FF:11350-117G9: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00004884 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004884 | ||
|accession_numbers=CAGE;DRX008328;DRR009200;DRZ000625;DRZ002010;DRZ011975;DRZ013360 | |||
|accession_numbers_RNASeq=sRNA-Seq;DRX037215;DRR041581;DRZ007223 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001911,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002365,UBERON:0002530,UBERON:0010317,UBERON:0003100,UBERON:0002330 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:0002327 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000088 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.19!171.18!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.85!70.33!IRF6;;chr17:7493405..7493419,-!p1@SOX15!1.78!58.71!SOX15;;chr3:189507432..189507459,+!p1@TP63!1.77!57.55!TP63;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.55!BNC1;;chr3:111314186..111314204,-!p1@ZBED2!1.71!50.28!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.62!49.41!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.58!36.91!HES2;;chr17:7492684..7492778,-!p2@SOX15!1.51!64.81!SOX15;;chr13:73633131..73633149,+!p1@KLF5!1.44!274.36!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.37!22.67!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.17!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.34!55.51!OSR1;;chr12:54785074..54785122,-!p2@ZNF385A!1.27!26.74!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.73!TFCP2L1;;chr11:120107344..120107351,+!p1@POU2F3!1.26!20.93!POU2F3;;chr6:29648890..29648944,-!p1@ZFP57!1.22!15.69!ZFP57;;chr3:111314230..111314241,-!p2@ZBED2!1.22!15.69!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.40!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.20!25.87!DRAP1;;chr5:3595977..3595999,+!p1@IRX1!1.20!14.82!IRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.95!TFAP2A;;chr8:135725369..135725388,-!p3@ZFAT!1.14!18.02!ZFAT;;chr11:34642612..34642646,+!p1@EHF!1.14!12.79!EHF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!11.92!ZBED1;;chr12:66218598..66218645,+!p2@HMGA2!1.10!54.06!HMGA2;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.04!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.46!IRX2;;chr2:46524897..46524911,+!p2@EPAS1!1.04!27.90!EPAS1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.27!DRAP1;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!11.04!ZNF385A;;chr15:101069113..101069169,-!p1@CERS3!1.01!9.30!CERS3;;chr17:8027418..8027432,-!p1@HES7!1.00!9.01!HES7;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!77.31!PPP1R13L;;chr11:47236584..47236679,+!p1@DDB2!0.96!91.26!DDB2;;chr11:65667884..65667895,-!p2@FOSL1!0.96!32.55!FOSL1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.14!IRX1;;chr9:129376201..129376225,+!p1@LMX1B!0.93!7.56!LMX1B;;chr8:49833948..49833973,-!p2@SNAI2!0.91!46.79!SNAI2;;chr12:48298765..48298783,-!p2@VDR!0.87!13.95!VDR;;chr8:102504651..102504683,+!p1@GRHL2!0.87!6.39!GRHL2;;chr15:83953373..83953386,-!p2@BNC1!0.87!6.39!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!0.87!6.39!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.86!174.09!FOSL1;;chr12:54332608..54332636,+!p1@HOXC13!0.85!6.10!HOXC13;;chr8:128748308..128748324,+!p2@MYC!0.84!174.96!MYC;;chr8:49833978..49833996,-!p1@SNAI2!0.83!128.46!SNAI2;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.83!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.85!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.79!5.23!ZNF732;;chr13:73636516..73636532,+!p3@KLF5!0.78!5.81!KLF5;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.41!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.43!FOXD1;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr17:45928521..45928539,-!p1@SP6!0.77!4.94!SP6;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.94!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.77!4.94!TFAP2C;;chr11:65687362..65687436,+!p3@DRAP1!0.75!23.25!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.65!HOXC8;;chr1:209979449..209979460,-!p3@IRF6!0.75!4.65!IRF6;;chr18:3447536..3447542,+!p23@TGIF1!0.75!4.65!TGIF1;;chr5:3595961..3595975,+!p3@IRX1!0.75!4.65!IRX1;;chr8:10588010..10588030,-!p1@SOX7!0.75!4.65!SOX7;;chr3:189507460..189507471,+!p3@TP63!0.75!4.65!TP63;;chr4:206390..206444,+!p1@ZNF876P!0.74!8.43!ZNF876P;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.92!HMGA2;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.34!IFI16;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.72!HMGA2;;chr3:193853927..193853944,+!p1@HES1!0.71!153.45!HES1;;chr10:8096772..8096787,+!p2@GATA3!0.71!4.94!GATA3;;chr2:239756671..239756732,+!p1@TWIST2!0.70!14.24!TWIST2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.04!TWIST1;;chr17:45928443..45928473,-!p2@SP6!0.70!4.07!SP6;;chr10:135122868..135122893,+!p3@ZNF511!0.70!4.07!ZNF511;;chr12:54447219..54447237,+!p6@HOXC4!0.70!4.07!HOXC4;;chr20:22564895..22564910,-!p1@FOXA2!0.70!4.07!FOXA2;;chr17:70117153..70117174,+!p1@SOX9!0.69!45.92!SOX9;;chr17:38256799..38256815,-!p3@NR1D1!0.69!7.56!NR1D1;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.10!ETV4;;chr12:48298785..48298828,-!p1@VDR!0.68!22.67!VDR;;chr20:55204351..55204377,+!p1@TFAP2C!0.68!4.94!TFAP2C;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.78!HOXC9;;chr2:113994526..113994556,-!p3@PAX8!0.68!3.78!PAX8;;chr16:54320101..54320125,-!p4@IRX3!0.67!5.52!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.67!4.65!HOXC4;;chr13:73636252..73636307,+!p2@KLF5!0.67!4.36!KLF5;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.84!NR1D1;;chr13:41593425..41593480,-!p1@ELF1!0.66!26.45!ELF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.65!3.49!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.65!3.49!HOXC6;;chr6:28048343..28048354,+!p1@ZNF165!0.65!3.49!ZNF165;;chr17:41277372..41277418,-!p1@BRCA1!0.64!13.95!BRCA1;;chr12:80084737..80084763,-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| |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.19!171.18!IRF6;;chr1:209979411..209979433,-!p2@IRF6!1.85!70.33!IRF6;;chr17:7493405..7493419,-!p1@SOX15!1.78!58.71!SOX15;;chr3:189507432..189507459,+!p1@TP63!1.77!57.55!TP63;;chr15:83953397..83953425,-!p1@BNC1!1.71!57.55!BNC1;;chr3:111314186..111314204,-!p1@ZBED2!1.71!50.28!ZBED2;;chr6:10415276..10415341,-!p2@TFAP2A!1.62!49.41!TFAP2A;;chr1:6479968..6479986,-!p1@HES2!1.58!36.91!HES2;;chr17:7492684..7492778,-!p2@SOX15!1.51!64.81!SOX15;;chr13:73633131..73633149,+!p1@KLF5!1.44!274.36!KLF5;;chr5:2751762..2751784,-!p1@IRX2!1.37!22.67!IRX2;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.17!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.34!55.51!OSR1;;chr12:54785074..54785122,-!p2@ZNF385A!1.27!26.74!ZNF385A;;chr2:122042770..122042785,-!p1@TFCP2L1!1.27!17.73!TFCP2L1;;chr11:120107344..120107351,+!p1@POU2F3!1.26!20.93!POU2F3;;chr6:29648890..29648944,-!p1@ZFP57!1.22!15.69!ZFP57;;chr3:111314230..111314241,-!p2@ZBED2!1.22!15.69!ZBED2;;chr12:66218255..66218304,+!p3@HMGA2!1.21!40.40!HMGA2;;chr11:65686802..65686818,+!p6@DRAP1!1.20!25.87!DRAP1;;chr5:3595977..3595999,+!p1@IRX1!1.20!14.82!IRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.95!TFAP2A;;chr8:135725369..135725388,-!p3@ZFAT!1.14!18.02!ZFAT;;chr11:34642612..34642646,+!p1@EHF!1.14!12.79!EHF;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.11!11.92!ZBED1;;chr12:66218598..66218645,+!p2@HMGA2!1.10!54.06!HMGA2;;chr6:10419768..10419819,-!p6@TFAP2A!1.08!11.04!TFAP2A;;chr5:2751785..2751808,-!p2@IRX2!1.06!10.46!IRX2;;chr2:46524897..46524911,+!p2@EPAS1!1.04!27.90!EPAS1;;chr11:65686732..65686756,+!p2@DRAP1!1.03!41.27!DRAP1;;chr12:54785054..54785072,-!p4@ZNF385A!1.03!11.04!ZNF385A;;chr15:101069113..101069169,-!p1@CERS3!1.01!9.30!CERS3;;chr17:8027418..8027432,-!p1@HES7!1.00!9.01!HES7;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!77.31!PPP1R13L;;chr11:47236584..47236679,+!p1@DDB2!0.96!91.26!DDB2;;chr11:65667884..65667895,-!p2@FOSL1!0.96!32.55!FOSL1;;chr5:3595934..3595957,+!p2@IRX1!0.96!8.14!IRX1;;chr9:129376201..129376225,+!p1@LMX1B!0.93!7.56!LMX1B;;chr8:49833948..49833973,-!p2@SNAI2!0.91!46.79!SNAI2;;chr12:48298765..48298783,-!p2@VDR!0.87!13.95!VDR;;chr8:102504651..102504683,+!p1@GRHL2!0.87!6.39!GRHL2;;chr15:83953373..83953386,-!p2@BNC1!0.87!6.39!BNC1;;chr20:22565185..22565223,-!p3@FOXA2!0.87!6.39!FOXA2;;chr11:65667846..65667868,-!p1@FOSL1!0.86!174.09!FOSL1;;chr12:54332608..54332636,+!p1@HOXC13!0.85!6.10!HOXC13;;chr8:128748308..128748324,+!p2@MYC!0.84!174.96!MYC;;chr8:49833978..49833996,-!p1@SNAI2!0.83!128.46!SNAI2;;chr17:41623692..41623715,-!p1@ETV4!0.79!23.83!ETV4;;chr12:66218212..66218244,+!p5@HMGA2!0.79!7.85!HMGA2;;chr4:299227..299272,-!p1@ZNF732!0.79!5.23!ZNF732;;chr13:73636516..73636532,+!p3@KLF5!0.78!5.81!KLF5;;chr5:72744594..72744609,-!p1@FOXD1!0.77!24.41!FOXD1;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.43!FOXD1;;chr6:10412576..10412599,-!p5@TFAP2A!0.77!4.94!TFAP2A;;chr17:45928521..45928539,-!p1@SP6!0.77!4.94!SP6;;chr1:209979375..209979386,-!p4@IRF6!0.77!4.94!IRF6;;chr20:55205825..55205847,+!p2@TFAP2C!0.77!4.94!TFAP2C;;chr11:65687362..65687436,+!p3@DRAP1!0.75!23.25!DRAP1;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.65!HOXC8;;chr1:209979449..209979460,-!p3@IRF6!0.75!4.65!IRF6;;chr18:3447536..3447542,+!p23@TGIF1!0.75!4.65!TGIF1;;chr5:3595961..3595975,+!p3@IRX1!0.75!4.65!IRX1;;chr8:10588010..10588030,-!p1@SOX7!0.75!4.65!SOX7;;chr3:189507460..189507471,+!p3@TP63!0.75!4.65!TP63;;chr4:206390..206444,+!p1@ZNF876P!0.74!8.43!ZNF876P;;chr12:66218836..66218888,+!p1@HMGA2!0.73!45.92!HMGA2;;chr5:1887070..1887114,-!p1@IRX4!0.73!4.36!IRX4;;chr1:158979792..158979814,+!p2@IFI16!0.72!45.34!IFI16;;chr12:66218183..66218209,+!p4@HMGA2!0.72!8.72!HMGA2;;chr3:193853927..193853944,+!p1@HES1!0.71!153.45!HES1;;chr10:8096772..8096787,+!p2@GATA3!0.71!4.94!GATA3;;chr2:239756671..239756732,+!p1@TWIST2!0.70!14.24!TWIST2;;chr7:19157043..19157088,-!p2@TWIST1!0.70!11.04!TWIST1;;chr17:45928443..45928473,-!p2@SP6!0.70!4.07!SP6;;chr10:135122868..135122893,+!p3@ZNF511!0.70!4.07!ZNF511;;chr12:54447219..54447237,+!p6@HOXC4!0.70!4.07!HOXC4;;chr20:22564895..22564910,-!p1@FOXA2!0.70!4.07!FOXA2;;chr17:70117153..70117174,+!p1@SOX9!0.69!45.92!SOX9;;chr17:38256799..38256815,-!p3@NR1D1!0.69!7.56!NR1D1;;chr17:41622925..41622976,-!p3@ETV4!0.69!6.10!ETV4;;chr12:48298785..48298828,-!p1@VDR!0.68!22.67!VDR;;chr20:55204351..55204377,+!p1@TFAP2C!0.68!4.94!TFAP2C;;chr12:54393880..54393962,+!p1@HOXC9!0.68!3.78!HOXC9;;chr2:113994526..113994556,-!p3@PAX8!0.68!3.78!PAX8;;chr16:54320101..54320125,-!p4@IRX3!0.67!5.52!IRX3;;chr12:54447599..54447630,+!p3@HOXC4!0.67!4.65!HOXC4;;chr13:73636252..73636307,+!p2@KLF5!0.67!4.36!KLF5;;chr17:38256822..38256851,-!p1@NR1D1!0.66!32.84!NR1D1;;chr13:41593425..41593480,-!p1@ELF1!0.66!26.45!ELF1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.65!3.49!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.65!3.49!HOXC6;;chr6:28048343..28048354,+!p1@ZNF165!0.65!3.49!ZNF165;;chr17:41277372..41277418,-!p1@BRCA1!0.64!13.95!BRCA1;;chr12:80084737..80084763,-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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005157 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 36: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mammary%2520Epithelial%2520Cell%252c%2520donor2.CNhs11382.11350-117G9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11350-117G9 | |id=FF:11350-117G9 | ||
|is_a=EFO:0002091;;FF:0000088 | |is_a=EFO:0002091;;FF:0000088 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11382 | |||
|library_id_phase_based=2:CNhs11382 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11350 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10013.AGTTCC.11350 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11350 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10013.AGTTCC.11350 | |||
|name=Mammary Epithelial Cell, donor2 | |name=Mammary Epithelial Cell, donor2 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 64: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11382,LSID771,release012,COMPLETED | |profile_hcage=CNhs11382,LSID771,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10013,,, | |profile_srnaseq=SRhi10013,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.0495149489561109,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0.110803081130275,0,0.199005448464995,0,0,-0.153323010348428,0,0,0,0.50642464247824,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.199005448464995,0,-0.18188694596813,0,0,0,0.272283065509648,0,0,0,0,0.0311865194523032,0,0,0,0,0,-0.0270023585066044,0,-0.0969923612426051,0,0,0.0134594539171782,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132409952430997,0,0,0,0.05235625431845,0.0678991190305205,0.0554015405651375,0.110803081130275,0,0,-0.0980353512377064,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.0554015405651375,0,0,0,0,0,0,0.0397679388323632,0,0,0,-0.188652303681418,-0.44213410267202,0,0,0,0,0,0 | |||
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| |||
|rna_box=117 | |rna_box=117 | ||
|rna_catalog_number=CA830-R10a | |rna_catalog_number=CA830-R10a | ||
| Line 58: | Line 81: | ||
|rna_tube_id=117G9 | |rna_tube_id=117G9 | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|rnaseq_library_id=SRhi10013.AGTTCC | |||
|sample_age=28 | |sample_age=28 | ||
|sample_category=primary cells | |||
|sample_cell_catalog=N/A | |sample_cell_catalog=N/A | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 80: | Line 105: | ||
|top_motifs=TP53:2.66242299691;TBX4,5:2.0235799271;VSX1,2:1.57039118423;ZEB1:1.53203121679;PPARG:1.35656265651;SNAI1..3:1.31241591214;POU1F1:1.29883764511;TEF:1.20445382798;FOXQ1:1.18607672484;FOX{I1,J2}:1.11238362964;NR3C1:1.0455301783;CDC5L:0.944877474062;PDX1:0.933441986302;NKX2-3_NKX2-5:0.918985900522;ONECUT1,2:0.918757549734;HOX{A4,D4}:0.905109301005;NKX2-2,8:0.763815744519;bHLH_family:0.73842118285;TEAD1:0.718836920951;ADNP_IRX_SIX_ZHX:0.713442853219;NKX3-2:0.712083667636;STAT5{A,B}:0.701415918627;E2F1..5:0.664452874373;FOXM1:0.6565504724;GFI1:0.570673472899;MYB:0.568765290212;NKX2-1,4:0.558460755395;HOX{A5,B5}:0.55394205832;FOS_FOS{B,L1}_JUN{B,D}:0.52440553891;TFDP1:0.523611644636;BACH2:0.469779658016;TBP:0.468172137329;EN1,2:0.429160586931;XCPE1{core}:0.426835931291;NFIL3:0.414793159298;NR5A1,2:0.413488260679;NFIX:0.407857470887;NR1H4:0.393963554862;UFEwm:0.389819543845;ELK1,4_GABP{A,B1}:0.388335458762;PAX8:0.360869747197;KLF4:0.360556345307;POU2F1..3:0.338161455799;NANOG:0.317264917404;ZNF148:0.312787042918;FOSL2:0.27866799917;ELF1,2,4:0.274350181848;MYOD1:0.268413195989;T:0.266712305569;NRF1:0.252629810355;PAX1,9:0.241797917957;ZNF143:0.239344408351;SP1:0.222852984232;SOX17:0.219076541836;CEBPA,B_DDIT3:0.205842603451;NFY{A,B,C}:0.202662877625;OCT4_SOX2{dimer}:0.153225566559;HIF1A:0.142106472152;CREB1:0.135389936045;LMO2:0.113389475131;EVI1:0.112457087013;POU6F1:0.109091652996;ARID5B:0.0681298842513;LHX3,4:0.0613737498055;ZBTB6:0.0478782432477;AR:0.0475838226951;HES1:0.0331999322323;EP300:0.0274608067735;HMGA1,2:0.0214952084976;GZF1:0.0202720249877;ZIC1..3:0.0100969900469;RBPJ:-0.0100998657616;MYBL2:-0.013633113498;SMAD1..7,9:-0.0137989360105;HLF:-0.0204141960369;FOXO1,3,4:-0.0250469462102;CRX:-0.0265892232955;HAND1,2:-0.0351883411336;NFE2:-0.0357073464208;MTF1:-0.0386317929278;HSF1,2:-0.0735744097512;YY1:-0.0861325129472;HNF1A:-0.0876503782414;LEF1_TCF7_TCF7L1,2:-0.0906084526263;GLI1..3:-0.104008711476;PAX2:-0.122267788513;ZNF238:-0.129610567678;GFI1B:-0.14237135047;ATF4:-0.142964417468;POU5F1:-0.147437679653;PAX5:-0.161958542796;FOXN1:-0.16524111111;MAZ:-0.174832182651;IKZF1:-0.175374747254;ATF5_CREB3:-0.176117810316;PAX4:-0.184291997065;TLX1..3_NFIC{dimer}:-0.184468099289;AHR_ARNT_ARNT2:-0.184616160511;HNF4A_NR2F1,2:-0.200672671897;TOPORS:-0.211327251557;FOXL1:-0.219989399622;SPI1:-0.228132239519;ZBTB16:-0.229368182758;REST:-0.230864803817;FOX{F1,F2,J1}:-0.232742969715;AIRE:-0.236608260967;MTE{core}:-0.237792338647;TFCP2:-0.240372134354;RXR{A,B,G}:-0.2421744772;FOXA2:-0.244154088636;NFKB1_REL_RELA:-0.250270650448;PBX1:-0.261191541583;DBP:-0.264844637297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.269451978501;GATA4:-0.273759913228;ALX4:-0.286711770994;IRF7:-0.288128232753;NR6A1:-0.289861037261;TLX2:-0.297266507585;POU3F1..4:-0.307463689296;TFAP2{A,C}:-0.307490872251;CUX2:-0.310085719163;RFX2..5_RFXANK_RFXAP:-0.327305412597;GATA6:-0.328873802223;ETS1,2:-0.346635672502;NKX3-1:-0.35432757376;ZNF423:-0.359359682882;ALX1:-0.359478405224;GCM1,2:-0.375831833299;NHLH1,2:-0.376635888253;RFX1:-0.379442619691;SPIB:-0.379625717053;PAX6:-0.387037415633;GTF2A1,2:-0.389401704947;SOX2:-0.403794735895;NFATC1..3:-0.412085497099;TFAP4:-0.428356391358;ATF2:-0.430285093931;FOXD3:-0.435295514571;EBF1:-0.444276941397;GTF2I:-0.444468193784;EGR1..3:-0.449100791722;IKZF2:-0.455273617498;JUN:-0.455765054371;MED-1{core}:-0.470168588105;RUNX1..3:-0.479553106156;FOXP3:-0.481219124943;PRDM1:-0.483366277903;ESR1:-0.485794142058;SRF:-0.496306747195;NFE2L2:-0.515572211358;BREu{core}:-0.526693747629;SOX{8,9,10}:-0.534045852211;ZNF384:-0.535348128461;PRRX1,2:-0.550725232061;MYFfamily:-0.553688349763;HIC1:-0.554294787209;ZFP161:-0.566443261969;ESRRA:-0.595520433558;BPTF:-0.600850937465;STAT2,4,6:-0.614814823743;DMAP1_NCOR{1,2}_SMARC:-0.615265125426;HOX{A6,A7,B6,B7}:-0.61832966526;CDX1,2,4:-0.645400445868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.680337780616;MEF2{A,B,C,D}:-0.716123147577;PITX1..3:-0.730008292505;FOXP1:-0.742855760698;SPZ1:-0.770163558304;RXRA_VDR{dimer}:-0.788220460885;RREB1:-0.792967916556;TGIF1:-0.836664285343;STAT1,3:-0.840719861333;FOX{D1,D2}:-0.849577893788;MAFB:-0.851482654505;NFE2L1:-0.867017321317;TFAP2B:-0.869280130875;PAX3,7:-0.870842164644;NKX6-1,2:-0.87531387398;IRF1,2:-0.876951364267;HOXA9_MEIS1:-0.966233936492;RORA:-0.986901077283;HMX1:-1.03769330659;ATF6:-1.10991258099;SREBF1,2:-1.1130897817;TAL1_TCF{3,4,12}:-1.11706781707;SOX5:-1.11951888996;PATZ1:-1.14479271182;NANOG{mouse}:-1.21392456561;MZF1:-1.22102058319;HBP1_HMGB_SSRP1_UBTF:-1.28303711454;XBP1:-1.52606127711 | |top_motifs=TP53:2.66242299691;TBX4,5:2.0235799271;VSX1,2:1.57039118423;ZEB1:1.53203121679;PPARG:1.35656265651;SNAI1..3:1.31241591214;POU1F1:1.29883764511;TEF:1.20445382798;FOXQ1:1.18607672484;FOX{I1,J2}:1.11238362964;NR3C1:1.0455301783;CDC5L:0.944877474062;PDX1:0.933441986302;NKX2-3_NKX2-5:0.918985900522;ONECUT1,2:0.918757549734;HOX{A4,D4}:0.905109301005;NKX2-2,8:0.763815744519;bHLH_family:0.73842118285;TEAD1:0.718836920951;ADNP_IRX_SIX_ZHX:0.713442853219;NKX3-2:0.712083667636;STAT5{A,B}:0.701415918627;E2F1..5:0.664452874373;FOXM1:0.6565504724;GFI1:0.570673472899;MYB:0.568765290212;NKX2-1,4:0.558460755395;HOX{A5,B5}:0.55394205832;FOS_FOS{B,L1}_JUN{B,D}:0.52440553891;TFDP1:0.523611644636;BACH2:0.469779658016;TBP:0.468172137329;EN1,2:0.429160586931;XCPE1{core}:0.426835931291;NFIL3:0.414793159298;NR5A1,2:0.413488260679;NFIX:0.407857470887;NR1H4:0.393963554862;UFEwm:0.389819543845;ELK1,4_GABP{A,B1}:0.388335458762;PAX8:0.360869747197;KLF4:0.360556345307;POU2F1..3:0.338161455799;NANOG:0.317264917404;ZNF148:0.312787042918;FOSL2:0.27866799917;ELF1,2,4:0.274350181848;MYOD1:0.268413195989;T:0.266712305569;NRF1:0.252629810355;PAX1,9:0.241797917957;ZNF143:0.239344408351;SP1:0.222852984232;SOX17:0.219076541836;CEBPA,B_DDIT3:0.205842603451;NFY{A,B,C}:0.202662877625;OCT4_SOX2{dimer}:0.153225566559;HIF1A:0.142106472152;CREB1:0.135389936045;LMO2:0.113389475131;EVI1:0.112457087013;POU6F1:0.109091652996;ARID5B:0.0681298842513;LHX3,4:0.0613737498055;ZBTB6:0.0478782432477;AR:0.0475838226951;HES1:0.0331999322323;EP300:0.0274608067735;HMGA1,2:0.0214952084976;GZF1:0.0202720249877;ZIC1..3:0.0100969900469;RBPJ:-0.0100998657616;MYBL2:-0.013633113498;SMAD1..7,9:-0.0137989360105;HLF:-0.0204141960369;FOXO1,3,4:-0.0250469462102;CRX:-0.0265892232955;HAND1,2:-0.0351883411336;NFE2:-0.0357073464208;MTF1:-0.0386317929278;HSF1,2:-0.0735744097512;YY1:-0.0861325129472;HNF1A:-0.0876503782414;LEF1_TCF7_TCF7L1,2:-0.0906084526263;GLI1..3:-0.104008711476;PAX2:-0.122267788513;ZNF238:-0.129610567678;GFI1B:-0.14237135047;ATF4:-0.142964417468;POU5F1:-0.147437679653;PAX5:-0.161958542796;FOXN1:-0.16524111111;MAZ:-0.174832182651;IKZF1:-0.175374747254;ATF5_CREB3:-0.176117810316;PAX4:-0.184291997065;TLX1..3_NFIC{dimer}:-0.184468099289;AHR_ARNT_ARNT2:-0.184616160511;HNF4A_NR2F1,2:-0.200672671897;TOPORS:-0.211327251557;FOXL1:-0.219989399622;SPI1:-0.228132239519;ZBTB16:-0.229368182758;REST:-0.230864803817;FOX{F1,F2,J1}:-0.232742969715;AIRE:-0.236608260967;MTE{core}:-0.237792338647;TFCP2:-0.240372134354;RXR{A,B,G}:-0.2421744772;FOXA2:-0.244154088636;NFKB1_REL_RELA:-0.250270650448;PBX1:-0.261191541583;DBP:-0.264844637297;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.269451978501;GATA4:-0.273759913228;ALX4:-0.286711770994;IRF7:-0.288128232753;NR6A1:-0.289861037261;TLX2:-0.297266507585;POU3F1..4:-0.307463689296;TFAP2{A,C}:-0.307490872251;CUX2:-0.310085719163;RFX2..5_RFXANK_RFXAP:-0.327305412597;GATA6:-0.328873802223;ETS1,2:-0.346635672502;NKX3-1:-0.35432757376;ZNF423:-0.359359682882;ALX1:-0.359478405224;GCM1,2:-0.375831833299;NHLH1,2:-0.376635888253;RFX1:-0.379442619691;SPIB:-0.379625717053;PAX6:-0.387037415633;GTF2A1,2:-0.389401704947;SOX2:-0.403794735895;NFATC1..3:-0.412085497099;TFAP4:-0.428356391358;ATF2:-0.430285093931;FOXD3:-0.435295514571;EBF1:-0.444276941397;GTF2I:-0.444468193784;EGR1..3:-0.449100791722;IKZF2:-0.455273617498;JUN:-0.455765054371;MED-1{core}:-0.470168588105;RUNX1..3:-0.479553106156;FOXP3:-0.481219124943;PRDM1:-0.483366277903;ESR1:-0.485794142058;SRF:-0.496306747195;NFE2L2:-0.515572211358;BREu{core}:-0.526693747629;SOX{8,9,10}:-0.534045852211;ZNF384:-0.535348128461;PRRX1,2:-0.550725232061;MYFfamily:-0.553688349763;HIC1:-0.554294787209;ZFP161:-0.566443261969;ESRRA:-0.595520433558;BPTF:-0.600850937465;STAT2,4,6:-0.614814823743;DMAP1_NCOR{1,2}_SMARC:-0.615265125426;HOX{A6,A7,B6,B7}:-0.61832966526;CDX1,2,4:-0.645400445868;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.680337780616;MEF2{A,B,C,D}:-0.716123147577;PITX1..3:-0.730008292505;FOXP1:-0.742855760698;SPZ1:-0.770163558304;RXRA_VDR{dimer}:-0.788220460885;RREB1:-0.792967916556;TGIF1:-0.836664285343;STAT1,3:-0.840719861333;FOX{D1,D2}:-0.849577893788;MAFB:-0.851482654505;NFE2L1:-0.867017321317;TFAP2B:-0.869280130875;PAX3,7:-0.870842164644;NKX6-1,2:-0.87531387398;IRF1,2:-0.876951364267;HOXA9_MEIS1:-0.966233936492;RORA:-0.986901077283;HMX1:-1.03769330659;ATF6:-1.10991258099;SREBF1,2:-1.1130897817;TAL1_TCF{3,4,12}:-1.11706781707;SOX5:-1.11951888996;PATZ1:-1.14479271182;NANOG{mouse}:-1.21392456561;MZF1:-1.22102058319;HBP1_HMGB_SSRP1_UBTF:-1.28303711454;XBP1:-1.52606127711 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11350-117G9;search_select_hide=table117:FF:11350-117G9 | |||
}} | }} | ||
Latest revision as of 17:54, 4 June 2020
| Name: | Mammary Epithelial Cell, donor2 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11382 |
| Sample type: | primary cells |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11382
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11382
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.455 |
| 10 | 10 | 0.884 |
| 100 | 100 | 0.591 |
| 101 | 101 | 0.195 |
| 102 | 102 | 0.194 |
| 103 | 103 | 0.0699 |
| 104 | 104 | 0.868 |
| 105 | 105 | 0.709 |
| 106 | 106 | 0.547 |
| 107 | 107 | 0.245 |
| 108 | 108 | 0.722 |
| 109 | 109 | 2.78611e-4 |
| 11 | 11 | 0.73 |
| 110 | 110 | 0.23 |
| 111 | 111 | 0.0359 |
| 112 | 112 | 0.834 |
| 113 | 113 | 0.0281 |
| 114 | 114 | 0.545 |
| 115 | 115 | 0.846 |
| 116 | 116 | 0.352 |
| 117 | 117 | 0.927 |
| 118 | 118 | 0.555 |
| 119 | 119 | 0.476 |
| 12 | 12 | 0.703 |
| 120 | 120 | 0.0182 |
| 121 | 121 | 0.972 |
| 122 | 122 | 0.223 |
| 123 | 123 | 0.345 |
| 124 | 124 | 0.056 |
| 125 | 125 | 0.429 |
| 126 | 126 | 0.403 |
| 127 | 127 | 0.059 |
| 128 | 128 | 0.285 |
| 129 | 129 | 0.14 |
| 13 | 13 | 0.0406 |
| 130 | 130 | 0.89 |
| 131 | 131 | 0.272 |
| 132 | 132 | 0.162 |
| 133 | 133 | 0.0171 |
| 134 | 134 | 0.236 |
| 135 | 135 | 0.756 |
| 136 | 136 | 0.0163 |
| 137 | 137 | 0.264 |
| 138 | 138 | 0.204 |
| 139 | 139 | 0.0775 |
| 14 | 14 | 0.608 |
| 140 | 140 | 0.822 |
| 141 | 141 | 0.225 |
| 142 | 142 | 0.507 |
| 143 | 143 | 0.512 |
| 144 | 144 | 0.0424 |
| 145 | 145 | 0.999 |
| 146 | 146 | 0.305 |
| 147 | 147 | 0.222 |
| 148 | 148 | 0.409 |
| 149 | 149 | 0.243 |
| 15 | 15 | 0.915 |
| 150 | 150 | 0.453 |
| 151 | 151 | 0.455 |
| 152 | 152 | 0.137 |
| 153 | 153 | 0.738 |
| 154 | 154 | 0.73 |
| 155 | 155 | 0.82 |
| 156 | 156 | 0.586 |
| 157 | 157 | 0.531 |
| 158 | 158 | 0.0439 |
| 159 | 159 | 0.519 |
| 16 | 16 | 0.00388 |
| 160 | 160 | 0.472 |
| 161 | 161 | 0.874 |
| 162 | 162 | 0.501 |
| 163 | 163 | 0.221 |
| 164 | 164 | 0.492 |
| 165 | 165 | 0.114 |
| 166 | 166 | 0.0678 |
| 167 | 167 | 0.81 |
| 168 | 168 | 0.284 |
| 169 | 169 | 0.0933 |
| 17 | 17 | 0.521 |
| 18 | 18 | 0.321 |
| 19 | 19 | 0.744 |
| 2 | 2 | 0.447 |
| 20 | 20 | 0.714 |
| 21 | 21 | 0.805 |
| 22 | 22 | 0.839 |
| 23 | 23 | 0.897 |
| 24 | 24 | 0.0031 |
| 25 | 25 | 0.501 |
| 26 | 26 | 0.956 |
| 27 | 27 | 0.747 |
| 28 | 28 | 0.312 |
| 29 | 29 | 0.228 |
| 3 | 3 | 0.951 |
| 30 | 30 | 0.0534 |
| 31 | 31 | 0.94 |
| 32 | 32 | 0.17 |
| 33 | 33 | 0.0618 |
| 34 | 34 | 0.181 |
| 35 | 35 | 0.0569 |
| 36 | 36 | 0.563 |
| 37 | 37 | 0.482 |
| 38 | 38 | 0.401 |
| 39 | 39 | 0.495 |
| 4 | 4 | 0.888 |
| 40 | 40 | 0.244 |
| 41 | 41 | 0.582 |
| 42 | 42 | 0.61 |
| 43 | 43 | 0.67 |
| 44 | 44 | 0.464 |
| 45 | 45 | 0.587 |
| 46 | 46 | 0.995 |
| 47 | 47 | 0.376 |
| 48 | 48 | 0.09 |
| 49 | 49 | 0.366 |
| 5 | 5 | 0.614 |
| 50 | 50 | 0.301 |
| 51 | 51 | 1 |
| 52 | 52 | 0.887 |
| 53 | 53 | 0.189 |
| 54 | 54 | 0.928 |
| 55 | 55 | 0.567 |
| 56 | 56 | 0.498 |
| 57 | 57 | 0.375 |
| 58 | 58 | 0.876 |
| 59 | 59 | 0.86 |
| 6 | 6 | 0.75 |
| 60 | 60 | 0.457 |
| 61 | 61 | 0.414 |
| 62 | 62 | 0.517 |
| 63 | 63 | 0.194 |
| 64 | 64 | 0.971 |
| 65 | 65 | 0.976 |
| 66 | 66 | 0.0811 |
| 67 | 67 | 0.938 |
| 68 | 68 | 0.314 |
| 69 | 69 | 0.375 |
| 7 | 7 | 0.451 |
| 70 | 70 | 0.677 |
| 71 | 71 | 0.149 |
| 72 | 72 | 0.976 |
| 73 | 73 | 0.00836 |
| 74 | 74 | 0.552 |
| 75 | 75 | 0.133 |
| 76 | 76 | 0.834 |
| 77 | 77 | 0.619 |
| 78 | 78 | 0.146 |
| 79 | 79 | 0.0977 |
| 8 | 8 | 0.655 |
| 80 | 80 | 0.878 |
| 81 | 81 | 0.857 |
| 82 | 82 | 0.503 |
| 83 | 83 | 0.442 |
| 84 | 84 | 0.0802 |
| 85 | 85 | 0.137 |
| 86 | 86 | 0.331 |
| 87 | 87 | 0.00462 |
| 88 | 88 | 0.867 |
| 89 | 89 | 0.0196 |
| 9 | 9 | 0.264 |
| 90 | 90 | 0.685 |
| 91 | 91 | 0.933 |
| 92 | 92 | 0.356 |
| 93 | 93 | 0.596 |
| 94 | 94 | 0.492 |
| 95 | 95 | 0.00395 |
| 96 | 96 | 0.736 |
| 97 | 97 | 0.455 |
| 98 | 98 | 0.736 |
| 99 | 99 | 0.0405 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11382
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0002327 (mammary gland epithelial cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001911 (mammary gland)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002365 (exocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0002330 (exocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000088 (human mammary epithelial cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
