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{{f5samples
 
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000042,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000483,UBERON:0000486,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0000982,UBERON:0001062,UBERON:0001434,UBERON:0002018,UBERON:0002050,UBERON:0002204,UBERON:0002217,UBERON:0002384,UBERON:0002532,UBERON:0004120,UBERON:0004457,UBERON:0004458,UBERON:0004765,UBERON:0004770,UBERON:0004905,UBERON:0004923,UBERON:0005423,UBERON:0006914,UBERON:0006915,UBERON:0007616
+
|DRA_sample_Accession=CAGE@SAMD00005012
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000048,CL:0000063,CL:0000066,CL:0000134,CL:0000144,CL:0000151,CL:0000153,CL:0000213,CL:0000214,CL:0000215,CL:0000219,CL:0000220,CL:0000222,CL:0000255,CL:0000327,CL:0000447,CL:0000499,CL:0000548,CL:0000723,CL:0002078,CL:0002320,CL:0002321,CL:0002371
+
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005012
 +
|accession_numbers=CAGE;DRX008517;DRR009389;DRZ000814;DRZ002199;DRZ012164;DRZ013549
 +
|accession_numbers_RNASeq=sRNA-Seq;DRX037054;DRR041420;DRZ007062
 +
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000483,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004120,UBERON:0004457,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0006914,UBERON:0004905,UBERON:0000486,UBERON:0006915,UBERON:0007616,UBERON:0000042,UBERON:0000982,UBERON:0004458,UBERON:0010317,UBERON:0002217,UBERON:0002018,UBERON:0002204,UBERON:0001434,UBERON:0004770
 +
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0000066,CL:0002371,CL:0000213,CL:0002078,CL:0000499,CL:0000153,CL:0000327,CL:0000447,CL:0000215,CL:0000255,CL:0000214
 
|ancestors_in_disease_facet=
 
|ancestors_in_disease_facet=
 +
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000187
 
|comment=
 
|comment=
 
|created_by=
 
|created_by=
 
|creation_date=
 
|creation_date=
 +
|data_phase=2
 +
|datafreeze_phase=2
 
|def=
 
|def=
 +
|expression_enrichment_score=chr9:132427883..132427951,+!p2@PRRX2!1.83!66.71!PRRX2;;chr9:132427972..132428056,+!p1@PRRX2!1.79!78.32!PRRX2;;chr1:170632285..170632309,+!p1@PRRX1!1.78!66.71!PRRX1;;chr7:19157248..19157268,-!p1@TWIST1!1.68!126.45!TWIST1;;chr10:28034739..28034756,-!p1@MKX!1.66!45.18!MKX;;chr14:61116183..61116208,-!p1@SIX1!1.63!150.94!SIX1;;chr12:52445218..52445237,+!p1@NR4A1!1.59!456.41!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.57!100.07!EGR3;;chr19:13134772..13134822,+!p2@NFIX!1.44!38.21!NFIX;;chr17:48072574..48072597,-!p1@DLX3!1.42!25.33!DLX3;;chr2:239756671..239756732,+!p1@TWIST2!1.41!77.48!TWIST2;;chr5:137804484..137804498,+!p2@EGR1!1.37!87.19!EGR1;;chr2:45236540..45236577,-!p1@SIX2!1.37!22.59!SIX2;;chr10:131762504..131762555,-!p1@EBF3!1.36!21.74!EBF3;;chr5:158526917..158526932,-!p1@EBF1!1.35!52.99!EBF1;;chr14:75746722..75746777,+!p2@FOS!1.35!27.23!FOS;;chr12:54380404..54380433,+!p3@HOXC10!1.26!17.31!HOXC10;;chr21:39821025..39821046,-!p9@ERG!1.25!16.89!ERG;;chr14:75745523..75745537,+!p1@FOS!1.24!1921.08!FOS;;chr6:1610293..1610310,+!p1@FOXC1!1.23!26.81!FOXC1;;chr5:134369879..134369898,-!p2@PITX1!1.23!15.83!PITX1;;chr12:53614115..53614154,-!p1@RARG!1.22!82.54!RARG;;chr7:19157043..19157088,-!p2@TWIST1!1.22!39.27!TWIST1;;chr1:170632959..170632987,+!p4@PRRX1!1.22!17.10!PRRX1;;chr6:85474299..85474324,-!p1@TBX18!1.21!27.02!TBX18;;chr2:239756739..239756755,+!p2@TWIST2!1.19!24.49!TWIST2;;chr16:79634624..79634642,-!p1@MAF!1.18!55.31!MAF;;chr1:170632477..170632506,+!p6@PRRX1!1.17!13.72!PRRX1;;chr6:1312325..1312340,+!p1@FOXQ1!1.13!20.27!FOXQ1;;chr11:46299199..46299233,+!p1@CREB3L1!1.12!62.91!CREB3L1;;chr10:131762410..131762436,-!p2@EBF3!1.12!12.24!EBF3;;chr5:134369905..134369972,-!p1@PITX1!1.11!18.37!PITX1;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.10!11.61!SEBOX;;chr4:26323870..26323885,+!p13@RBPJ!1.10!11.61!RBPJ;;chr1:170633058..170633084,+!p5@PRRX1!1.10!11.61!PRRX1;;chr10:119303078..119303169,+!p2@EMX2!1.09!11.19!EMX2;;chr4:26323764..26323821,+!p15@RBPJ!1.08!10.98!RBPJ;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.07!10.77!HOXC5;;chr7:27213893..27213954,-!p1@HOXA10!1.06!10.56!HOXA10;;chr17:7492684..7492778,-!p2@SOX15!1.05!21.96!SOX15;;chr16:79633894..79633954,-!p3@MAF!1.05!19.84!MAF;;chr14:24837368..24837401,+!p1@NFATC4!1.04!23.64!NFATC4;;chr1:170633348..170633399,+!p2@PRRX1!1.04!13.51!PRRX1;;chr8:99956662..99956684,+!p1@OSR2!1.03!15.20!OSR2;;chr16:79634595..79634620,-!p2@MAF!1.02!17.31!MAF;;chr18:22932004..22932021,-!p2@ZNF521!1.02!9.50!ZNF521;;chr3:25470156..25470227,+!p2@RARB!1.02!9.50!RARB;;chr2:176994408..176994492,+!p1@HOXD8!1.01!9.29!HOXD8;;chr19:45971246..45971265,+!p1@FOSB!1.00!171.00!FOSB;;chr15:66994663..66994680,+!p1@SMAD6!1.00!21.74!SMAD6;;chr5:137801160..137801176,+!p1@EGR1!0.99!896.57!EGR1;;chr12:54378923..54378966,+!p1@HOXC10!0.98!8.66!HOXC10;;chr19:50432453..50432468,+!p1@ATF5!0.97!482.17!ATF5;;chr7:27192185..27192209,-!p1@HOXA3!0.97!8.23!HOXA3;;chr1:23885981..23886002,-!p1@ID3!0.96!1457.28!ID3;;chr7:44143925..44143970,+!p1@AEBP1!0.96!184.93!AEBP1;;chr22:38598086..38598105,+!p1@MAFF!0.96!90.14!MAFF;;chr1:170633262..170633285,+!p3@PRRX1!0.96!9.29!PRRX1;;chr1:170632250..170632277,+!p7@PRRX1!0.96!8.02!PRRX1;;chr10:63853436..63853442,+!p4@ARID5B!0.95!43.91!ARID5B;;chr10:64576105..64576133,-!p1@EGR2!0.95!16.68!EGR2;;chr8:72756667..72756736,-!p2@MSC!0.95!12.67!MSC;;chr8:72756637..72756664,-!p3@MSC!0.95!9.08!MSC;;chr5:158527104..158527135,-!p4@EBF1!0.95!7.81!EBF1;;chr2:176973498..176973524,+!p1@HOXD10!0.95!7.81!HOXD10;;chr14:61116168..61116180,-!p2@SIX1!0.94!8.87!SIX1;;chr4:26322267..26322334,+!p3@RBPJ!0.93!18.58!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.93!11.19!MSC;;chr20:51588873..51588953,+!p1@TSHZ2!0.93!10.13!TSHZ2;;chr7:15725757..15725828,-!p5@MEOX2!0.92!7.39!MEOX2;;chr2:8822176..8822196,+!p1@ID2!0.91!1034.85!ID2;;chr2:191878874..191878938,-!p1@STAT1!0.90!388.86!STAT1;;chr6:144329384..144329405,-!p1@PLAGL1!0.90!84.87!PLAGL1;;chr7:27196267..27196311,-!p1@HOXA7!0.90!6.97!HOXA7;;chr6:126240442..126240459,+!p4@NCOA7!0.89!8.87!NCOA7;;chr10:63809106..63809127,+!p1@ARID5B!0.88!93.52!ARID5B;;chr12:53625966..53626012,-!p2@RARG!0.88!18.16!RARG;;chr15:66994561..66994597,+!p2@SMAD6!0.88!16.26!SMAD6;;chr7:44143997..44144008,+!p3@AEBP1!0.88!8.44!AEBP1;;chr3:157823517..157823562,-!p1@SHOX2!0.88!7.18!SHOX2;;chr10:28035112..28035130,-!p5@MKX!0.88!6.54!MKX;;chr12:52448420..52448460,+!p5@NR4A1!0.88!6.54!NR4A1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.88!6.54!HOXC5;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.87!67.13!GLIS2;;chr7:44143978..44143989,+!p2@AEBP1!0.87!12.24!AEBP1;;chr19:50435736..50435781,+!p3@ATF5!0.87!9.08!ATF5;;chr1:170632723..170632739,+!p8@PRRX1!0.87!6.33!PRRX1;;chr19:13106214..13106382,+!p1@NFIX!0.86!153.26!NFIX;;chr9:102584262..102584276,+!p1@NR4A3!0.86!14.57!NR4A3;;chr10:63809013..63809041,+!p3@ARID5B!0.85!35.68!ARID5B;;chr1:119530706..119530736,-!p3@TBX15!0.85!6.12!TBX15;;chr9:110252035..110252057,-!p1@KLF4!0.84!101.75!KLF4;;chr9:102584159..102584174,+!p2@NR4A3!0.84!11.19!NR4A3;;chr10:28032421..28032494,-!p2@MKX!0.84!5.91!MKX;;chr10:28035133..28035148,-!p3@MKX!0.84!5.91!MKX;;chr11:46299539..46299620,+!p2@CREB3L1!0.83!10.13!CREB3L1;;chr8:72756213..72756243,-!p5@MSC!0.83!7.60!MSC;;chr19:45260775..45260838,+!p5@BCL3!0.83!7.60!BCL3;;chr2:85980919..85980942,+!p4@ATOH8!0.83!6.12!ATOH8;;chr12:54393880..54393962,+!p1@HOXC9!0.83!5.70!HOXC9;;chr8:72756063..72756125,-!p1@MSC!0.82!11.82!MSC;;chr15:66994615..66994630,+!p3@SMAD6!0.82!8.23!SMAD6;;chr7:28448965..28448994,+!p2@CREB5!0.81!20.69!CREB5;;chr17:38498594..38498661,+!p2@RARA!0.81!19.42!RARA;;chr1:170632137..170632172,+!p10@PRRX1!0.81!5.49!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.81!5.49!PRRX1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.49!ZFY;;chr19:12902289..12902307,+!p1@JUNB!0.80!1319.21!JUNB;;chr10:77161504..77161530,-!p1@ZNF503!0.80!76.63!ZNF503;;chr11:65687362..65687436,+!p3@DRAP1!0.80!25.97!DRAP1;;chr18:22932080..22932170,-!p1@ZNF521!0.80!24.28!ZNF521;;chr11:65667884..65667895,-!p2@FOSL1!0.80!22.38!FOSL1;;chr10:63809077..63809089,+!p5@ARID5B!0.80!12.24!ARID5B;;chrY:21906594..21906622,-!p1@KDM5D!0.80!5.28!KDM5D;;chr6:1389789..1389821,+!p1@FOXF2!0.79!7.39!FOXF2;;chr8:48650715..48650735,-!p1@CEBPD!0.78!695.18!CEBPD;;chr19:16435625..16435682,+!p1@KLF2!0.78!178.60!KLF2;;chr6:19837592..19837621,+!p1@ID4!0.78!33.14!ID4;;chr15:83953397..83953425,-!p1@BNC1!0.78!5.91!BNC1;;chr14:75746781..75746799,+!p6@FOS!0.78!5.07!FOS;;chr14:75747296..75747329,+!p4@FOS!0.78!5.07!FOS;;chr19:16435705..16435726,+!p3@KLF2!0.78!5.07!KLF2;;chr7:15726296..15726315,-!p1@MEOX2!0.78!5.07!MEOX2;;chr21:38071430..38071456,+!p1@SIM2!0.78!5.07!SIM2;;chr1:59249688..59249703,-!p3@JUN!0.77!31.88!JUN;;chr1:23696308..23696339,-!p2@ZNF436!0.77!10.98!ZNF436;;chr7:28448995..28449011,+!p4@CREB5!0.77!7.18!CREB5;;chr1:170632115..170632136,+!p9@PRRX1!0.77!4.86!PRRX1;;chr21:40032884..40032915,-!p2@ERG!0.77!4.86!ERG;;chr12:54772960..54773015,-!p3@ZNF385A!0.76!25.33!ZNF385A;;chr14:75894714..75894733,+!p1@JDP2!0.75!146.72!JDP2;;chr10:31610110..31610159,+!p2@ZEB1!0.75!4.64!ZEB1;;chr2:45236579..45236596,-!p2@SIX2!0.75!4.64!SIX2;;chr7:27205106..27205134,-!p2@HOXA9!0.75!4.64!HOXA9;;chr3:193853927..193853944,+!p1@HES1!0.74!162.76!HES1;;chr16:54320617..54320643,-!p3@IRX3!0.74!5.91!IRX3;;chr1:170632762..170632786,+!p13@PRRX1!0.74!4.43!PRRX1;;chr9:14314476..14314487,-!p9@NFIB!0.74!4.43!NFIB;;chr6:126240380..126240430,+!p2@NCOA7!0.73!12.46!NCOA7;;chr15:57511609..57511651,+!p2@TCF12!0.73!7.81!TCF12;;chr9:73028814..73028895,-!p1@KLF9!0.72!47.08!KLF9;;chr19:45504688..45504782,+!p1@RELB!0.72!28.50!RELB;;chr9:14083467..14083483,-!p4@NFIB!0.72!11.40!NFIB;;chr2:85981222..85981259,+!p2@ATOH8!0.72!7.39!ATOH8;;chr9:102584241..102584261,+!p4@NR4A3!0.72!6.97!NR4A3;;chr10:63851669..63851682,+!p10@ARID5B!0.72!4.64!ARID5B;;chr10:114886551..114886601,+!p11@TCF7L2!0.72!4.22!TCF7L2;;chr13:37494275..37494304,-!p2@SMAD9!0.72!4.22!SMAD9;;chr2:85981107..85981120,+!p3@ATOH8!0.72!4.22!ATOH8;;chr1:44513995..44514031,+!p1@KLF17!0.72!4.22!KLF17;;chr15:66994885..66994904,+!p7@SMAD6!0.72!4.22!SMAD6;;chr11:65686732..65686756,+!p2@DRAP1!0.71!19.63!DRAP1;;chr5:321810..321877,+!p1@AHRR!0.71!14.36!AHRR;;chr9:110251836..110251887,-!p4@KLF4!0.71!5.70!KLF4;;chr5:137800878..137800898,+!p6@EGR1!0.71!5.07!EGR1;;chr20:30193083..30193098,+!p1@ID1!0.70!372.39!ID1;;chr8:49833978..49833996,-!p1@SNAI2!0.70!93.10!SNAI2;;chr8:49833948..49833973,-!p2@SNAI2!0.70!29.13!SNAI2;;chr9:110250697..110250738,-!p2@KLF4!0.70!4.86!KLF4;;chr7:27205136..27205164,-!p1@HOXA9!0.70!4.01!HOXA9;;chr8:72756380..72756427,-!p8@MSC!0.70!4.01!MSC;;chr2:178128149..178128198,-!p2@NFE2L2!0.69!23.64!NFE2L2;;chr2:28618532..28618610,+!p4@FOSL2!0.69!7.18!FOSL2;;chr1:158969752..158969780,+!p6@IFI16!0.69!7.18!IFI16;;chr12:52448213..52448262,+!p6@NR4A1!0.68!3.80!NR4A1;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!0.68!3.80!SEBOX;;chr17:15689487..15689505,+!p@chr17:15689487..15689505,+!0.67!6.54!MEIS3P1;;chr19:13136130..13136165,+!p6@NFIX!0.67!5.07!NFIX;;chr5:137804130..137804156,+!p5@EGR1!0.67!4.01!EGR1;;chr19:13134457..13134462,+!p5@NFIX!0.66!6.97!NFIX;;chr19:13136241..13136258,+!p7@NFIX!0.66!5.07!NFIX;;chr10:131635619..131635623,-!p6@EBF3!0.66!3.59!EBF3;;chr10:28034772..28034783,-!p4@MKX!0.66!3.59!MKX;;chr6:1612300..1612324,+!p3@FOXC1!0.66!3.59!FOXC1;;chr2:68592406..68592424,+!p1@PLEK!0.66!3.59!PLEK;;chr4:174451370..174451387,-!p1@HAND2!0.66!3.59!HAND2;;chr4:26324474..26324501,+!p16@RBPJ!0.66!3.59!RBPJ;;chr3:101568349..101568365,+!p1@NFKBIZ!0.65!211.95!NFKBIZ;;chr2:19558373..19558392,-!p1@OSR1!0.65!10.56!OSR1;;chr11:65686802..65686818,+!p6@DRAP1!0.65!6.54!DRAP1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.12!MEIS3;;chr9:16870659..16870675,-!p2@BNC2!0.65!4.43!BNC2;;chr5:137804357..137804390,+!p4@EGR1!0.65!4.22!EGR1;;chr7:1577111..1577132,+!p4@MAFK!0.65!4.01!MAFK;;chr3:178789522..178789564,-!p2@ZMAT3!0.64!28.71!ZMAT3;;chr10:77161650..77161661,-!p4@ZNF503!0.64!5.07!ZNF503;;chr10:31607702..31607755,+!p3@ZEB1!0.64!4.01!ZEB1;;chr10:131762385..131762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 +
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000153;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000213;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000214;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000327;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002078;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000982;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0006914
 +
|ffid_belonging_in_development=CL:0000134,CL:0000222
 
|fonse_cell_line=
 
|fonse_cell_line=
 
|fonse_cell_line_closure=
 
|fonse_cell_line_closure=
Line 34: Line 44:
 
|fonse_treatment_closure=
 
|fonse_treatment_closure=
 
|has_quality=
 
|has_quality=
 +
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.nobarcode.bam
 +
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.ctss.bed.gz
 +
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg19.nobarcode.rdna.fa.gz
 +
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg38.nobarcode.bam
 +
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Synoviocyte%252c%2520donor2.CNhs11992.11368-117I9.hg38.nobarcode.ctss.bed.gz
 
|id=FF:11368-117I9
 
|id=FF:11368-117I9
|is_a=EFO:0002091;;FF:0000002;;FF:0000187;;FF:0000210
+
|is_a=EFO:0002091;;FF:0000187
 +
|is_obsolete=
 +
|library_id=CNhs11992
 +
|library_id_phase_based=2:CNhs11992
 +
|microRNAs=
 +
|microRNAs_nn=
 +
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11368
 +
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GGTAGC.11368
 +
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11368
 +
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GGTAGC.11368
 
|name=Synoviocyte, donor2
 
|name=Synoviocyte, donor2
 
|namespace=FANTOM5
 
|namespace=FANTOM5
Line 41: Line 65:
 
|profile_cagescan=,,,
 
|profile_cagescan=,,,
 
|profile_hcage=CNhs11992,LSID837,release011,COMPLETED
 
|profile_hcage=CNhs11992,LSID837,release011,COMPLETED
|profile_rnaseq=,,,
+
|profile_rnaseq=
 
|profile_srnaseq=SRhi10004,,,
 
|profile_srnaseq=SRhi10004,,,
 +
|refex=http://refex.dbcls.jp/genelist.php?lang
 +
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|rna_box=117
 
|rna_box=117
 
|rna_catalog_number=CA408-R10a
 
|rna_catalog_number=CA408-R10a
Line 55: Line 82:
 
|rna_tube_id=117I9
 
|rna_tube_id=117I9
 
|rna_weight_ug=10
 
|rna_weight_ug=10
 +
|rnaseq_library_id=SRhi10004.GGTAGC
 
|sample_age=57
 
|sample_age=57
 +
|sample_category=primary cells
 
|sample_cell_catalog=N/A
 
|sample_cell_catalog=N/A
 
|sample_cell_line=
 
|sample_cell_line=
Line 68: Line 97:
 
|sample_ethnicity=C
 
|sample_ethnicity=C
 
|sample_experimental_condition=
 
|sample_experimental_condition=
 +
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.89838198745311e-223!GO:0005737;cytoplasm;2.23382996240353e-181!GO:0043231;intracellular membrane-bound organelle;1.60500393121719e-141!GO:0043227;membrane-bound organelle;1.60500393121719e-141!GO:0043226;organelle;4.90988096157757e-140!GO:0043229;intracellular organelle;1.36413311812551e-139!GO:0044444;cytoplasmic part;4.4310123194114e-136!GO:0044422;organelle part;2.26159507384372e-99!GO:0044446;intracellular organelle part;8.42190043580183e-98!GO:0005515;protein binding;5.03374397849716e-78!GO:0032991;macromolecular complex;2.67790518482208e-71!GO:0030529;ribonucleoprotein complex;1.29254031516759e-68!GO:0044237;cellular metabolic process;8.86116163290768e-66!GO:0044238;primary metabolic process;3.14019575038059e-65!GO:0043170;macromolecule metabolic process;1.84122242020673e-60!GO:0005739;mitochondrion;3.84399914286022e-60!GO:0043233;organelle lumen;1.3075023088856e-55!GO:0031974;membrane-enclosed lumen;1.3075023088856e-55!GO:0003723;RNA binding;1.12049163742064e-50!GO:0019538;protein metabolic process;5.58856189910589e-48!GO:0031090;organelle membrane;3.9187756241215e-47!GO:0005840;ribosome;7.24694940698604e-46!GO:0044428;nuclear part;2.71959659500192e-45!GO:0006412;translation;2.82503866129228e-44!GO:0044260;cellular macromolecule metabolic process;6.07789877865695e-43!GO:0044267;cellular protein metabolic process;2.3229693546016e-41!GO:0003735;structural constituent of ribosome;8.2730830949549e-41!GO:0044429;mitochondrial part;3.52931368196006e-40!GO:0005829;cytosol;5.94896439915806e-40!GO:0005634;nucleus;1.01085229442366e-39!GO:0016043;cellular component organization and biogenesis;4.47751303141758e-39!GO:0015031;protein transport;1.9073899239689e-38!GO:0033036;macromolecule localization;9.8084228664205e-38!GO:0009059;macromolecule biosynthetic process;1.99261387973191e-37!GO:0045184;establishment of protein localization;9.44250962111226e-37!GO:0033279;ribosomal subunit;1.27857807440096e-36!GO:0009058;biosynthetic process;2.53730279718634e-36!GO:0008104;protein localization;4.20368924107461e-36!GO:0043234;protein complex;1.08842832171511e-34!GO:0044249;cellular biosynthetic process;8.03159291212897e-34!GO:0031967;organelle envelope;3.72516875506366e-32!GO:0031975;envelope;8.81611982483954e-32!GO:0006396;RNA processing;7.37018647191972e-31!GO:0031981;nuclear lumen;1.28186242123928e-29!GO:0005740;mitochondrial envelope;4.49337514641731e-27!GO:0046907;intracellular transport;5.14175584184958e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.17214452791544e-26!GO:0010467;gene expression;1.37989629672361e-26!GO:0016071;mRNA metabolic process;2.22504608041267e-26!GO:0031966;mitochondrial membrane;9.74491463470827e-26!GO:0043283;biopolymer metabolic process;4.52635081827409e-25!GO:0006886;intracellular protein transport;5.6011240529634e-25!GO:0008380;RNA splicing;8.81563696282357e-25!GO:0065003;macromolecular complex assembly;3.21238935616684e-24!GO:0019866;organelle inner membrane;4.54493774505615e-24!GO:0005783;endoplasmic reticulum;3.308164921758e-23!GO:0005743;mitochondrial inner membrane;3.90037207223129e-23!GO:0022607;cellular component assembly;2.01552301173717e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.4825366778231e-22!GO:0006397;mRNA processing;3.57270443156373e-22!GO:0044445;cytosolic part;9.67744565064796e-21!GO:0006119;oxidative phosphorylation;3.29101126972333e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.59656567282795e-19!GO:0015935;small ribosomal subunit;5.07883536653655e-19!GO:0006457;protein folding;1.10956463170131e-18!GO:0015934;large ribosomal subunit;1.41066482611066e-18!GO:0044455;mitochondrial membrane part;3.70541075311515e-18!GO:0005654;nucleoplasm;5.06341231538528e-18!GO:0005681;spliceosome;1.03183674090383e-17!GO:0051641;cellular localization;1.3349683178238e-17!GO:0005794;Golgi apparatus;1.64449386388073e-17!GO:0012505;endomembrane system;1.6562587804046e-17!GO:0048770;pigment granule;1.6562587804046e-17!GO:0042470;melanosome;1.6562587804046e-17!GO:0051649;establishment of cellular localization;2.24589841763023e-17!GO:0006996;organelle organization and biogenesis;1.09067131351435e-16!GO:0008134;transcription factor binding;1.15921544700801e-16!GO:0044432;endoplasmic reticulum part;1.35891832700868e-16!GO:0031980;mitochondrial lumen;4.45826029323374e-16!GO:0005759;mitochondrial matrix;4.45826029323374e-16!GO:0012501;programmed cell death;5.55568593029679e-16!GO:0006915;apoptosis;9.19653611263455e-16!GO:0005746;mitochondrial respiratory chain;9.49341645392646e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.48142284801456e-15!GO:0022618;protein-RNA complex assembly;2.96002217206992e-15!GO:0044451;nucleoplasm part;3.08799456009631e-15!GO:0043228;non-membrane-bound organelle;5.20340892066902e-15!GO:0043232;intracellular non-membrane-bound organelle;5.20340892066902e-15!GO:0043285;biopolymer catabolic process;5.69259396698584e-15!GO:0008219;cell death;7.3310660516387e-15!GO:0016265;death;7.3310660516387e-15!GO:0044265;cellular macromolecule catabolic process;8.17953927742362e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.20412837812974e-15!GO:0051186;cofactor metabolic process;1.63924958345968e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.91672572106435e-14!GO:0016192;vesicle-mediated transport;5.23753442143048e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;6.60810815293522e-14!GO:0050136;NADH dehydrogenase (quinone) activity;7.09231559292003e-14!GO:0003954;NADH dehydrogenase activity;7.09231559292003e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.09231559292003e-14!GO:0006512;ubiquitin cycle;1.02111206702387e-13!GO:0044257;cellular protein catabolic process;1.38796261386144e-13!GO:0019941;modification-dependent protein catabolic process;1.38796261386144e-13!GO:0043632;modification-dependent macromolecule catabolic process;1.38796261386144e-13!GO:0009057;macromolecule catabolic process;1.43518286599836e-13!GO:0008135;translation factor activity, nucleic acid binding;2.2976283491259e-13!GO:0044248;cellular catabolic process;2.80520931291617e-13!GO:0006511;ubiquitin-dependent protein catabolic process;2.80520931291617e-13!GO:0005761;mitochondrial ribosome;2.80520931291617e-13!GO:0000313;organellar ribosome;2.80520931291617e-13!GO:0016874;ligase activity;3.20340621105364e-13!GO:0030163;protein catabolic process;3.20340621105364e-13!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.20340621105364e-13!GO:0006605;protein targeting;4.23860276839251e-13!GO:0005730;nucleolus;1.26492067552947e-12!GO:0016462;pyrophosphatase activity;1.38124121069699e-12!GO:0048193;Golgi vesicle transport;1.42458688815019e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.49478341473314e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.65175211867064e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;2.22976709367755e-12!GO:0048523;negative regulation of cellular process;2.41280735300823e-12!GO:0005793;ER-Golgi intermediate compartment;2.58969744025079e-12!GO:0051082;unfolded protein binding;2.86916078266029e-12!GO:0030964;NADH dehydrogenase complex (quinone);3.98097261507071e-12!GO:0045271;respiratory chain complex I;3.98097261507071e-12!GO:0005747;mitochondrial respiratory chain complex I;3.98097261507071e-12!GO:0042775;organelle ATP synthesis coupled electron transport;4.85486036783334e-12!GO:0042773;ATP synthesis coupled electron transport;4.85486036783334e-12!GO:0017111;nucleoside-triphosphatase activity;6.5169881381811e-12!GO:0009055;electron carrier activity;7.00956057584037e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.19284203170861e-11!GO:0006732;coenzyme metabolic process;2.38200197103331e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.84707850128752e-11!GO:0048519;negative regulation of biological process;6.87510459509388e-11!GO:0005789;endoplasmic reticulum membrane;1.34015908765052e-10!GO:0000166;nucleotide binding;1.9571577626535e-10!GO:0003743;translation initiation factor activity;2.57731626726271e-10!GO:0042981;regulation of apoptosis;2.83393420444758e-10!GO:0006413;translational initiation;3.28729198269532e-10!GO:0043067;regulation of programmed cell death;4.28724647478203e-10!GO:0003712;transcription cofactor activity;6.10265461754615e-10!GO:0003676;nucleic acid binding;6.19702644506706e-10!GO:0006259;DNA metabolic process;1.05684572103405e-09!GO:0043412;biopolymer modification;1.46036065258617e-09!GO:0009056;catabolic process;1.67650815919622e-09!GO:0008361;regulation of cell size;1.78952176830847e-09!GO:0016049;cell growth;1.83136772659785e-09!GO:0005768;endosome;2.05562866118789e-09!GO:0006446;regulation of translational initiation;2.40134341109448e-09!GO:0005788;endoplasmic reticulum lumen;2.99023558439323e-09!GO:0005773;vacuole;3.06138449261037e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;3.39684220573898e-09!GO:0000375;RNA splicing, via transesterification reactions;3.39684220573898e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.39684220573898e-09!GO:0016070;RNA metabolic process;4.13511012298656e-09!GO:0016491;oxidoreductase activity;4.9879150552783e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.9879150552783e-09!GO:0001558;regulation of cell growth;5.41344765492945e-09!GO:0006366;transcription from RNA polymerase II promoter;5.48125773480969e-09!GO:0006464;protein modification process;9.07546375424318e-09!GO:0008639;small protein conjugating enzyme activity;2.20506871662321e-08!GO:0009150;purine ribonucleotide metabolic process;2.91090996630594e-08!GO:0006163;purine nucleotide metabolic process;3.10961971354546e-08!GO:0016604;nuclear body;3.12900910301203e-08!GO:0000323;lytic vacuole;3.16517839413465e-08!GO:0005764;lysosome;3.16517839413465e-08!GO:0043069;negative regulation of programmed cell death;3.94111505272089e-08!GO:0004842;ubiquitin-protein ligase activity;4.16381158852228e-08!GO:0009259;ribonucleotide metabolic process;4.31433308250378e-08!GO:0043066;negative regulation of apoptosis;4.54496097306025e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.55853975544346e-08!GO:0042254;ribosome biogenesis and assembly;4.9422327216909e-08!GO:0009060;aerobic respiration;5.37367941008735e-08!GO:0017038;protein import;5.81184274497864e-08!GO:0003924;GTPase activity;7.52724214204833e-08!GO:0019787;small conjugating protein ligase activity;7.55479111553922e-08!GO:0006461;protein complex assembly;8.38318912961587e-08!GO:0050794;regulation of cellular process;8.56965202441346e-08!GO:0005839;proteasome core complex (sensu Eukaryota);1.06465004378474e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.13973133092724e-07!GO:0044431;Golgi apparatus part;1.14174614071254e-07!GO:0051246;regulation of protein metabolic process;1.17090364951029e-07!GO:0006164;purine nucleotide biosynthetic process;1.25387249765247e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.35202597678808e-07!GO:0006913;nucleocytoplasmic transport;1.38016566471363e-07!GO:0015986;ATP synthesis coupled proton transport;1.42371523786355e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.42371523786355e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.54869188339168e-07!GO:0006916;anti-apoptosis;1.77339028139426e-07!GO:0045333;cellular respiration;2.09032017080356e-07!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.18300122131689e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.2777468868139e-07!GO:0009144;purine nucleoside triphosphate metabolic process;2.2777468868139e-07!GO:0051169;nuclear transport;2.44534705503195e-07!GO:0030120;vesicle coat;2.51852622262791e-07!GO:0030662;coated vesicle membrane;2.51852622262791e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.60281070068239e-07!GO:0009199;ribonucleoside triphosphate metabolic process;2.81764873615579e-07!GO:0015078;hydrogen ion transmembrane transporter activity;3.01855605699176e-07!GO:0009141;nucleoside triphosphate metabolic process;3.28834002717746e-07!GO:0009260;ribonucleotide biosynthetic process;3.30841561190749e-07!GO:0043687;post-translational protein modification;4.777958763044e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;4.87672293546721e-07!GO:0008565;protein transporter activity;5.20652467122147e-07!GO:0017076;purine nucleotide binding;5.29813627953818e-07!GO:0051188;cofactor biosynthetic process;5.4013078063652e-07!GO:0044440;endosomal part;5.4013078063652e-07!GO:0010008;endosome membrane;5.4013078063652e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.6359394793207e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.6359394793207e-07!GO:0019829;cation-transporting ATPase activity;6.3878023529042e-07!GO:0016469;proton-transporting two-sector ATPase complex;6.69335994805324e-07!GO:0004298;threonine endopeptidase activity;6.82464495379435e-07!GO:0009142;nucleoside triphosphate biosynthetic process;7.19352306272772e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.19352306272772e-07!GO:0007049;cell cycle;7.73662561037141e-07!GO:0048475;coated membrane;8.36325705825173e-07!GO:0030117;membrane coat;8.36325705825173e-07!GO:0016881;acid-amino acid ligase activity;8.62112203523947e-07!GO:0051789;response to protein stimulus;1.0002377969607e-06!GO:0006986;response to unfolded protein;1.0002377969607e-06!GO:0032553;ribonucleotide binding;1.08685282667002e-06!GO:0032555;purine ribonucleotide binding;1.08685282667002e-06!GO:0005635;nuclear envelope;1.16408202725881e-06!GO:0046034;ATP metabolic process;1.20004429089909e-06!GO:0006099;tricarboxylic acid cycle;1.28826208217014e-06!GO:0046356;acetyl-CoA catabolic process;1.28826208217014e-06!GO:0051187;cofactor catabolic process;1.48849302289971e-06!GO:0016607;nuclear speck;1.74008030325744e-06!GO:0048522;positive regulation of cellular process;1.9535571336678e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.97435100636941e-06!GO:0040008;regulation of growth;2.31628497367355e-06!GO:0016564;transcription repressor activity;2.47828066664046e-06!GO:0006754;ATP biosynthetic process;2.57081060348327e-06!GO:0006753;nucleoside phosphate metabolic process;2.57081060348327e-06!GO:0031988;membrane-bound vesicle;3.06011435228405e-06!GO:0031965;nuclear membrane;3.07019133189875e-06!GO:0031324;negative regulation of cellular metabolic process;3.25911984218789e-06!GO:0009109;coenzyme catabolic process;3.66494443323428e-06!GO:0003714;transcription corepressor activity;3.692916972182e-06!GO:0030532;small nuclear ribonucleoprotein complex;4.00636076603201e-06!GO:0016023;cytoplasmic membrane-bound vesicle;4.06004373370273e-06!GO:0006084;acetyl-CoA metabolic process;5.2015639244486e-06!GO:0005770;late endosome;5.79153686861921e-06!GO:0006399;tRNA metabolic process;7.30471385325555e-06!GO:0031982;vesicle;7.77795885022494e-06!GO:0050789;regulation of biological process;7.8650450410959e-06!GO:0007243;protein kinase cascade;8.050168766685e-06!GO:0045259;proton-transporting ATP synthase complex;8.14276164319233e-06!GO:0030036;actin cytoskeleton organization and biogenesis;8.84525819223279e-06!GO:0005525;GTP binding;9.45337314489503e-06!GO:0031252;leading edge;1.0088733644403e-05!GO:0000139;Golgi membrane;1.07572195330095e-05!GO:0051726;regulation of cell cycle;1.13959655211477e-05!GO:0007005;mitochondrion organization and biogenesis;1.16750404234075e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;1.32977873943483e-05!GO:0004812;aminoacyl-tRNA ligase activity;1.32977873943483e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;1.32977873943483e-05!GO:0031410;cytoplasmic vesicle;1.37764693206236e-05!GO:0000074;regulation of progression through cell cycle;1.56667247871296e-05!GO:0009108;coenzyme biosynthetic process;1.60737021242087e-05!GO:0043038;amino acid activation;2.00421611016559e-05!GO:0006418;tRNA aminoacylation for protein translation;2.00421611016559e-05!GO:0043039;tRNA aminoacylation;2.00421611016559e-05!GO:0006974;response to DNA damage stimulus;2.04546718121348e-05!GO:0006091;generation of precursor metabolites and energy;2.13496180766323e-05!GO:0008654;phospholipid biosynthetic process;2.29312415601589e-05!GO:0005791;rough endoplasmic reticulum;2.29312415601589e-05!GO:0044262;cellular carbohydrate metabolic process;2.55899728144524e-05!GO:0009892;negative regulation of metabolic process;2.56608034606647e-05!GO:0005762;mitochondrial large ribosomal subunit;2.66897835716519e-05!GO:0000315;organellar large ribosomal subunit;2.66897835716519e-05!GO:0045454;cell redox homeostasis;2.71445249703387e-05!GO:0065002;intracellular protein transport across a membrane;2.71445249703387e-05!GO:0045786;negative regulation of progression through cell cycle;2.80190287731993e-05!GO:0051170;nuclear import;2.84801098885732e-05!GO:0005769;early endosome;2.87542490150198e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.89770214395552e-05!GO:0005798;Golgi-associated vesicle;2.89937604426897e-05!GO:0044453;nuclear membrane part;2.95762970346257e-05!GO:0006606;protein import into nucleus;3.14905342420251e-05!GO:0009117;nucleotide metabolic process;3.15940787023121e-05!GO:0016853;isomerase activity;3.4302474732975e-05!GO:0006364;rRNA processing;3.93172452397465e-05!GO:0016787;hydrolase activity;4.08867002656194e-05!GO:0000151;ubiquitin ligase complex;4.11434525709237e-05!GO:0003697;single-stranded DNA binding;4.58304617052119e-05!GO:0048518;positive regulation of biological process;4.62786158507373e-05!GO:0006613;cotranslational protein targeting to membrane;4.66856209553394e-05!GO:0042623;ATPase activity, coupled;4.95951655623116e-05!GO:0019843;rRNA binding;5.10541306954253e-05!GO:0005905;coated pit;5.20981259700314e-05!GO:0016072;rRNA metabolic process;5.47380233392448e-05!GO:0043566;structure-specific DNA binding;6.06536616269459e-05!GO:0000245;spliceosome assembly;6.18265714446819e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.23837419267834e-05!GO:0016887;ATPase activity;8.28789280033141e-05!GO:0048468;cell development;8.95304581306285e-05!GO:0022402;cell cycle process;9.04557272731558e-05!GO:0005667;transcription factor complex;9.32268007605471e-05!GO:0032446;protein modification by small protein conjugation;9.77596735509695e-05!GO:0003713;transcription coactivator activity;0.000103780083027113!GO:0016567;protein ubiquitination;0.000105235540412951!GO:0030029;actin filament-based process;0.000115511775003107!GO:0032561;guanyl ribonucleotide binding;0.000121801050800624!GO:0019001;guanyl nucleotide binding;0.000121801050800624!GO:0016044;membrane organization and biogenesis;0.000122563369124124!GO:0016481;negative regulation of transcription;0.000124210323716334!GO:0006752;group transfer coenzyme metabolic process;0.000130863454179705!GO:0016859;cis-trans isomerase activity;0.000133612286072701!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000138084472468754!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000144118065398088!GO:0030133;transport vesicle;0.000144399287037857!GO:0033116;ER-Golgi intermediate compartment membrane;0.000157136127994234!GO:0006325;establishment and/or maintenance of chromatin architecture;0.00016036519551253!GO:0006950;response to stress;0.000166164488346063!GO:0065004;protein-DNA complex assembly;0.000169033486776698!GO:0030867;rough endoplasmic reticulum membrane;0.000183011714383681!GO:0031968;organelle outer membrane;0.000192278010406407!GO:0009719;response to endogenous stimulus;0.000208705837125435!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000208705837125435!GO:0019867;outer membrane;0.000209382221863436!GO:0007264;small GTPase mediated signal transduction;0.000209382221863436!GO:0016563;transcription activator activity;0.000210575453336072!GO:0008026;ATP-dependent helicase activity;0.000215939402710185!GO:0030554;adenyl nucleotide binding;0.000232179355647957!GO:0006793;phosphorus metabolic process;0.000280776298617215!GO:0006796;phosphate metabolic process;0.000280776298617215!GO:0005741;mitochondrial outer membrane;0.000283911665458293!GO:0000314;organellar small ribosomal subunit;0.000301029294154713!GO:0005763;mitochondrial small ribosomal subunit;0.000301029294154713!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000351242760838934!GO:0005524;ATP binding;0.000367208427150717!GO:0006323;DNA packaging;0.000381464488251912!GO:0032559;adenyl ribonucleotide binding;0.000383695253956276!GO:0005643;nuclear pore;0.000419538110192783!GO:0030041;actin filament polymerization;0.000442846386261661!GO:0005048;signal sequence binding;0.0004458483201771!GO:0043065;positive regulation of apoptosis;0.000471982745225641!GO:0005520;insulin-like growth factor binding;0.000527932339622405!GO:0043021;ribonucleoprotein binding;0.000556282960138169!GO:0043068;positive regulation of programmed cell death;0.000645444747720874!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000645444747720874!GO:0006979;response to oxidative stress;0.000678437030612221!GO:0046474;glycerophospholipid biosynthetic process;0.000678517311485637!GO:0005885;Arp2/3 protein complex;0.000779463866123191!GO:0019899;enzyme binding;0.00084905019917585!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000923039430854189!GO:0006612;protein targeting to membrane;0.00092745124136732!GO:0043623;cellular protein complex assembly;0.000983761898276545!GO:0043681;protein import into mitochondrion;0.00101613631916462!GO:0016310;phosphorylation;0.00103871663578051!GO:0006281;DNA repair;0.00103871663578051!GO:0051920;peroxiredoxin activity;0.00108102496597308!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00109210077678443!GO:0004386;helicase activity;0.00109210077678443!GO:0008154;actin polymerization and/or depolymerization;0.00109495074253883!GO:0030132;clathrin coat of coated pit;0.0013460083734555!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00137680445024367!GO:0006333;chromatin assembly or disassembly;0.00142156086850409!GO:0004576;oligosaccharyl transferase activity;0.00153768357549089!GO:0045892;negative regulation of transcription, DNA-dependent;0.00164449151904648!GO:0043284;biopolymer biosynthetic process;0.00185342559726321!GO:0065007;biological regulation;0.00189467947268215!GO:0006509;membrane protein ectodomain proteolysis;0.00189951203518507!GO:0033619;membrane protein proteolysis;0.00189951203518507!GO:0008250;oligosaccharyl transferase complex;0.00193137633333802!GO:0016740;transferase activity;0.00197773901067705!GO:0030663;COPI coated vesicle membrane;0.00201652301668095!GO:0030126;COPI vesicle coat;0.00201652301668095!GO:0046930;pore complex;0.0021001528039226!GO:0065009;regulation of a molecular function;0.00215023221109535!GO:0009967;positive regulation of signal transduction;0.0022098934379898!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00228881319250906!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00228881319250906!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00228881319250906!GO:0051276;chromosome organization and biogenesis;0.00237854960393842!GO:0051427;hormone receptor binding;0.00248584926707269!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00250011110506074!GO:0003724;RNA helicase activity;0.00256130464739485!GO:0043488;regulation of mRNA stability;0.00257028778904787!GO:0043487;regulation of RNA stability;0.00257028778904787!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00267534784658539!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00275122499662647!GO:0046489;phosphoinositide biosynthetic process;0.00282553459770741!GO:0000278;mitotic cell cycle;0.00299008385336216!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00301799932137566!GO:0006917;induction of apoptosis;0.00301865858831763!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00303389802267555!GO:0001726;ruffle;0.00308588340893977!GO:0043433;negative regulation of transcription factor activity;0.0031040506260025!GO:0050657;nucleic acid transport;0.00318771495852978!GO:0051236;establishment of RNA localization;0.00318771495852978!GO:0050658;RNA transport;0.00318771495852978!GO:0051252;regulation of RNA metabolic process;0.00331389987003208!GO:0006403;RNA localization;0.00342391417551094!GO:0051287;NAD binding;0.00353180017586668!GO:0006354;RNA elongation;0.00354829651166217!GO:0007040;lysosome organization and biogenesis;0.00371007833713464!GO:0031543;peptidyl-proline dioxygenase activity;0.00371007833713464!GO:0030118;clathrin coat;0.00379966444896197!GO:0006414;translational elongation;0.00383684517342601!GO:0046467;membrane lipid biosynthetic process;0.00391708527844076!GO:0018196;peptidyl-asparagine modification;0.00400481139012769!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00400481139012769!GO:0016779;nucleotidyltransferase activity;0.00408803722300135!GO:0003729;mRNA binding;0.00420926708730476!GO:0012502;induction of programmed cell death;0.00422175102208785!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00425195684038088!GO:0000785;chromatin;0.00433256411182727!GO:0035257;nuclear hormone receptor binding;0.00436552350658007!GO:0004177;aminopeptidase activity;0.00463828459243612!GO:0007033;vacuole organization and biogenesis;0.00465784454606827!GO:0008283;cell proliferation;0.00475026198879243!GO:0016197;endosome transport;0.0048563035639995!GO:0005774;vacuolar membrane;0.00492168308493332!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00504848585378471!GO:0008632;apoptotic program;0.00508148856338213!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0051861292110068!GO:0022890;inorganic cation transmembrane transporter activity;0.00537303264568882!GO:0006334;nucleosome assembly;0.00541062266749437!GO:0030137;COPI-coated vesicle;0.00541166077093159!GO:0050662;coenzyme binding;0.00541166077093159!GO:0030027;lamellipodium;0.00544934751537709!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00570725468894188!GO:0030658;transport vesicle membrane;0.00580913543912391!GO:0007050;cell cycle arrest;0.0058786315036186!GO:0051235;maintenance of localization;0.00588370576019238!GO:0019752;carboxylic acid metabolic process;0.00589163622788636!GO:0006740;NADPH regeneration;0.00596384008176315!GO:0006098;pentose-phosphate shunt;0.00596384008176315!GO:0006082;organic acid metabolic process;0.00612393767493443!GO:0006626;protein targeting to mitochondrion;0.00632348223711187!GO:0006650;glycerophospholipid metabolic process;0.00632348223711187!GO:0019798;procollagen-proline dioxygenase activity;0.00634429183040574!GO:0003746;translation elongation factor activity;0.00641723589469931!GO:0016568;chromatin modification;0.00643883266848807!GO:0006693;prostaglandin metabolic process;0.00671373315643071!GO:0006692;prostanoid metabolic process;0.00671373315643071!GO:0048500;signal recognition particle;0.00671766505546508!GO:0051087;chaperone binding;0.00682461915898169!GO:0048487;beta-tubulin binding;0.00730155528417521!GO:0030145;manganese ion binding;0.00732092896432212!GO:0031902;late endosome membrane;0.00772293963581286!GO:0031901;early endosome membrane;0.00788451634594256!GO:0005869;dynactin complex;0.00805717223296286!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00821756324265974!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00821756324265974!GO:0048471;perinuclear region of cytoplasm;0.00827265955185656!GO:0031497;chromatin assembly;0.00849854386931328!GO:0006897;endocytosis;0.00849854386931328!GO:0010324;membrane invagination;0.00849854386931328!GO:0006402;mRNA catabolic process;0.00860244117265374!GO:0045792;negative regulation of cell size;0.00863397417479658!GO:0031418;L-ascorbic acid binding;0.00888248990334251!GO:0006260;DNA replication;0.00897421204936911!GO:0008092;cytoskeletal protein binding;0.00906463332256936!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00907648502980251!GO:0015002;heme-copper terminal oxidase activity;0.00907648502980251!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00907648502980251!GO:0004129;cytochrome-c oxidase activity;0.00907648502980251!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00910986239841868!GO:0015399;primary active transmembrane transporter activity;0.00910986239841868!GO:0030308;negative regulation of cell growth;0.0091765220387923!GO:0006891;intra-Golgi vesicle-mediated transport;0.00947363932842604!GO:0008180;signalosome;0.0095367713661644!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00977139729519835!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00996500943443782!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.010005113295805!GO:0007006;mitochondrial membrane organization and biogenesis;0.010005113295805!GO:0005813;centrosome;0.0100272736501461!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.010039109763464!GO:0005765;lysosomal membrane;0.0100457254493767!GO:0003756;protein disulfide isomerase activity;0.0106687016411971!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0106687016411971!GO:0016860;intramolecular oxidoreductase activity;0.0107801876309508!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0109947657809914!GO:0051325;interphase;0.0113691331136165!GO:0009165;nucleotide biosynthetic process;0.0113861477930837!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.0114021965326481!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.0114021965326481!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.01140601060502!GO:0045047;protein targeting to ER;0.01140601060502!GO:0003711;transcription elongation regulator activity;0.0114405611243238!GO:0030833;regulation of actin filament polymerization;0.0118953704169463!GO:0003899;DNA-directed RNA polymerase activity;0.0121286316513884!GO:0030125;clathrin vesicle coat;0.0127079076968533!GO:0030665;clathrin coated vesicle membrane;0.0127079076968533!GO:0006643;membrane lipid metabolic process;0.0128567803948307!GO:0008139;nuclear localization sequence binding;0.0128840142853777!GO:0051329;interphase of mitotic cell cycle;0.0130692928736762!GO:0030176;integral to endoplasmic reticulum membrane;0.0131262204767871!GO:0051101;regulation of DNA binding;0.0131458558985371!GO:0051128;regulation of cellular component organization and biogenesis;0.0132111912725586!GO:0051059;NF-kappaB binding;0.0132239040330471!GO:0045045;secretory pathway;0.0134686189096307!GO:0050811;GABA receptor binding;0.0135606015257141!GO:0006401;RNA catabolic process;0.0136800209266018!GO:0051540;metal cluster binding;0.0136947719489985!GO:0051536;iron-sulfur cluster binding;0.0136947719489985!GO:0044437;vacuolar part;0.0137233894834952!GO:0006839;mitochondrial transport;0.0145631398199299!GO:0008610;lipid biosynthetic process;0.0145631398199299!GO:0006892;post-Golgi vesicle-mediated transport;0.0149463780361743!GO:0005975;carbohydrate metabolic process;0.0151381735109329!GO:0019222;regulation of metabolic process;0.0152797992486115!GO:0006383;transcription from RNA polymerase III promoter;0.0153263275957148!GO:0008383;manganese superoxide dismutase activity;0.0153498957976214!GO:0001315;age-dependent response to reactive oxygen species;0.0153498957976214!GO:0003690;double-stranded DNA binding;0.0158240192783126!GO:0006417;regulation of translation;0.0159461973754885!GO:0000902;cell morphogenesis;0.0160293652540136!GO:0032989;cellular structure morphogenesis;0.0160293652540136!GO:0006118;electron transport;0.0161461226650364!GO:0030660;Golgi-associated vesicle membrane;0.0161461226650364!GO:0030119;AP-type membrane coat adaptor complex;0.0161461226650364!GO:0043022;ribosome binding;0.0161706092905561!GO:0017166;vinculin binding;0.0161931708712434!GO:0045941;positive regulation of transcription;0.0162592086073888!GO:0033673;negative regulation of kinase activity;0.0162592086073888!GO:0006469;negative regulation of protein kinase activity;0.0162592086073888!GO:0031072;heat shock protein binding;0.0163425020652018!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0165517208756562!GO:0030384;phosphoinositide metabolic process;0.0165712776920748!GO:0006506;GPI anchor biosynthetic process;0.0165712776920748!GO:0006497;protein amino acid lipidation;0.0167643232756589!GO:0007265;Ras protein signal transduction;0.016941027066515!GO:0008312;7S RNA binding;0.0170128357981182!GO:0045893;positive regulation of transcription, DNA-dependent;0.0170524206702023!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0171343520361099!GO:0005815;microtubule organizing center;0.0173419515898604!GO:0001872;zymosan binding;0.0174988812092884!GO:0001878;response to yeast;0.0174988812092884!GO:0005694;chromosome;0.0175902201570054!GO:0001516;prostaglandin biosynthetic process;0.0178396247603324!GO:0046457;prostanoid biosynthetic process;0.0178396247603324!GO:0008186;RNA-dependent ATPase activity;0.0178602666901555!GO:0007010;cytoskeleton organization and biogenesis;0.0178602666901555!GO:0006818;hydrogen transport;0.0181623853515348!GO:0015992;proton transport;0.0182267115475465!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0182996189237598!GO:0009615;response to virus;0.0185103687284576!GO:0001527;microfibril;0.0185248739311383!GO:0051098;regulation of binding;0.0186073758879809!GO:0046483;heterocycle metabolic process;0.0186073758879809!GO:0030134;ER to Golgi transport vesicle;0.0188090781217179!GO:0035035;histone acetyltransferase binding;0.0189749685243494!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0190475095246475!GO:0033043;regulation of organelle organization and biogenesis;0.0190475095246475!GO:0051028;mRNA transport;0.0191567271171683!GO:0045185;maintenance of protein localization;0.0194953766506146!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0195603521299988!GO:0008637;apoptotic mitochondrial changes;0.0196789429520417!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0215249896387161!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0220620157959369!GO:0051348;negative regulation of transferase activity;0.0225357624561714!GO:0000049;tRNA binding;0.0225357624561714!GO:0006778;porphyrin metabolic process;0.0226032904720808!GO:0033013;tetrapyrrole metabolic process;0.0226032904720808!GO:0000096;sulfur amino acid metabolic process;0.02289410069836!GO:0016363;nuclear matrix;0.02289410069836!GO:0031272;regulation of pseudopodium formation;0.02289410069836!GO:0031269;pseudopodium formation;0.02289410069836!GO:0031344;regulation of cell projection organization and biogenesis;0.02289410069836!GO:0031268;pseudopodium organization and biogenesis;0.02289410069836!GO:0031346;positive regulation of cell projection organization and biogenesis;0.02289410069836!GO:0031274;positive regulation of pseudopodium formation;0.02289410069836!GO:0051270;regulation of cell motility;0.0230230332424373!GO:0042802;identical protein binding;0.0233630244265798!GO:0006505;GPI anchor metabolic process;0.0234848766228162!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0234848766228162!GO:0032940;secretion by cell;0.0234848766228162!GO:0019838;growth factor binding;0.0235168560211094!GO:0030127;COPII vesicle coat;0.0235168560211094!GO:0012507;ER to Golgi transport vesicle membrane;0.0235168560211094!GO:0006595;polyamine metabolic process;0.0235497398352597!GO:0006790;sulfur metabolic process;0.0235497398352597!GO:0030659;cytoplasmic vesicle membrane;0.0236050551520966!GO:0032507;maintenance of cellular protein localization;0.0238956538032791!GO:0007242;intracellular signaling cascade;0.0242566169924757!GO:0006749;glutathione metabolic process;0.0248123720505487!GO:0031529;ruffle organization and biogenesis;0.0248242461627546!GO:0007034;vacuolar transport;0.026673852268948!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0268856856235176!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0274291840000534!GO:0004784;superoxide dismutase activity;0.0274291840000534!GO:0005862;muscle thin filament tropomyosin;0.0276300022342123!GO:0030131;clathrin adaptor complex;0.0278623901996106!GO:0006644;phospholipid metabolic process;0.0279828934964908!GO:0006739;NADP metabolic process;0.0282386228745908!GO:0005684;U2-dependent spliceosome;0.0282795783780102!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0287598706095518!GO:0051090;regulation of transcription factor activity;0.0290470558173256!GO:0016408;C-acyltransferase activity;0.0292677415343157!GO:0030503;regulation of cell redox homeostasis;0.0295058362604911!GO:0009116;nucleoside metabolic process;0.0295518748352049!GO:0045926;negative regulation of growth;0.0295518748352049!GO:0030032;lamellipodium biogenesis;0.0295518748352049!GO:0042158;lipoprotein biosynthetic process;0.0296325381644131!GO:0045334;clathrin-coated endocytic vesicle;0.0298649386416014!GO:0031589;cell-substrate adhesion;0.0299470240609897!GO:0005100;Rho GTPase activator activity;0.0303186760387367!GO:0000082;G1/S transition of mitotic cell cycle;0.03139102788963!GO:0008484;sulfuric ester hydrolase activity;0.0320499700402381!GO:0042168;heme metabolic process;0.0332142134006104!GO:0044427;chromosomal part;0.0332178439109993!GO:0006635;fatty acid beta-oxidation;0.0332894843620695!GO:0046519;sphingoid metabolic process;0.0334566692596259!GO:0006289;nucleotide-excision repair;0.0335816519138153!GO:0051539;4 iron, 4 sulfur cluster binding;0.0341398638540781!GO:0030880;RNA polymerase complex;0.0350174299793619!GO:0031625;ubiquitin protein ligase binding;0.0351319969493969!GO:0005583;fibrillar collagen;0.0358260140875885!GO:0006213;pyrimidine nucleoside metabolic process;0.0359094889946974!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0359624922177259!GO:0007021;tubulin folding;0.0365378212783838!GO:0008047;enzyme activator activity;0.0373409157422278!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0378423898039411!GO:0004004;ATP-dependent RNA helicase activity;0.0381647289255986!GO:0007041;lysosomal transport;0.0382710168886761!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0388152092143882!GO:0044420;extracellular matrix part;0.039759293786602!GO:0009112;nucleobase metabolic process;0.039759293786602!GO:0043492;ATPase activity, coupled to movement of substances;0.0398630894335176!GO:0005832;chaperonin-containing T-complex;0.0398630894335176!GO:0007160;cell-matrix adhesion;0.0403465041999985!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0420650077168576!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.0420650077168576!GO:0046813;virion attachment, binding of host cell surface receptor;0.0420650077168576!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.0420650077168576!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.042157150576936!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.042396080693155!GO:0009966;regulation of signal transduction;0.042396080693155!GO:0030518;steroid hormone receptor signaling pathway;0.042396080693155!GO:0030128;clathrin coat of endocytic vesicle;0.042396080693155!GO:0030669;clathrin-coated endocytic vesicle membrane;0.042396080693155!GO:0030122;AP-2 adaptor complex;0.042396080693155!GO:0006984;ER-nuclear signaling pathway;0.0430699980734218!GO:0006352;transcription initiation;0.043362102912147!GO:0051651;maintenance of cellular localization;0.0440609380777292!GO:0016272;prefoldin complex;0.0443775882585197!GO:0015630;microtubule cytoskeleton;0.0444434308624755!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0455174363860788!GO:0030031;cell projection biogenesis;0.0455362688819041!GO:0005801;cis-Golgi network;0.0455362688819041!GO:0015036;disulfide oxidoreductase activity;0.045756061827963!GO:0009119;ribonucleoside metabolic process;0.045756061827963!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.045756061827963!GO:0016584;nucleosome positioning;0.0458607587758611!GO:0004722;protein serine/threonine phosphatase activity;0.046432406881918!GO:0032535;regulation of cellular component size;0.0464976677920946!GO:0012506;vesicle membrane;0.0469279957251575!GO:0030832;regulation of actin filament length;0.0481993298923784!GO:0004228;gelatinase A activity;0.0482980435126737!GO:0001955;blood vessel maturation;0.0482980435126737!GO:0051168;nuclear export;0.0482980435126737!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0482980435126737!GO:0010257;NADH dehydrogenase complex assembly;0.0482980435126737!GO:0033108;mitochondrial respiratory chain complex assembly;0.0482980435126737!GO:0008022;protein C-terminus binding;0.04861885766523!GO:0044433;cytoplasmic vesicle part;0.0492309576779817!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0492908953753641!GO:0001666;response to hypoxia;0.0493311127947951!GO:0030199;collagen fibril organization;0.0495183597703066
 
|sample_id=11368
 
|sample_id=11368
 
|sample_note=
 
|sample_note=
Line 75: Line 105:
 
|sample_tissue=synovium
 
|sample_tissue=synovium
 
|top_motifs=ESR1:2.25820900196;ALX4:2.12335028849;HES1:2.11443110855;UFEwm:1.85992408126;PAX1,9:1.760527234;TFAP4:1.74412095869;FOXL1:1.70654533408;EVI1:1.66743143849;TAL1_TCF{3,4,12}:1.60738324278;EN1,2:1.57645713674;HMX1:1.51806010073;GLI1..3:1.46612769109;ATF6:1.42821688086;ZNF238:1.4229243416;RXR{A,B,G}:1.37420544136;MTF1:1.28946384558;TBP:1.27027709282;HOX{A4,D4}:1.25626202499;GCM1,2:1.20246435066;TFCP2:1.13424951499;MYBL2:1.11914535647;HSF1,2:1.09706264226;KLF4:1.0392143761;STAT2,4,6:1.03467531991;RREB1:0.985078880194;TLX1..3_NFIC{dimer}:0.972640764184;XBP1:0.966447279316;FOXO1,3,4:0.956258139543;IKZF1:0.956110717995;HOX{A6,A7,B6,B7}:0.945276036953;GFI1B:0.924028704821;TEAD1:0.890141914415;NFATC1..3:0.888244875307;MAFB:0.887800078089;ZNF423:0.887360443798;PRDM1:0.884561585571;SMAD1..7,9:0.822624763072;HIF1A:0.774237589459;TFAP2B:0.765480998414;IRF1,2:0.751556632362;EBF1:0.749675590337;GZF1:0.740469669143;NR6A1:0.707904526318;TEF:0.697711330273;ZIC1..3:0.697196481248;TFAP2{A,C}:0.695677317511;GTF2I:0.682618347072;NANOG{mouse}:0.663091779663;SRF:0.643958059346;RXRA_VDR{dimer}:0.641626781684;POU6F1:0.633945144453;ESRRA:0.59882020264;HMGA1,2:0.589105022565;HOX{A5,B5}:0.583715491875;PAX4:0.560988088607;NKX3-1:0.552530820738;GTF2A1,2:0.518299250259;PAX5:0.492085286456;HAND1,2:0.487357705584;MTE{core}:0.474806754803;NR1H4:0.463621376231;HIC1:0.444343707485;ZBTB6:0.429899562652;XCPE1{core}:0.418998408066;MYFfamily:0.406475238354;VSX1,2:0.403991082877;NFE2L1:0.39283152207;PATZ1:0.378362718428;MAZ:0.364879173476;ZNF148:0.348235403134;TP53:0.341378769936;HLF:0.340987465092;ZNF384:0.338968294929;CDC5L:0.328886845302;NR3C1:0.300141707848;CDX1,2,4:0.299401866213;GATA4:0.295796362004;POU5F1:0.293207285293;NKX2-2,8:0.283996452953;TOPORS:0.241709276314;NKX2-1,4:0.224243812208;CEBPA,B_DDIT3:0.175193518491;TBX4,5:0.171731291945;SPZ1:0.131882222808;NFIL3:0.123075871537;EGR1..3:0.121901701637;LHX3,4:0.08888244817;FOXP3:0.0834436346629;AR:0.0808194175457;MZF1:0.0575933029302;TLX2:0.0487067189056;LMO2:0.0400899754624;bHLH_family:0.0400727466352;NFKB1_REL_RELA:0.0298489606442;REST:0.019736162959;PPARG:0.00892259608011;NHLH1,2:-0.0188620232141;MED-1{core}:-0.0207087122047;RUNX1..3:-0.0468374174134;AIRE:-0.0475530738626;MEF2{A,B,C,D}:-0.101759967517;BPTF:-0.103276716854;YY1:-0.131417298624;BACH2:-0.156566472993;NKX3-2:-0.169872653446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.173289544304;EP300:-0.177839105592;FOS_FOS{B,L1}_JUN{B,D}:-0.200309347025;FOXM1:-0.20512564488;IRF7:-0.213225509612;SP1:-0.231217474183;HNF4A_NR2F1,2:-0.231677841664;HBP1_HMGB_SSRP1_UBTF:-0.237455834675;NFE2L2:-0.241782525941;FOXQ1:-0.250428511158;HNF1A:-0.257476966326;FOSL2:-0.263565868025;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26548338016;ARID5B:-0.277879943706;RBPJ:-0.283466021371;ATF4:-0.291186786561;FOXD3:-0.297239157071;ATF5_CREB3:-0.298418686964;DMAP1_NCOR{1,2}_SMARC:-0.326409207947;SREBF1,2:-0.330666774395;RFX1:-0.344322189346;PDX1:-0.357759654379;AHR_ARNT_ARNT2:-0.366293629894;FOX{F1,F2,J1}:-0.376442456184;FOXP1:-0.424488330317;MYB:-0.443168223599;FOX{D1,D2}:-0.446677068925;IKZF2:-0.459239715918;FOX{I1,J2}:-0.476065838712;NFE2:-0.488701096684;SPI1:-0.494920351197;BREu{core}:-0.504734981915;NR5A1,2:-0.505710622242;SOX5:-0.514745350213;HOXA9_MEIS1:-0.54749269594;SOX17:-0.552788276673;ETS1,2:-0.584478808117;LEF1_TCF7_TCF7L1,2:-0.584961765704;SPIB:-0.603699528698;JUN:-0.603830081505;PRRX1,2:-0.607047486723;STAT5{A,B}:-0.61723438955;ATF2:-0.625545503161;CRX:-0.638480877545;ZBTB16:-0.647293564779;ZFP161:-0.647554997209;ONECUT1,2:-0.654072940221;CREB1:-0.657176130475;SNAI1..3:-0.6769601708;TFDP1:-0.699165511059;PAX3,7:-0.715190330372;ELK1,4_GABP{A,B1}:-0.783693764674;PITX1..3:-0.785188747054;POU3F1..4:-0.79876967463;STAT1,3:-0.800815179782;PAX6:-0.816203826705;DBP:-0.881651747329;NKX2-3_NKX2-5:-0.907825118686;T:-0.916357059395;ZEB1:-0.93245746419;ZNF143:-0.932627260324;POU1F1:-0.935495704913;PAX2:-0.936206328431;ADNP_IRX_SIX_ZHX:-0.946133521387;NRF1:-0.949200663637;E2F1..5:-0.953228707197;FOXN1:-0.954426982426;RFX2..5_RFXANK_RFXAP:-0.967607223254;GFI1:-0.985305381911;NKX6-1,2:-1.04089159633;NFIX:-1.07817320453;ELF1,2,4:-1.08855138203;RORA:-1.10452958428;TGIF1:-1.10720137466;MYOD1:-1.20015327893;FOXA2:-1.21510833749;CUX2:-1.22960394556;SOX2:-1.25226719824;POU2F1..3:-1.36352784362;PBX1:-1.39516844782;GATA6:-1.45890288173;PAX8:-1.46011807604;SOX{8,9,10}:-1.50496534442;NFY{A,B,C}:-1.6397273449;OCT4_SOX2{dimer}:-1.68682710152;ALX1:-1.7151800289;NANOG:-2.1840520029
 
|top_motifs=ESR1:2.25820900196;ALX4:2.12335028849;HES1:2.11443110855;UFEwm:1.85992408126;PAX1,9:1.760527234;TFAP4:1.74412095869;FOXL1:1.70654533408;EVI1:1.66743143849;TAL1_TCF{3,4,12}:1.60738324278;EN1,2:1.57645713674;HMX1:1.51806010073;GLI1..3:1.46612769109;ATF6:1.42821688086;ZNF238:1.4229243416;RXR{A,B,G}:1.37420544136;MTF1:1.28946384558;TBP:1.27027709282;HOX{A4,D4}:1.25626202499;GCM1,2:1.20246435066;TFCP2:1.13424951499;MYBL2:1.11914535647;HSF1,2:1.09706264226;KLF4:1.0392143761;STAT2,4,6:1.03467531991;RREB1:0.985078880194;TLX1..3_NFIC{dimer}:0.972640764184;XBP1:0.966447279316;FOXO1,3,4:0.956258139543;IKZF1:0.956110717995;HOX{A6,A7,B6,B7}:0.945276036953;GFI1B:0.924028704821;TEAD1:0.890141914415;NFATC1..3:0.888244875307;MAFB:0.887800078089;ZNF423:0.887360443798;PRDM1:0.884561585571;SMAD1..7,9:0.822624763072;HIF1A:0.774237589459;TFAP2B:0.765480998414;IRF1,2:0.751556632362;EBF1:0.749675590337;GZF1:0.740469669143;NR6A1:0.707904526318;TEF:0.697711330273;ZIC1..3:0.697196481248;TFAP2{A,C}:0.695677317511;GTF2I:0.682618347072;NANOG{mouse}:0.663091779663;SRF:0.643958059346;RXRA_VDR{dimer}:0.641626781684;POU6F1:0.633945144453;ESRRA:0.59882020264;HMGA1,2:0.589105022565;HOX{A5,B5}:0.583715491875;PAX4:0.560988088607;NKX3-1:0.552530820738;GTF2A1,2:0.518299250259;PAX5:0.492085286456;HAND1,2:0.487357705584;MTE{core}:0.474806754803;NR1H4:0.463621376231;HIC1:0.444343707485;ZBTB6:0.429899562652;XCPE1{core}:0.418998408066;MYFfamily:0.406475238354;VSX1,2:0.403991082877;NFE2L1:0.39283152207;PATZ1:0.378362718428;MAZ:0.364879173476;ZNF148:0.348235403134;TP53:0.341378769936;HLF:0.340987465092;ZNF384:0.338968294929;CDC5L:0.328886845302;NR3C1:0.300141707848;CDX1,2,4:0.299401866213;GATA4:0.295796362004;POU5F1:0.293207285293;NKX2-2,8:0.283996452953;TOPORS:0.241709276314;NKX2-1,4:0.224243812208;CEBPA,B_DDIT3:0.175193518491;TBX4,5:0.171731291945;SPZ1:0.131882222808;NFIL3:0.123075871537;EGR1..3:0.121901701637;LHX3,4:0.08888244817;FOXP3:0.0834436346629;AR:0.0808194175457;MZF1:0.0575933029302;TLX2:0.0487067189056;LMO2:0.0400899754624;bHLH_family:0.0400727466352;NFKB1_REL_RELA:0.0298489606442;REST:0.019736162959;PPARG:0.00892259608011;NHLH1,2:-0.0188620232141;MED-1{core}:-0.0207087122047;RUNX1..3:-0.0468374174134;AIRE:-0.0475530738626;MEF2{A,B,C,D}:-0.101759967517;BPTF:-0.103276716854;YY1:-0.131417298624;BACH2:-0.156566472993;NKX3-2:-0.169872653446;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.173289544304;EP300:-0.177839105592;FOS_FOS{B,L1}_JUN{B,D}:-0.200309347025;FOXM1:-0.20512564488;IRF7:-0.213225509612;SP1:-0.231217474183;HNF4A_NR2F1,2:-0.231677841664;HBP1_HMGB_SSRP1_UBTF:-0.237455834675;NFE2L2:-0.241782525941;FOXQ1:-0.250428511158;HNF1A:-0.257476966326;FOSL2:-0.263565868025;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.26548338016;ARID5B:-0.277879943706;RBPJ:-0.283466021371;ATF4:-0.291186786561;FOXD3:-0.297239157071;ATF5_CREB3:-0.298418686964;DMAP1_NCOR{1,2}_SMARC:-0.326409207947;SREBF1,2:-0.330666774395;RFX1:-0.344322189346;PDX1:-0.357759654379;AHR_ARNT_ARNT2:-0.366293629894;FOX{F1,F2,J1}:-0.376442456184;FOXP1:-0.424488330317;MYB:-0.443168223599;FOX{D1,D2}:-0.446677068925;IKZF2:-0.459239715918;FOX{I1,J2}:-0.476065838712;NFE2:-0.488701096684;SPI1:-0.494920351197;BREu{core}:-0.504734981915;NR5A1,2:-0.505710622242;SOX5:-0.514745350213;HOXA9_MEIS1:-0.54749269594;SOX17:-0.552788276673;ETS1,2:-0.584478808117;LEF1_TCF7_TCF7L1,2:-0.584961765704;SPIB:-0.603699528698;JUN:-0.603830081505;PRRX1,2:-0.607047486723;STAT5{A,B}:-0.61723438955;ATF2:-0.625545503161;CRX:-0.638480877545;ZBTB16:-0.647293564779;ZFP161:-0.647554997209;ONECUT1,2:-0.654072940221;CREB1:-0.657176130475;SNAI1..3:-0.6769601708;TFDP1:-0.699165511059;PAX3,7:-0.715190330372;ELK1,4_GABP{A,B1}:-0.783693764674;PITX1..3:-0.785188747054;POU3F1..4:-0.79876967463;STAT1,3:-0.800815179782;PAX6:-0.816203826705;DBP:-0.881651747329;NKX2-3_NKX2-5:-0.907825118686;T:-0.916357059395;ZEB1:-0.93245746419;ZNF143:-0.932627260324;POU1F1:-0.935495704913;PAX2:-0.936206328431;ADNP_IRX_SIX_ZHX:-0.946133521387;NRF1:-0.949200663637;E2F1..5:-0.953228707197;FOXN1:-0.954426982426;RFX2..5_RFXANK_RFXAP:-0.967607223254;GFI1:-0.985305381911;NKX6-1,2:-1.04089159633;NFIX:-1.07817320453;ELF1,2,4:-1.08855138203;RORA:-1.10452958428;TGIF1:-1.10720137466;MYOD1:-1.20015327893;FOXA2:-1.21510833749;CUX2:-1.22960394556;SOX2:-1.25226719824;POU2F1..3:-1.36352784362;PBX1:-1.39516844782;GATA6:-1.45890288173;PAX8:-1.46011807604;SOX{8,9,10}:-1.50496534442;NFY{A,B,C}:-1.6397273449;OCT4_SOX2{dimer}:-1.68682710152;ALX1:-1.7151800289;NANOG:-2.1840520029
 +
|xref=
 
}}
 
}}

Latest revision as of 06:33, 17 October 2017

Name:Synoviocyte, donor2
Species:Human (Homo sapiens)
Library ID:CNhs11992
Sample type:primary cells
Genomic View: UCSC
MicroRNAs:Including candidate novel miRNAs(CAGE samplessRNA samples)
Excluding candidate novel miRNAs(CAGE samplessRNA samples)
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuesynovium
dev stage57 years old adult
sexmale
age57
cell typesynovial cell
cell lineNA
companyCell Applications
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number2518
catalog numberCA408-R10a
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Accession numbers
MethodSample accession id
CAGE  SAMD00005012
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11992 CAGE DRX008517 DRR009389
Accession ID Hg19

Library idBAMCTSS
CNhs11992 DRZ000814 DRZ002199
Accession ID Hg38

Library idBAMCTSS
CNhs11992 DRZ012164 DRZ013549
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005012
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10004.GGTAGC sRNA-Seq DRX037054 DRR041420
Accession ID Hg19

Library idBAMCTSS
SRhi10004.GGTAGC DRZ007062


Relative expression to median (log10)


Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.224
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma--0.314
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.213
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0832
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19--0.0969
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.135
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0832
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.62
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0766
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.318
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.548
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0.752
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus--0.417
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.394
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0421
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.496
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.819
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.394
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.153
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small--0.443
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.907
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.213
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0832
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.573
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.493
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0254
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.289
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte1.328
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.153
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.681
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0832
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.548
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Analyst:NA

link to dataset.
data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample


JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in this sample. Pearson's correlation between the number of TFBSs estimated by using the position-weight matrix for each promoter and its expression is expressed as Z-score by taking the ones based on random position-weight matrix, and the tail probability of the normal distribution corresponding to the Z-score is taken as the resulting P-value. Lower P-value indicates more (non-random) association of the motif to promoter expression
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11992

Jaspar motif P-value
MA0002.2 0.348
MA0003.1 0.19
MA0004.1 0.138
MA0006.1 0.186
MA0007.1 0.915
MA0009.1 0.738
MA0014.1 0.408
MA0017.1 0.579
MA0018.2 1.74856e-4
MA0019.1 0.78
MA0024.1 6.97717e-5
MA0025.1 0.0133
MA0027.1 0.234
MA0028.1 6.12936e-5
MA0029.1 0.894
MA0030.1 0.126
MA0031.1 0.569
MA0035.2 0.0162
MA0038.1 2.06947e-4
MA0039.2 0.0227
MA0040.1 0.844
MA0041.1 0.781
MA0042.1 0.902
MA0043.1 0.00915
MA0046.1 0.0186
MA0047.2 0.422
MA0048.1 0.407
MA0050.1 0.0213
MA0051.1 0.0393
MA0052.1 0.635
MA0055.1 0.245
MA0057.1 0.14
MA0058.1 0.0676
MA0059.1 0.492
MA0060.1 5.95498e-18
MA0061.1 0.663
MA0062.2 8.27874e-13
MA0065.2 0.468
MA0066.1 0.4
MA0067.1 0.0562
MA0068.1 0.422
MA0069.1 0.252
MA0070.1 0.269
MA0071.1 0.583
MA0072.1 0.272
MA0073.1 0.651
MA0074.1 0.0737
MA0076.1 1.96565e-6
MA0077.1 0.0433
MA0078.1 0.867
MA0079.2 0.93
MA0080.2 4.49769e-7
MA0081.1 0.0167
MA0083.1 0.0128
MA0084.1 0.862
MA0087.1 0.652
MA0088.1 0.303
MA0090.1 0.00988
MA0091.1 0.141
MA0092.1 0.138
MA0093.1 0.0833
MA0099.2 9.97406e-5
MA0100.1 0.0706
MA0101.1 0.425
MA0102.2 0.312
MA0103.1 0.0452
MA0104.2 0.0393
MA0105.1 0.788
MA0106.1 0.358
MA0107.1 0.849
MA0108.2 0.00313
MA0111.1 0.213
MA0112.2 0.00704
MA0113.1 0.907
MA0114.1 0.728
MA0115.1 0.0971
MA0116.1 0.041
MA0117.1 0.477
MA0119.1 0.202
MA0122.1 0.705
MA0124.1 0.194
MA0125.1 0.0165
MA0131.1 0.23
MA0135.1 0.118
MA0136.1 2.79848e-10
MA0137.2 0.874
MA0138.2 0.174
MA0139.1 0.396
MA0140.1 0.0041
MA0141.1 0.1
MA0142.1 0.0133
MA0143.1 0.981
MA0144.1 0.454
MA0145.1 0.223
MA0146.1 0.465
MA0147.1 0.0594
MA0148.1 0.546
MA0149.1 0.824
MA0150.1 0.0159
MA0152.1 0.0398
MA0153.1 0.834
MA0154.1 0.318
MA0155.1 0.124
MA0156.1 3.02228e-12
MA0157.1 0.943
MA0159.1 0.0904
MA0160.1 0.991
MA0162.1 0.0559
MA0163.1 0.0117
MA0164.1 0.798
MA0258.1 0.344
MA0259.1 0.0518



FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in 169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above
Analyst: Michiel de Hoon


link to dataset.
data

library id: CNhs11992

Novel motif P-value
1 0.966
10 0.475
100 0.937
101 0.331
102 0.142
103 0.401
104 0.76
105 0.0921
106 0.0856
107 0.03
108 0.104
109 0.553
11 0.406
110 0.959
111 0.956
112 0.534
113 0.0639
114 0.113
115 0.00638
116 0.00435
117 0.424
118 0.817
119 0.955
12 0.557
120 0.531
121 0.168
122 0.0618
123 0.0517
124 0.146
125 0.514
126 0.425
127 0.563
128 0.0386
129 0.752
13 0.679
130 0.143
131 0.356
132 0.0786
133 0.16
134 0.543
135 0.435
136 0.755
137 0.602
138 0.548
139 0.265
14 0.75
140 0.375
141 0.731
142 0.326
143 0.576
144 0.185
145 0.606
146 0.167
147 0.393
148 0.863
149 0.0013
15 0.964
150 0.305
151 0.316
152 0.0245
153 0.208
154 0.834
155 0.935
156 0.765
157 0.871
158 0.00816
159 0.597
16 0.025
160 0.603
161 0.94
162 0.684
163 0.942
164 0.0565
165 0.406
166 0.0101
167 0.875
168 0.658
169 0.012
17 0.312
18 0.414
19 0.00327
2 0.152
20 0.465
21 0.0445
22 0.108
23 0.107
24 0.135
25 0.234
26 0.413
27 0.297
28 0.283
29 0.224
3 0.495
30 0.33
31 0.393
32 9.27558e-11
33 0.847
34 0.55
35 0.933
36 0.0515
37 0.124
38 0.622
39 0.126
4 0.495
40 0.231
41 0.29
42 0.623
43 0.565
44 0.122
45 0.697
46 0.456
47 0.427
48 0.763
49 0.915
5 0.843
50 0.447
51 0.829
52 0.341
53 0.244
54 0.688
55 0.411
56 0.567
57 0.915
58 0.583
59 0.0999
6 0.139
60 0.225
61 0.365
62 0.95
63 0.162
64 0.889
65 0.288
66 0.026
67 0.969
68 0.21
69 0.624
7 0.187
70 0.154
71 0.728
72 0.987
73 0.0148
74 0.249
75 0.877
76 0.504
77 0.00305
78 0.0731
79 0.00176
8 0.121
80 0.113
81 0.687
82 0.477
83 0.398
84 0.995
85 0.0158
86 0.564
87 0.54
88 0.241
89 0.0188
9 0.427
90 0.136
91 0.985
92 0.129
93 0.697
94 0.389
95 0.862
96 0.69
97 0.626
98 0.783
99 0.0622



de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown.
Analyst:NA
library id: CNhs11992


FANTOM5 (FF) ontology


Direct parent terms


Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship
Analyst: Hideya Kawaji

link to source data
data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000213 (lining cell)
0002078 (meso-epithelial cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000215 (barrier cell)
0000255 (eukaryotic cell)
0000214 (synovial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000483 (epithelium)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004120 (mesoderm-derived structure)
0004457 (cavity lining)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0006914 (squamous epithelium)
0004905 (articulation)
0000486 (multilaminar epithelium)
0006915 (stratified squamous epithelium)
0007616 (layer of synovial tissue)
0000042 (serous membrane)
0000982 (skeletal joint)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0002217 (synovial joint)
0002018 (synovial membrane of synovial joint)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0004770 (articular system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000187 (human synovial cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship
Analyst: Hideya Kawaji

link to source data
data

CL:0000134 (mesenchymal cell)
CL:0000222 (mesodermal cell)