-0.252470382146;RFX1:-0.259850137105;OCT4_SOX2{dimer}:-0.260557533439;NFIL3:-0.270261158339;AIRE:-0.272767455997;FOX{I1,J2}:-0.275218634115;PAX5:-0.282366461256;SPIB:-0.291178715271;POU6F1:-0.309461117285;FOX{F1,F2,J1}:-0.335041439645;ELF1,2,4:-0.352959857039;NFY{A,B,C}:-0.355952526776;MTF1:-0.375385180829;EVI1:-0.378575450677;RREB1:-0.403541044604;PRDM1:-0.405082669104;MYOD1:-0.425732606448;GZF1:-0.43298244216;MED-1{core}:-0.482532833025;SPI1:-0.482616386755;RUNX1..3:-0.487838899197;FOX{D1,D2}:-0.512756723964;SNAI1..3:-0.539194207804;VSX1,2:-0.564183027827;IKZF2:-0.574341682238;EP300:-0.575952628549;FOXP3:-0.589502878624;FOXQ1:-0.621978658263;ARID5B:-0.646702076957;HOX{A4,D4}:-0.648906392404;ATF5_CREB3:-0.658196999368;ATF4:-0.658879525949;ZEB1:-0.666075204944;NRF1:-0.669915442701;GATA4:-0.683135434893;EGR1..3:-0.708882331209;ZFP161:-0.718544243009;MYFfamily:-0.751785657358;TEF:-0.784472587907;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.793277084229;TLX2:-0.800125758965;CUX2:-0.82004493597;SOX5:-0.825392463814;PAX1,9:-0.83686407589;CDX1,2,4:-0.845242438797;TGIF1:-0.850131962302;SREBF1,2:-0.886337051194;IRF7:-0.908424748274;HOX{A6,A7,B6,B7}:-0.920730288459;CREB1:-0.933668249673;YY1:-0.946781090054;PAX4:-0.950798950081;RBPJ:-0.962890081135;DMAP1_NCOR{1,2}_SMARC:-0.963546470238;FOXN1:-0.975215254174;IRF1,2:-1.00689747791;BPTF:-1.01368163786;FOXP1:-1.03314863646;BREu{core}:-1.07097185166;T:-1.12873765719;ZBTB16:-1.21715759587;RFX2..5_RFXANK_RFXAP:-1.21998687986;FOXM1:-1.32641239969;NKX6-1,2:-1.3323158349;STAT1,3:-1.35393882002;ALX1:-1.48130896224;FOXD3:-1.53888125363;FOXO1,3,4:-1.58288412683;PDX1:-1.61104572826 | |top_motifs=IKZF1:1.96794455276;SRF:1.76913803398;POU3F1..4:1.62793989759;GTF2A1,2:1.62383309185;GLI1..3:1.58983106738;HOX{A5,B5}:1.38032846644;ZNF238:1.16745790634;TFAP4:1.07580503439;PPARG:1.05357018835;ZNF148:1.03281186908;HIF1A:0.991010629214;TP53:0.981940659854;EBF1:0.977661812354;SPZ1:0.952262001121;LHX3,4:0.920832345469;POU2F1..3:0.899582142628;GCM1,2:0.885929621611;DBP:0.832942730355;EN1,2:0.80115179832;SOX{8,9,10}:0.794886750047;RXRA_VDR{dimer}:0.742188797178;XCPE1{core}:0.732903562316;NFATC1..3:0.707114873231;MAFB:0.699004979619;SMAD1..7,9:0.698164334426;TLX1..3_NFIC{dimer}:0.687679032927;ONECUT1,2:0.687047586988;HSF1,2:0.64832481849;UFEwm:0.639677540735;TEAD1:0.638037629935;TFCP2:0.620561572237;ATF6:0.616239831222;HMGA1,2:0.613038718684;ZIC1..3:0.590095147132;NANOG{mouse}:0.584791947111;XBP1:0.571357893072;HOXA9_MEIS1:0.565157843244;AR:0.540068051324;PAX8:0.530066383586;TBP:0.509881519631;TAL1_TCF{3,4,12}:0.502169650324;SOX17:0.498116303178;ZNF423:0.487607523848;ZBTB6:0.472297430557;HAND1,2:0.454651211202;ESR1:0.441326220217;NR6A1:0.436689821594;NFE2L2:0.432794117637;HLF:0.375861904735;LEF1_TCF7_TCF7L1,2:0.349131161956;GTF2I:0.338788736662;NANOG:0.336472791537;CEBPA,B_DDIT3:0.317178761661;GFI1B:0.304643876064;MYBL2:0.302668227928;NKX2-2,8:0.297148294646;PAX3,7:0.29329695083;TFAP2{A,C}:0.280219392731;CDC5L:0.278424811288;BACH2:0.276848741351;STAT2,4,6:0.273159759785;HES1:0.267993860727;RXR{A,B,G}:0.260275025752;MTE{core}:0.254498047508;HMX1:0.231254792314;NFE2L1:0.21685504017;FOXL1:0.209492962313;NR5A1,2:0.186233866056;NFKB1_REL_RELA:0.180072411696;FOS_FOS{B,L1}_JUN{B,D}:0.173120013696;ADNP_IRX_SIX_ZHX:0.163751729199;ALX4:0.15322863289;PBX1:0.144466964375;SOX2:0.14437776282;TFAP2B:0.134644093281;STAT5{A,B}:0.133259290253;REST:0.112969174679;MEF2{A,B,C,D}:0.112879378166;KLF4:0.102288513801;NFE2:0.0904099674931;NKX3-2:0.089726786906;PAX2:0.076660485878;NKX2-1,4:0.0617814793549;FOSL2:0.0521074171088;NHLH1,2:0.0372159687926;ETS1,2:0.0315450657041;MAZ:0.0247154100864;HNF1A:0.0206526394348;GATA6:0.0153932974974;ATF2:0.0141168745708;NR3C1:0.00531196623648;JUN:0.00523248781429;ZNF384:-0.00616944267628;HIC1:-0.00719744510028;NKX3-1:-0.0235402960336;POU1F1:-0.0384647909815;NKX2-3_NKX2-5:-0.0441188212329;PATZ1:-0.0448139939267;TFDP1:-0.0484022262561;SP1:-0.090027143626;ESRRA:-0.103542902569;bHLH_family:-0.106962599532;TOPORS:-0.117009048421;HBP1_HMGB_SSRP1_UBTF:-0.120412840028;GFI1:-0.143136864515;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.146557359818;AHR_ARNT_ARNT2:-0.157841652925;MYB:-0.158779246279;PITX1..3:-0.160190568631;NR1H4:-0.167164354338;FOXA2:-0.171099848462;HNF4A_NR2F1,2:-0.17359963133;LMO2:-0.175740539719;PAX6:-0.177057986084;TBX4,5:-0.210137948068;MZF1:-0.211873669754;CRX:-0.220140881192;ZNF143:-0.224518664847;E2F1..5:-0.225658598499;PRRX1,2:-0.246142913361;RORA:-0.246723497303;ELK1,4_GABP{A,B1}:-0.249272338479;NFIX:-0.251051141267;POU5F1:-0.252470382146;RFX1:-0.259850137105;OCT4_SOX2{dimer}:-0.260557533439;NFIL3:-0.270261158339;AIRE:-0.272767455997;FOX{I1,J2}:-0.275218634115;PAX5:-0.282366461256;SPIB:-0.291178715271;POU6F1:-0.309461117285;FOX{F1,F2,J1}:-0.335041439645;ELF1,2,4:-0.352959857039;NFY{A,B,C}:-0.355952526776;MTF1:-0.375385180829;EVI1:-0.378575450677;RREB1:-0.403541044604;PRDM1:-0.405082669104;MYOD1:-0.425732606448;GZF1:-0.43298244216;MED-1{core}:-0.482532833025;SPI1:-0.482616386755;RUNX1..3:-0.487838899197;FOX{D1,D2}:-0.512756723964;SNAI1..3:-0.539194207804;VSX1,2:-0.564183027827;IKZF2:-0.574341682238;EP300:-0.575952628549;FOXP3:-0.589502878624;FOXQ1:-0.621978658263;ARID5B:-0.646702076957;HOX{A4,D4}:-0.648906392404;ATF5_CREB3:-0.658196999368;ATF4:-0.658879525949;ZEB1:-0.666075204944;NRF1:-0.669915442701;GATA4:-0.683135434893;EGR1..3:-0.708882331209;ZFP161:-0.718544243009;MYFfamily:-0.751785657358;TEF:-0.784472587907;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.793277084229;TLX2:-0.800125758965;CUX2:-0.82004493597;SOX5:-0.825392463814;PAX1,9:-0.83686407589;CDX1,2,4:-0.845242438797;TGIF1:-0.850131962302;SREBF1,2:-0.886337051194;IRF7:-0.908424748274;HOX{A6,A7,B6,B7}:-0.920730288459;CREB1:-0.933668249673;YY1:-0.946781090054;PAX4:-0.950798950081;RBPJ:-0.962890081135;DMAP1_NCOR{1,2}_SMARC:-0.963546470238;FOXN1:-0.975215254174;IRF1,2:-1.00689747791;BPTF:-1.01368163786;FOXP1:-1.03314863646;BREu{core}:-1.07097185166;T:-1.12873765719;ZBTB16:-1.21715759587;RFX2..5_RFXANK_RFXAP:-1.21998687986;FOXM1:-1.32641239969;NKX6-1,2:-1.3323158349;STAT1,3:-1.35393882002;ALX1:-1.48130896224;FOXD3:-1.53888125363;FOXO1,3,4:-1.58288412683;PDX1:-1.61104572826 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11345-117G4;search_select_hide=table117:FF:11345-117G4 | |||
}} | }} | ||
Latest revision as of 17:53, 4 June 2020
| Name: | Fibroblast - Cardiac, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11378 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11378
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11378
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.217 |
| 10 | 10 | 0.842 |
| 100 | 100 | 0.587 |
| 101 | 101 | 0.383 |
| 102 | 102 | 0.779 |
| 103 | 103 | 0.408 |
| 104 | 104 | 0.195 |
| 105 | 105 | 0.153 |
| 106 | 106 | 0.0119 |
| 107 | 107 | 0.0189 |
| 108 | 108 | 0.463 |
| 109 | 109 | 0.0829 |
| 11 | 11 | 0.0555 |
| 110 | 110 | 0.353 |
| 111 | 111 | 0.817 |
| 112 | 112 | 0.658 |
| 113 | 113 | 0.625 |
| 114 | 114 | 0.261 |
| 115 | 115 | 0.172 |
| 116 | 116 | 0.0743 |
| 117 | 117 | 0.876 |
| 118 | 118 | 0.743 |
| 119 | 119 | 0.0743 |
| 12 | 12 | 0.892 |
| 120 | 120 | 0.203 |
| 121 | 121 | 0.502 |
| 122 | 122 | 0.932 |
| 123 | 123 | 0.0813 |
| 124 | 124 | 0.972 |
| 125 | 125 | 0.988 |
| 126 | 126 | 0.611 |
| 127 | 127 | 0.468 |
| 128 | 128 | 0.185 |
| 129 | 129 | 0.788 |
| 13 | 13 | 0.599 |
| 130 | 130 | 0.557 |
| 131 | 131 | 0.194 |
| 132 | 132 | 0.351 |
| 133 | 133 | 0.982 |
| 134 | 134 | 0.794 |
| 135 | 135 | 0.0482 |
| 136 | 136 | 0.666 |
| 137 | 137 | 0.476 |
| 138 | 138 | 0.546 |
| 139 | 139 | 0.0511 |
| 14 | 14 | 0.761 |
| 140 | 140 | 0.872 |
| 141 | 141 | 0.592 |
| 142 | 142 | 0.427 |
| 143 | 143 | 0.00832 |
| 144 | 144 | 0.83 |
| 145 | 145 | 0.156 |
| 146 | 146 | 0.176 |
| 147 | 147 | 0.411 |
| 148 | 148 | 0.622 |
| 149 | 149 | 0.0189 |
| 15 | 15 | 0.336 |
| 150 | 150 | 0.0639 |
| 151 | 151 | 0.62 |
| 152 | 152 | 0.0319 |
| 153 | 153 | 0.813 |
| 154 | 154 | 0.799 |
| 155 | 155 | 0.259 |
| 156 | 156 | 0.346 |
| 157 | 157 | 0.759 |
| 158 | 158 | 0.177 |
| 159 | 159 | 0.638 |
| 16 | 16 | 0.173 |
| 160 | 160 | 0.041 |
| 161 | 161 | 0.403 |
| 162 | 162 | 0.294 |
| 163 | 163 | 0.425 |
| 164 | 164 | 0.522 |
| 165 | 165 | 0.326 |
| 166 | 166 | 0.832 |
| 167 | 167 | 0.498 |
| 168 | 168 | 0.949 |
| 169 | 169 | 0.0243 |
| 17 | 17 | 0.105 |
| 18 | 18 | 0.0479 |
| 19 | 19 | 0.0382 |
| 2 | 2 | 0.527 |
| 20 | 20 | 0.427 |
| 21 | 21 | 0.753 |
| 22 | 22 | 0.159 |
| 23 | 23 | 0.00858 |
| 24 | 24 | 0.246 |
| 25 | 25 | 0.579 |
| 26 | 26 | 0.0566 |
| 27 | 27 | 0.604 |
| 28 | 28 | 0.259 |
| 29 | 29 | 0.846 |
| 3 | 3 | 0.44 |
| 30 | 30 | 0.512 |
| 31 | 31 | 0.553 |
| 32 | 32 | 4.97656e-8 |
| 33 | 33 | 0.575 |
| 34 | 34 | 0.137 |
| 35 | 35 | 0.902 |
| 36 | 36 | 0.81 |
| 37 | 37 | 0.118 |
| 38 | 38 | 0.558 |
| 39 | 39 | 0.33 |
| 4 | 4 | 0.25 |
| 40 | 40 | 0.207 |
| 41 | 41 | 0.671 |
| 42 | 42 | 0.609 |
| 43 | 43 | 0.173 |
| 44 | 44 | 0.484 |
| 45 | 45 | 0.346 |
| 46 | 46 | 0.0722 |
| 47 | 47 | 0.24 |
| 48 | 48 | 0.0624 |
| 49 | 49 | 0.206 |
| 5 | 5 | 0.371 |
| 50 | 50 | 0.724 |
| 51 | 51 | 0.654 |
| 52 | 52 | 0.649 |
| 53 | 53 | 0.629 |
| 54 | 54 | 0.355 |
| 55 | 55 | 0.868 |
| 56 | 56 | 0.657 |
| 57 | 57 | 0.234 |
| 58 | 58 | 0.888 |
| 59 | 59 | 0.00809 |
| 6 | 6 | 0.697 |
| 60 | 60 | 0.448 |
| 61 | 61 | 0.903 |
| 62 | 62 | 0.257 |
| 63 | 63 | 0.294 |
| 64 | 64 | 0.129 |
| 65 | 65 | 0.0442 |
| 66 | 66 | 0.444 |
| 67 | 67 | 0.269 |
| 68 | 68 | 0.0711 |
| 69 | 69 | 0.676 |
| 7 | 7 | 0.599 |
| 70 | 70 | 0.199 |
| 71 | 71 | 0.12 |
| 72 | 72 | 0.711 |
| 73 | 73 | 0.0291 |
| 74 | 74 | 0.903 |
| 75 | 75 | 0.485 |
| 76 | 76 | 0.525 |
| 77 | 77 | 0.033 |
| 78 | 78 | 0.428 |
| 79 | 79 | 0.00329 |
| 8 | 8 | 0.0588 |
| 80 | 80 | 0.513 |
| 81 | 81 | 0.79 |
| 82 | 82 | 0.747 |
| 83 | 83 | 0.592 |
| 84 | 84 | 0.672 |
| 85 | 85 | 0.0241 |
| 86 | 86 | 0.799 |
| 87 | 87 | 0.0721 |
| 88 | 88 | 0.112 |
| 89 | 89 | 0.0434 |
| 9 | 9 | 0.337 |
| 90 | 90 | 0.674 |
| 91 | 91 | 0.181 |
| 92 | 92 | 0.79 |
| 93 | 93 | 0.772 |
| 94 | 94 | 0.237 |
| 95 | 95 | 0.249 |
| 96 | 96 | 0.79 |
| 97 | 97 | 0.259 |
| 98 | 98 | 0.876 |
| 99 | 99 | 0.0345 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11378
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002494 (cardiocyte)
0000057 (fibroblast)
0002548 (cardiac fibroblast)
UBERON: Anatomy
0000468 (multi-cellular organism)
0007100 (primary circulatory organ)
0000948 (heart)
0002384 (connective tissue)
0000479 (tissue)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0010317 (germ layer / neural crest derived structure)
0004535 (cardiovascular system)
0001009 (circulatory system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000057 (fibroblast sample)
0000001 (sample)
0000059 (human cardiac fibroblast sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
