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{{f5samples
{{f5samples
|id=FF:11597-120H4
|DRA_sample_Accession=CAGE@SAMD00005334
|name=Renal Epithelial Cells, donor2
|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005334
|sample_id=11597
|accession_numbers=CAGE;DRX008428;DRR009300;DRZ000725;DRZ002110;DRZ012075;DRZ013460
|rna_tube_id=120H4
|accession_numbers_RNASeq=sRNA-Seq;DRX037018;DRR041384;DRZ007026
|rna_box=120
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000483,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0006555,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0003914,UBERON:0000025,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003103,UBERON:0009569,UBERON:0004211,UBERON:0009773,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0001231,UBERON:0004819,UBERON:0005173,UBERON:0004810,UBERON:0001285,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0007684,UBERON:0000916
|rna_position=H4
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518,CL:1000449,CL:1000507,CL:1000494
|sample_cell_lot=N/A
|sample_cell_catalog=lot:0153
|sample_company=Sciencell/3H
|rna_lot_number=
|rna_catalog_number=SC4125
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=kidney
|sample_donor(cell lot)=
|sample_sex=
|sample_age=
|sample_ethnicity=
|rna_rin=10
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=epithelial cell of kidney
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_weight_ug=10
|rna_concentration=1.33
|sample_note=
|profile_hcage=CNhs12088,LSID839,release011,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=SRhi10003,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000144,CL:0000255,CL:0000548,CL:0002371,CL:0002518,CL:1000494,CL:1000497,CL:1000507
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000058,UBERON:0000061,UBERON:0000062,UBERON:0000064,UBERON:0000080,UBERON:0000083,UBERON:0000119,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001008,UBERON:0001062,UBERON:0001231,UBERON:0001285,UBERON:0002050,UBERON:0002100,UBERON:0002113,UBERON:0002120,UBERON:0002417,UBERON:0002532,UBERON:0002553,UBERON:0003060,UBERON:0003064,UBERON:0003074,UBERON:0003081,UBERON:0003103,UBERON:0003104,UBERON:0003220,UBERON:0003886,UBERON:0003887,UBERON:0003914,UBERON:0003918,UBERON:0004111,UBERON:0004120,UBERON:0004211,UBERON:0004810,UBERON:0004819,UBERON:0004875,UBERON:0004876,UBERON:0005095,UBERON:0005103,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005291,UBERON:0005423,UBERON:0005721,UBERON:0005754,UBERON:0006553,UBERON:0006554,UBERON:0006555,UBERON:0007684,UBERON:0007687,UBERON:0009142,UBERON:0009201
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000151
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr17:36105042..36105060,-!p1@HNF1B!2.02!103.76!HNF1B;;chr17:46703687..46703740,-!p1@HOXB9!2.01!102.30!HOXB9;;chr2:114036488..114036504,-!p1@PAX8!1.93!83.30!PAX8;;chr1:201979703..201979721,+!p2@ELF3!1.93!83.30!ELF3;;chr1:201979743..201979762,+!p1@ELF3!1.81!62.84!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.72!51.15!LHX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.59!38.00!POU3F3;;chr17:46682321..46682362,-!p1@HOXB6!1.56!35.07!HOXB6;;chr7:27205136..27205164,-!p1@HOXA9!1.52!32.15!HOXA9;;chr6:34204921..34204939,+!p3@HMGA1!1.50!873.91!HMGA1;;chr7:27153454..27153469,-!p2@HOXA3!1.50!30.69!HOXA3;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.61!IRF6;;chr6:50786591..50786614,+!p1@TFAP2B!1.46!27.77!TFAP2B;;chr17:46675558..46675577,-!p2@HOXB6!1.44!26.31!HOXB6;;chr10:102505493..102505546,+!p2@PAX2!1.41!24.84!PAX2;;chr17:46690839..46690884,-!p1@HOXB8!1.33!20.46!HOXB8;;chr17:46703826..46703845,-!p3@HOXB9!1.27!17.54!HOXB9;;chr12:66218212..66218244,+!p5@HMGA2!1.26!24.84!HMGA2;;chr7:27213893..27213954,-!p1@HOXA10!1.23!16.08!HOXA10;;chr21:38071430..38071456,+!p1@SIM2!1.23!16.08!SIM2;;chr2:5832508..5832524,+!p1@SOX11!1.23!16.08!SOX11;;chr6:10415276..10415341,-!p2@TFAP2A!1.22!19.00!TFAP2A;;chr17:46622205..46622218,-!p3@HOXB2!1.21!17.54!HOXB2;;chr17:46667594..46667619,-!p1@HOXB3!1.19!14.61!HOXB3;;chr17:7493405..7493419,-!p1@SOX15!1.19!14.61!SOX15;;chr7:27196217..27196246,-!p2@HOXA7!1.19!14.61!HOXA7;;chr7:27205106..27205134,-!p2@HOXA9!1.19!14.61!HOXA9;;chr17:46688334..46688385,-!p1@HOXB7!1.18!20.46!HOXB7;;chr12:66218255..66218304,+!p3@HMGA2!1.17!36.53!HMGA2;;chr17:41623692..41623715,-!p1@ETV4!1.15!55.53!ETV4;;chr17:46667628..46667642,-!p2@HOXB3!1.15!13.15!HOXB3;;chr17:46692624..46692659,-!p3@HOXB8!1.15!13.15!HOXB8;;chr2:176994408..176994492,+!p1@HOXD8!1.15!13.15!HOXD8;;chr12:66218183..66218209,+!p4@HMGA2!1.14!24.84!HMGA2;;chr20:42295745..42295765,+!p1@MYBL2!1.10!189.98!MYBL2;;chr2:177053386..177053402,+!p1@HOXD1!1.10!11.69!HOXD1;;chr7:27224795..27224840,-!p2@HOXA11!1.10!11.69!HOXA11;;chr17:46622229..46622257,-!p6@HOXB2!1.09!13.15!HOXB2;;chr11:61520075..61520136,+!p1@C11orf9!1.05!21.92!C11orf9;;chr5:3595977..3595999,+!p1@IRX1!1.05!10.23!IRX1;;chr6:50789717..50789729,+!p4@TFAP2B!1.05!10.23!TFAP2B;;chr7:27224842..27224872,-!p1@HOXA11!1.05!10.23!HOXA11;;chr2:176972000..176972025,+!p4@HOXD11!1.05!10.23!HOXD11;;chr16:51185172..51185197,-!p1@SALL1!1.05!10.23!SALL1;;chr12:3069037..3069119,+!p2@TEAD4!1.02!33.61!TEAD4;;chr16:86600426..86600441,+!p1@FOXC2!1.01!23.38!FOXC2;;chr12:54393880..54393962,+!p1@HOXC9!0.99!8.77!HOXC9;;chr5:2751762..2751784,-!p1@IRX2!0.99!8.77!IRX2;;chr7:27219833..27219845,-!p7@HOXA10!0.99!8.77!HOXA10;;chr20:30433396..30433414,-!p1@FOXS1!0.99!8.77!FOXS1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!0.99!8.77!POU3F3;;chr2:176973498..176973524,+!p1@HOXD10!0.99!8.77!HOXD10;;chr12:66218598..66218645,+!p2@HMGA2!0.98!40.92!HMGA2;;chr14:21994337..21994442,-!p1@SALL2!0.97!23.38!SALL2;;chr6:34204672..34204692,+!p1@HMGA1!0.96!929.45!HMGA1;;chr6:21597765..21597779,+!p2@SOX4!0.96!67.22!SOX4;;chr17:46622070..46622109,-!p1@HOXB2!0.94!17.54!HOXB2;;chr22:21355896..21355920,-!p4@THAP7!0.94!8.77!THAP7;;chr20:31350184..31350200,+!p1@DNMT3B!0.93!16.08!DNMT3B;;chr17:70117153..70117174,+!p1@SOX9!0.92!78.92!SOX9;;chr20:50721803..50721857,-!p2@ZFP64!0.92!11.69!ZFP64;;chr16:54320322..54320343,-!p7@IRX3!0.92!7.31!IRX3;;chr17:46667561..46667572,-!p4@HOXB3!0.92!7.31!HOXB3;;chr17:46692603..46692621,-!p6@HOXB8!0.92!7.31!HOXB8;;chr12:54402745..54402788,+!p1@HOXC8!0.92!7.31!HOXC8;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.92!7.31!HOXC5;;chr5:2751785..2751808,-!p2@IRX2!0.92!7.31!IRX2;;chr5:3595934..3595957,+!p2@IRX1!0.92!7.31!IRX1;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.31!HOXA4;;chr7:27192185..27192209,-!p1@HOXA3!0.92!7.31!HOXA3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.92!7.31!TFCP2L1;;chr12:54447599..54447630,+!p3@HOXC4!0.91!8.77!HOXC4;;chr17:7492684..7492778,-!p2@SOX15!0.89!14.61!SOX15;;chr6:10412600..10412637,-!p1@TFAP2A!0.89!11.69!TFAP2A;;chr6:1610293..1610310,+!p1@FOXC1!0.89!11.69!FOXC1;;chr17:41622925..41622976,-!p3@ETV4!0.89!10.23!ETV4;;chr3:52001448..52001478,-!p2@PCBP4!0.88!96.45!PCBP4;;chr2:25475120..25475176,-!p2@DNMT3A!0.87!8.77!DNMT3A;;chr15:83953397..83953425,-!p1@BNC1!0.86!7.31!BNC1;;chr6:21593973..21593988,+!p1@SOX4!0.85!233.82!SOX4;;chr19:49865646..49865718,-!p1@TEAD2!0.85!55.53!TEAD2;;chr12:66218003..66218018,+!p9@HMGA2!0.84!7.31!HMGA2;;chr12:54378984..54378996,+!p7@HOXC10!0.84!5.85!HOXC10;;chr1:6479968..6479986,-!p1@HES2!0.84!5.85!HES2;;chr4:299227..299272,-!p1@ZNF732!0.84!5.85!ZNF732;;chr6:100912785..100912822,-!p1@SIM1!0.84!5.85!SIM1;;chr6:134210243..134210257,+!p1@TCF21!0.84!5.85!TCF21;;chr7:27153428..27153440,-!p3@HOXA3!0.84!5.85!HOXA3;;chr15:67458491..67458505,+!p18@SMAD3!0.84!5.85!SMAD3;;chr17:46622175..46622186,-!p12@HOXB2!0.84!5.85!HOXB2;;chr17:46692318..46692362,-!p5@HOXB8!0.84!5.85!HOXB8;;chr17:46692457..46692484,-!p2@HOXB8!0.84!5.85!HOXB8;;chr17:46703528..46703549,-!p5@HOXB9!0.84!5.85!HOXB9;;chr17:46655704..46655718,-!p2@HOXB4!0.83!8.77!HOXB4;;chr17:46622114..46622138,-!p4@HOXB2!0.82!8.77!HOXB2;;chr12:3068544..3068597,+!p1@TEAD4!0.81!35.07!TEAD4;;chr11:65430554..65430579,-!p3@RELA!0.81!14.61!RELA;;chr12:66218378..66218401,+!p6@HMGA2!0.81!8.77!HMGA2;;chr19:45260775..45260838,+!p5@BCL3!0.81!7.31!BCL3;;chr12:66218836..66218888,+!p1@HMGA2!0.80!54.07!HMGA2;;chr15:67357924..67357952,+!p2@SMAD3!0.80!38.00!SMAD3;;chr3:52001426..52001447,-!p3@PCBP4!0.80!16.08!PCBP4;;chr17:38465413..38465438,+!p5@RARA!0.80!8.77!RARA;;chr6:21597370..21597408,+!p5@SOX4!0.80!8.77!SOX4;;chr16:29818199..29818216,+!p11@MAZ!0.79!8.77!MAZ;;chr20:42295713..42295738,+!p2@MYBL2!0.78!32.15!MYBL2;;chr1:151032922..151032951,+!p2@MLLT11!0.78!8.77!MLLT11;;chr6:21597600..21597664,+!p3@SOX4!0.78!8.77!SOX4;;chr6:34204973..34204990,+!p4@HMGA1!0.76!70.15!HMGA1;;chr6:19837592..19837621,+!p1@ID4!0.76!32.15!ID4;;chr2:60778035..60778060,-!p4@BCL11A!0.76!5.85!BCL11A;;chr1:935398..935465,-!p2@HES4!0.75!10.23!HES4;;chr1:8926441..8926473,-!p10@ENO1!0.75!7.31!ENO1;;chr1:935496..935509,-!p3@HES4!0.75!7.31!HES4;;chr16:54320646..54320672,-!p2@IRX3!0.75!7.31!IRX3;;chr16:8962853..8962878,-!p1@CARHSP1!0.74!292.28!CARHSP1;;chr5:176738887..176738934,-!p1@MXD3!0.74!33.61!MXD3;;chr11:45202580..45202606,+!p@chr11:45202580..45202606,+!0.74!5.85!PRDM11;;chr3:12329358..12329393,+!p3@PPARG!0.73!11.69!PPARG;;chr2:169312600..169312606,+!p2@CERS6!0.73!7.31!CERS6;;chr2:176969097..176969109,+!p3@HOXD11!0.73!4.38!HOXD11;;chr2:176969228..176969260,+!p1@HOXD11!0.73!4.38!HOXD11;;chr2:176981499..176981522,+!p2@HOXD10!0.73!4.38!HOXD10;;chr2:177001290..177001315,+!p1@HOXD3!0.73!4.38!HOXD3;;chr7:27183263..27183284,-!p2@HOXA5!0.73!4.38!HOXA5;;chr7:27195867..27195893,-!p3@HOXA7!0.73!4.38!HOXA7;;chr8:76319876..76319926,+!p1@HNF4G!0.73!4.38!HNF4G;;chr15:80696606..80696633,+!p8@ARNT2!0.73!4.38!ARNT2;;chr16:51185318..51185348,-!p2@SALL1!0.73!4.38!SALL1;;chr16:54319010..54319041,-!p8@IRX3!0.73!4.38!IRX3;;chr16:54964899..54964914,+!p2@IRX5!0.73!4.38!IRX5;;chr16:86600870..86600921,+!p2@FOXC2!0.73!4.38!FOXC2;;chr16:86601088..86601105,+!p5@FOXC2!0.73!4.38!FOXC2;;chr16:86612320..86612394,+!p1@FOXL1!0.73!4.38!FOXL1;;chr17:36104873..36104903,-!p3@HNF1B!0.73!4.38!HNF1B;;chr17:36105074..36105086,-!p2@HNF1B!0.73!4.38!HNF1B;;chr17:41622982..41623001,-!p11@ETV4!0.73!4.38!ETV4;;chr17:46703942..46703964,-!p4@HOXB9!0.73!4.38!HOXB9;;chr10:102495147..102495159,+!p4@PAX2!0.73!4.38!PAX2;;chr10:102505327..102505344,+!p1@PAX2!0.73!4.38!PAX2;;chr10:119303078..119303169,+!p2@EMX2!0.73!4.38!EMX2;;chr12:54378923..54378966,+!p1@HOXC10!0.73!4.38!HOXC10;;chr12:54379029..54379057,+!p2@HOXC10!0.73!4.38!HOXC10;;chr17:3571863..3571881,-!p1@TAX1BP3!0.71!330.27!TAX1BP3;;chr17:3571887..3571918,-!p2@TAX1BP3!0.70!51.15!TAX1BP3;;chr13:73633131..73633149,+!p1@KLF5!0.70!48.23!KLF5;;chr9:4300050..4300118,-!p1@GLIS3!0.70!29.23!GLIS3;;chr17:46687959..46688007,-!p2@HOXB7!0.70!5.85!HOXB7;;chr12:66218152..66218174,+!p10@HMGA2!0.70!4.38!HMGA2;;chr17:46622440..46622477,-!p5@HOXB2!0.69!4.38!HOXB2;;chr19:56652643..56652683,+!p1@ZNF444!0.68!23.38!ZNF444;;chr3:52001396..52001425,-!p4@PCBP4!0.68!7.31!PCBP4;;chr20:6748325..6748352,+!p1@BMP2!0.68!5.85!BMP2;;chr16:54964740..54964789,+!p1@IRX5!0.68!5.85!IRX5;;chr6:10412392..10412409,-!p4@TFAP2A!0.68!4.38!TFAP2A;;chr12:7079780..7079791,-!p2@PHB2!0.67!21.92!PHB2;;chr8:145669791..145669834,-!p1@TONSL!0.67!11.69!TONSL;;chr17:46675420..46675465,-!p3@HOXB6!0.67!4.38!HOXB6;;chr11:62369108..62369183,-!p3@MTA2!0.66!54.07!MTA2;;chr7:26191809..26191890,+!p1@NFE2L3!0.66!20.46!NFE2L3;;chr17:41622765..41622821,-!p2@ETV4!0.66!5.85!ETV4;;chr10:8096772..8096787,+!p2@GATA3!0.66!4.38!GATA3;;chr12:2986275..2986363,-!p1@FOXM1!0.65!40.92!FOXM1;;chr14:21994449..21994524,-!p2@SALL2!0.65!11.69!SALL2;;chr17:41622834..41622883,-!p6@ETV4!0.65!4.38!ETV4;;chr5:92920256..92920282,+!p7@NR2F1!0.65!4.38!NR2F1;;chr6:44233252..44233296,-!p1@NFKBIE!0.64!39.46!NFKBIE;;chr12:2986206..2986258,-!p2@FOXM1!0.64!23.38!FOXM1;;chr11:63684602..63684664,-!p1@RCOR2!0.64!7.31!RCOR2;;chr17:41623009..41623053,-!p4@ETV4!0.64!5.85!ETV4;;chr18:3450161..3450183,+!p1@TGIF1!0.63!131.53!TGIF1;;chr19:11071685..11071798,+!p1@SMARCA4!0.63!109.60!SMARCA4;;chr6:41514305..41514359,+!p2@FOXP4!0.63!32.15!FOXP4;;chr5:72744594..72744609,-!p1@FOXD1!0.63!17.54!FOXD1;;chr19:926001..926046,+!p1@ARID3A!0.63!13.15!ARID3A;;chr2:46524474..46524491,+!p4@EPAS1!0.63!8.77!EPAS1;;chr5:76383070..76383117,-!p3@ZBED3!0.63!7.31!ZBED3;;chr6:21597431..21597447,+!p8@SOX4!0.63!4.38!SOX4;;chr16:54320617..54320643,-!p3@IRX3!0.63!4.38!IRX3;;chr12:66218443..66218461,+!p8@HMGA2!0.63!4.38!HMGA2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.62!17.54!GLIS2;;chr6:21597514..21597578,+!p4@SOX4!0.62!5.85!SOX4;;chr15:67358163..67358192,+!p1@SMAD3!0.61!87.68!SMAD3;;chr1:151032860..151032918,+!p1@MLLT11!0.61!43.84!MLLT11;;chr1:935467..935484,-!p1@HES4!0.61!16.08!HES4;;chr2:239148671..239148686,-!p1@HES6!0.61!13.15!HES6;;chr19:1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002518;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:1000494;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 42:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Renal%2520Epithelial%2520Cells%252c%2520donor2.CNhs12088.11597-120H4.hg38.nobarcode.ctss.bed.gz
|id=FF:11597-120H4
|is_a=EFO:0002091;;FF:0000151
|is_obsolete=
|library_id=CNhs12088
|library_id_phase_based=2:CNhs12088
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11597
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10003.GATCAG.11597
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11597
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10003.GATCAG.11597
|name=Renal Epithelial Cells, donor2
|namespace=FANTOM5
|part_of=
|profile_cagescan=,,,
|profile_hcage=CNhs12088,LSID839,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=SRhi10003,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=120
|rna_catalog_number=SC4125
|rna_concentration=1.33
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0
|rna_lot_number=
|rna_od260/230=
|rna_od260/280=
|rna_position=H4
|rna_rin=10
|rna_sample_type=total RNA
|rna_tube_id=120H4
|rna_weight_ug=10
|rnaseq_library_id=SRhi10003.GATCAG
|sample_age=
|sample_category=primary cells
|sample_cell_catalog=lot:0153
|sample_cell_line=
|sample_cell_lot=N/A
|sample_cell_type=epithelial cell of kidney
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Sciencell/3H
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;5.50106882195712e-237!GO:0005737;cytoplasm;3.59857728836307e-179!GO:0043226;organelle;3.95378630435278e-140!GO:0043229;intracellular organelle;7.60817262123532e-140!GO:0043231;intracellular membrane-bound organelle;3.32356500323961e-131!GO:0043227;membrane-bound organelle;5.46745255158269e-131!GO:0044444;cytoplasmic part;2.26044094521014e-130!GO:0044422;organelle part;9.49913447287166e-128!GO:0044446;intracellular organelle part;1.29896851546287e-126!GO:0032991;macromolecular complex;6.7701049844243e-80!GO:0005515;protein binding;1.03413384803436e-75!GO:0005739;mitochondrion;1.87578840682505e-71!GO:0030529;ribonucleoprotein complex;2.16687808314102e-66!GO:0044237;cellular metabolic process;1.50964968357665e-59!GO:0044238;primary metabolic process;4.63595799001569e-57!GO:0043233;organelle lumen;2.56830625777972e-51!GO:0031974;membrane-enclosed lumen;2.56830625777972e-51!GO:0005840;ribosome;5.42763572720657e-51!GO:0031090;organelle membrane;7.910283014412e-50!GO:0043170;macromolecule metabolic process;3.85159278411627e-48!GO:0019538;protein metabolic process;1.11582735933585e-47!GO:0044428;nuclear part;5.41613622106445e-47!GO:0044429;mitochondrial part;1.78764173155267e-46!GO:0016043;cellular component organization and biogenesis;2.44693347672145e-46!GO:0003735;structural constituent of ribosome;7.34960316087864e-46!GO:0003723;RNA binding;1.06050281007429e-45!GO:0009058;biosynthetic process;2.61100063384603e-45!GO:0006412;translation;1.0865602556204e-44!GO:0044260;cellular macromolecule metabolic process;2.33636657680755e-43!GO:0044249;cellular biosynthetic process;4.39130714809752e-43!GO:0044267;cellular protein metabolic process;6.0400493486271e-43!GO:0043234;protein complex;2.49811107473637e-42!GO:0031967;organelle envelope;8.5511456272714e-42!GO:0031975;envelope;1.97077239881438e-41!GO:0033279;ribosomal subunit;1.82780651638709e-39!GO:0009059;macromolecule biosynthetic process;3.36241285251386e-37!GO:0005634;nucleus;3.26701892786247e-35!GO:0005829;cytosol;9.64111989454744e-34!GO:0043228;non-membrane-bound organelle;1.477485970545e-33!GO:0043232;intracellular non-membrane-bound organelle;1.477485970545e-33!GO:0015031;protein transport;2.84886668102668e-33!GO:0033036;macromolecule localization;4.96344947220929e-33!GO:0005740;mitochondrial envelope;8.48101899431254e-33!GO:0006996;organelle organization and biogenesis;9.19543556115191e-32!GO:0008104;protein localization;2.52806568944735e-31!GO:0046907;intracellular transport;5.18407839698517e-31!GO:0031966;mitochondrial membrane;4.06477484218641e-30!GO:0045184;establishment of protein localization;4.48996934758072e-30!GO:0019866;organelle inner membrane;5.08370023572249e-30!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.13370586841785e-29!GO:0005743;mitochondrial inner membrane;1.70411657433399e-28!GO:0006396;RNA processing;1.64303749252235e-27!GO:0031981;nuclear lumen;9.64746352115931e-27!GO:0065003;macromolecular complex assembly;2.34945453573538e-26!GO:0006886;intracellular protein transport;1.68647262098578e-24!GO:0022607;cellular component assembly;1.73420799240155e-24!GO:0044445;cytosolic part;5.34922499790444e-23!GO:0016071;mRNA metabolic process;1.9913817367685e-22!GO:0006259;DNA metabolic process;1.59586614544345e-21!GO:0007049;cell cycle;1.81262487162706e-20!GO:0015934;large ribosomal subunit;1.93533013180775e-20!GO:0051641;cellular localization;2.63570660042133e-20!GO:0051649;establishment of cellular localization;3.94322677346206e-20!GO:0015935;small ribosomal subunit;5.02860753582572e-20!GO:0008380;RNA splicing;5.49277552951317e-20!GO:0006119;oxidative phosphorylation;1.42788055656139e-19!GO:0043283;biopolymer metabolic process;2.11164670656565e-19!GO:0044455;mitochondrial membrane part;2.97568013836932e-19!GO:0006397;mRNA processing;7.67374633295812e-19!GO:0012505;endomembrane system;1.57301058108261e-18!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.64224755209459e-18!GO:0031980;mitochondrial lumen;2.60005762816927e-17!GO:0005759;mitochondrial matrix;2.60005762816927e-17!GO:0022402;cell cycle process;1.89746388916053e-16!GO:0048770;pigment granule;2.59734554538035e-16!GO:0042470;melanosome;2.59734554538035e-16!GO:0005783;endoplasmic reticulum;3.05457661217484e-16!GO:0000166;nucleotide binding;3.96291202273263e-16!GO:0005654;nucleoplasm;5.55314093377708e-16!GO:0000278;mitotic cell cycle;6.23198325943754e-16!GO:0005746;mitochondrial respiratory chain;6.51942326796161e-16!GO:0016462;pyrophosphatase activity;6.52543541602854e-16!GO:0051186;cofactor metabolic process;7.36566399143881e-16!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.01269045790366e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.05490439966435e-15!GO:0017111;nucleoside-triphosphatase activity;1.98049061293423e-15!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.05752703926249e-15!GO:0005681;spliceosome;3.77450066421969e-15!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.33830558734562e-15!GO:0006457;protein folding;7.38184145654296e-15!GO:0008134;transcription factor binding;9.28385610781658e-15!GO:0050136;NADH dehydrogenase (quinone) activity;1.05678749497211e-14!GO:0003954;NADH dehydrogenase activity;1.05678749497211e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.05678749497211e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.18722804411248e-14!GO:0044432;endoplasmic reticulum part;2.19351162939504e-14!GO:0010467;gene expression;2.36947293465258e-14!GO:0005794;Golgi apparatus;4.38108205281398e-14!GO:0012501;programmed cell death;4.58752791341403e-14!GO:0006915;apoptosis;8.00631327208976e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.43710746242698e-13!GO:0044265;cellular macromolecule catabolic process;3.0199989417958e-13!GO:0044451;nucleoplasm part;3.02805930717767e-13!GO:0044248;cellular catabolic process;3.60953582207287e-13!GO:0009057;macromolecule catabolic process;4.61108034619057e-13!GO:0006605;protein targeting;4.75855955943995e-13!GO:0043412;biopolymer modification;6.1380415614176e-13!GO:0005761;mitochondrial ribosome;7.13397027003215e-13!GO:0000313;organellar ribosome;7.13397027003215e-13!GO:0030964;NADH dehydrogenase complex (quinone);7.42965171071669e-13!GO:0045271;respiratory chain complex I;7.42965171071669e-13!GO:0005747;mitochondrial respiratory chain complex I;7.42965171071669e-13!GO:0042775;organelle ATP synthesis coupled electron transport;8.69400947297223e-13!GO:0042773;ATP synthesis coupled electron transport;8.69400947297223e-13!GO:0008219;cell death;1.95908213870486e-12!GO:0016265;death;1.95908213870486e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.45627781619502e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.59181570639743e-12!GO:0016874;ligase activity;3.28332482786114e-12!GO:0043285;biopolymer catabolic process;5.18294508195843e-12!GO:0006732;coenzyme metabolic process;5.56025026544822e-12!GO:0032553;ribonucleotide binding;6.37292212048066e-12!GO:0032555;purine ribonucleotide binding;6.37292212048066e-12!GO:0022403;cell cycle phase;7.12837183717128e-12!GO:0006464;protein modification process;8.09010278745804e-12!GO:0000502;proteasome complex (sensu Eukaryota);9.39722024513072e-12!GO:0017076;purine nucleotide binding;1.37777872335206e-11!GO:0051082;unfolded protein binding;2.22813743814383e-11!GO:0022618;protein-RNA complex assembly;2.22942435478047e-11!GO:0009055;electron carrier activity;3.96472911551571e-11!GO:0044427;chromosomal part;5.45888553999612e-11!GO:0005730;nucleolus;5.96876014709103e-11!GO:0006512;ubiquitin cycle;6.45234773600766e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.50081614146464e-11!GO:0051276;chromosome organization and biogenesis;7.7693901300421e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;8.27185926469882e-11!GO:0005789;endoplasmic reticulum membrane;1.09132221446797e-10!GO:0043067;regulation of programmed cell death;1.11265517161599e-10!GO:0000785;chromatin;1.22435602672552e-10!GO:0007067;mitosis;1.37471451042659e-10!GO:0042981;regulation of apoptosis;1.42791651367529e-10!GO:0000087;M phase of mitotic cell cycle;1.61831493140529e-10!GO:0005694;chromosome;2.53548821195262e-10!GO:0005635;nuclear envelope;3.78577775652297e-10!GO:0006323;DNA packaging;4.72420116907369e-10!GO:0051726;regulation of cell cycle;7.24158265844078e-10!GO:0003712;transcription cofactor activity;9.92264488597345e-10!GO:0000074;regulation of progression through cell cycle;1.02852125455689e-09!GO:0030163;protein catabolic process;1.06404970990511e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;1.15880574385372e-09!GO:0000375;RNA splicing, via transesterification reactions;1.15880574385372e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.15880574385372e-09!GO:0005524;ATP binding;1.23092825641376e-09!GO:0007005;mitochondrion organization and biogenesis;1.4408231802816e-09!GO:0048523;negative regulation of cellular process;1.62927523382333e-09!GO:0032559;adenyl ribonucleotide binding;1.66108527019836e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;1.84042121141804e-09!GO:0043687;post-translational protein modification;2.04628741233073e-09!GO:0019941;modification-dependent protein catabolic process;2.52133237013548e-09!GO:0043632;modification-dependent macromolecule catabolic process;2.52133237013548e-09!GO:0044257;cellular protein catabolic process;2.68300446094229e-09!GO:0031965;nuclear membrane;3.39311643126074e-09!GO:0006333;chromatin assembly or disassembly;3.53056121984872e-09!GO:0016192;vesicle-mediated transport;3.73738109940192e-09!GO:0006511;ubiquitin-dependent protein catabolic process;4.14267012718179e-09!GO:0030554;adenyl nucleotide binding;4.39417700094089e-09!GO:0051188;cofactor biosynthetic process;5.63162295347516e-09!GO:0006913;nucleocytoplasmic transport;8.85964033525443e-09!GO:0000279;M phase;8.85964033525443e-09!GO:0008135;translation factor activity, nucleic acid binding;1.06725206149329e-08!GO:0006163;purine nucleotide metabolic process;1.47732602816247e-08!GO:0009056;catabolic process;1.54053544715818e-08!GO:0030532;small nuclear ribonucleoprotein complex;1.57215667499696e-08!GO:0006461;protein complex assembly;1.58314902238211e-08!GO:0051169;nuclear transport;1.84233258914762e-08!GO:0006334;nucleosome assembly;2.28135336142675e-08!GO:0009259;ribonucleotide metabolic process;2.40098200774096e-08!GO:0044453;nuclear membrane part;2.40415193387438e-08!GO:0048519;negative regulation of biological process;2.40415193387438e-08!GO:0031497;chromatin assembly;2.52300813553631e-08!GO:0043069;negative regulation of programmed cell death;2.5406396320652e-08!GO:0048193;Golgi vesicle transport;2.67597794786326e-08!GO:0009150;purine ribonucleotide metabolic process;3.50260955624099e-08!GO:0065004;protein-DNA complex assembly;4.40200133396875e-08!GO:0017038;protein import;4.65154647813702e-08!GO:0016491;oxidoreductase activity;5.46401835486637e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.65243159423569e-08!GO:0005793;ER-Golgi intermediate compartment;5.9802676521544e-08!GO:0006974;response to DNA damage stimulus;6.78149400851699e-08!GO:0043066;negative regulation of apoptosis;6.89729129175531e-08!GO:0006916;anti-apoptosis;8.12466424220223e-08!GO:0042623;ATPase activity, coupled;8.21514412032755e-08!GO:0016887;ATPase activity;9.02592726465841e-08!GO:0006164;purine nucleotide biosynthetic process;9.22446875352325e-08!GO:0016740;transferase activity;1.18062986324894e-07!GO:0051301;cell division;1.22967079351043e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.2713690943267e-07!GO:0015630;microtubule cytoskeleton;1.36619563927167e-07!GO:0009260;ribonucleotide biosynthetic process;2.14476401637956e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.23405322514073e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.53915118425694e-07!GO:0016787;hydrolase activity;2.94913480570684e-07!GO:0005768;endosome;3.0422077442419e-07!GO:0065002;intracellular protein transport across a membrane;3.57339324854153e-07!GO:0003743;translation initiation factor activity;3.71745100508883e-07!GO:0009199;ribonucleoside triphosphate metabolic process;3.90701669526267e-07!GO:0009141;nucleoside triphosphate metabolic process;4.16404172849182e-07!GO:0006260;DNA replication;5.19457813903973e-07!GO:0006413;translational initiation;6.5365480874899e-07!GO:0009205;purine ribonucleoside triphosphate metabolic process;7.66008929567421e-07!GO:0009144;purine nucleoside triphosphate metabolic process;7.66008929567421e-07!GO:0006446;regulation of translational initiation;1.01018432715922e-06!GO:0042254;ribosome biogenesis and assembly;1.02159246419077e-06!GO:0005643;nuclear pore;1.06080459305642e-06!GO:0008565;protein transporter activity;1.1736039378287e-06!GO:0009719;response to endogenous stimulus;1.40704851461289e-06!GO:0015986;ATP synthesis coupled proton transport;1.53224176686519e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.53224176686519e-06!GO:0006366;transcription from RNA polymerase II promoter;1.71304854810731e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.71304854810731e-06!GO:0009142;nucleoside triphosphate biosynthetic process;1.83304574262352e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.83304574262352e-06!GO:0006281;DNA repair;1.84441113618384e-06!GO:0044431;Golgi apparatus part;1.88222089611037e-06!GO:0019829;cation-transporting ATPase activity;1.88222089611037e-06!GO:0009108;coenzyme biosynthetic process;2.0957379520747e-06!GO:0006399;tRNA metabolic process;2.20714662326729e-06!GO:0009117;nucleotide metabolic process;2.23498852939942e-06!GO:0008639;small protein conjugating enzyme activity;2.24392422660942e-06!GO:0016604;nuclear body;2.35679735773221e-06!GO:0046034;ATP metabolic process;2.45800838312066e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.75115233815713e-06!GO:0009060;aerobic respiration;2.8850932372991e-06!GO:0003924;GTPase activity;3.19078132417071e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.56247011802627e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.56247011802627e-06!GO:0006793;phosphorus metabolic process;3.82740103577369e-06!GO:0006796;phosphate metabolic process;3.82740103577369e-06!GO:0015078;hydrogen ion transmembrane transporter activity;4.28972372483697e-06!GO:0003714;transcription corepressor activity;4.30312403567698e-06!GO:0004842;ubiquitin-protein ligase activity;4.33036058753896e-06!GO:0051329;interphase of mitotic cell cycle;4.44398329994002e-06!GO:0016563;transcription activator activity;4.54850171386543e-06!GO:0031252;leading edge;4.59293627533729e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.64197195163133e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.64197195163133e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.64197195163133e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.1347758661912e-06!GO:0046930;pore complex;6.65692389587393e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;7.11538736957738e-06!GO:0019787;small conjugating protein ligase activity;7.76145661336114e-06!GO:0000786;nucleosome;8.77290277166347e-06!GO:0048468;cell development;9.83989131731822e-06!GO:0048522;positive regulation of cellular process;1.00569363803322e-05!GO:0051246;regulation of protein metabolic process;1.00569363803322e-05!GO:0007010;cytoskeleton organization and biogenesis;1.00580770577866e-05!GO:0006754;ATP biosynthetic process;1.00580770577866e-05!GO:0006753;nucleoside phosphate metabolic process;1.00580770577866e-05!GO:0045333;cellular respiration;1.04386849563807e-05!GO:0051325;interphase;1.18164710137879e-05!GO:0043038;amino acid activation;1.18564432368073e-05!GO:0006418;tRNA aminoacylation for protein translation;1.18564432368073e-05!GO:0043039;tRNA aminoacylation;1.18564432368073e-05!GO:0005839;proteasome core complex (sensu Eukaryota);1.24608923168612e-05!GO:0045259;proton-transporting ATP synthase complex;1.26615151621741e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.54503284875263e-05!GO:0005773;vacuole;1.61717108225212e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.84243706838685e-05!GO:0016023;cytoplasmic membrane-bound vesicle;2.0724870782283e-05!GO:0048475;coated membrane;2.09002085224161e-05!GO:0030117;membrane coat;2.09002085224161e-05!GO:0043623;cellular protein complex assembly;2.1333325168317e-05!GO:0006091;generation of precursor metabolites and energy;2.25767387312562e-05!GO:0005762;mitochondrial large ribosomal subunit;2.48151724583795e-05!GO:0000315;organellar large ribosomal subunit;2.48151724583795e-05!GO:0042802;identical protein binding;2.6988286127055e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.92837439163739e-05!GO:0031988;membrane-bound vesicle;2.96015986666193e-05!GO:0006752;group transfer coenzyme metabolic process;3.75148625200621e-05!GO:0005788;endoplasmic reticulum lumen;3.81380754194398e-05!GO:0030120;vesicle coat;4.11156279991896e-05!GO:0030662;coated vesicle membrane;4.11156279991896e-05!GO:0016881;acid-amino acid ligase activity;4.41692720939285e-05!GO:0016568;chromatin modification;4.67840043794585e-05!GO:0051170;nuclear import;4.8180020745137e-05!GO:0016310;phosphorylation;5.32046609190988e-05!GO:0019899;enzyme binding;5.5694975536058e-05!GO:0006606;protein import into nucleus;5.66566355542185e-05!GO:0044440;endosomal part;6.02803567496302e-05!GO:0010008;endosome membrane;6.02803567496302e-05!GO:0004298;threonine endopeptidase activity;6.65045303374085e-05!GO:0045454;cell redox homeostasis;7.04585836705971e-05!GO:0016853;isomerase activity;7.19696740024878e-05!GO:0000139;Golgi membrane;7.58464188006883e-05!GO:0005905;coated pit;7.7965730155575e-05!GO:0032446;protein modification by small protein conjugation;8.33354020450147e-05!GO:0044262;cellular carbohydrate metabolic process;8.96838266658209e-05!GO:0031410;cytoplasmic vesicle;9.13145383801558e-05!GO:0031982;vesicle;9.3831596463235e-05!GO:0006099;tricarboxylic acid cycle;9.47921649635493e-05!GO:0046356;acetyl-CoA catabolic process;9.47921649635493e-05!GO:0045786;negative regulation of progression through cell cycle;9.59166111096225e-05!GO:0005770;late endosome;9.63812710485742e-05!GO:0019843;rRNA binding;0.000102532081835961!GO:0008610;lipid biosynthetic process;0.000104359890970962!GO:0006084;acetyl-CoA metabolic process;0.000111454329265587!GO:0065009;regulation of a molecular function;0.000122392369201923!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000125316625500161!GO:0030029;actin filament-based process;0.000141694277558512!GO:0008654;phospholipid biosynthetic process;0.000151683427275958!GO:0005525;GTP binding;0.000170969208904257!GO:0016567;protein ubiquitination;0.000172489432537867!GO:0006364;rRNA processing;0.000182493520538505!GO:0000323;lytic vacuole;0.000186238247373785!GO:0005764;lysosome;0.000186238247373785!GO:0000245;spliceosome assembly;0.000195431276746862!GO:0031324;negative regulation of cellular metabolic process;0.000201983090452215!GO:0003697;single-stranded DNA binding;0.000207198288344391!GO:0007243;protein kinase cascade;0.000217823681207361!GO:0005813;centrosome;0.000219063499961898!GO:0006888;ER to Golgi vesicle-mediated transport;0.000247018391525389!GO:0016072;rRNA metabolic process;0.000253631696650719!GO:0006082;organic acid metabolic process;0.00025459951515021!GO:0006839;mitochondrial transport;0.000254968524847103!GO:0051187;cofactor catabolic process;0.000257180221107448!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00025919949273075!GO:0015399;primary active transmembrane transporter activity;0.00025919949273075!GO:0005667;transcription factor complex;0.000280213470980471!GO:0016564;transcription repressor activity;0.000282066208852992!GO:0048518;positive regulation of biological process;0.000294550128172379!GO:0019752;carboxylic acid metabolic process;0.00029983190796477!GO:0016607;nuclear speck;0.000305409360059666!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000325791064685483!GO:0006403;RNA localization;0.000343764233318161!GO:0003899;DNA-directed RNA polymerase activity;0.000344245566252185!GO:0005815;microtubule organizing center;0.00035075852376421!GO:0008632;apoptotic program;0.000363648935731465!GO:0000314;organellar small ribosomal subunit;0.000395608071498752!GO:0005763;mitochondrial small ribosomal subunit;0.000395608071498752!GO:0003713;transcription coactivator activity;0.00040850290458861!GO:0050657;nucleic acid transport;0.00040850290458861!GO:0051236;establishment of RNA localization;0.00040850290458861!GO:0050658;RNA transport;0.00040850290458861!GO:0005874;microtubule;0.00040850290458861!GO:0009109;coenzyme catabolic process;0.000437317502117219!GO:0009892;negative regulation of metabolic process;0.000440752033626506!GO:0051427;hormone receptor binding;0.000508474944782505!GO:0006626;protein targeting to mitochondrion;0.000643257071279359!GO:0033116;ER-Golgi intermediate compartment membrane;0.000651121374919674!GO:0030176;integral to endoplasmic reticulum membrane;0.000698165293106835!GO:0006979;response to oxidative stress;0.000700657466926972!GO:0008250;oligosaccharyl transferase complex;0.000745440462563434!GO:0043681;protein import into mitochondrion;0.000781210508110373!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000799113380606001!GO:0048471;perinuclear region of cytoplasm;0.000819124094440704!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000821060925665743!GO:0032561;guanyl ribonucleotide binding;0.000821060925665743!GO:0019001;guanyl nucleotide binding;0.000821060925665743!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000855489445617716!GO:0031968;organelle outer membrane;0.000880073530828054!GO:0008637;apoptotic mitochondrial changes;0.000890945608265369!GO:0035257;nuclear hormone receptor binding;0.000950898157791071!GO:0009165;nucleotide biosynthetic process;0.000979551657972586!GO:0001558;regulation of cell growth;0.00105248665687471!GO:0016126;sterol biosynthetic process;0.00113319994679806!GO:0016779;nucleotidyltransferase activity;0.0011673461106333!GO:0030867;rough endoplasmic reticulum membrane;0.0012255598856897!GO:0008026;ATP-dependent helicase activity;0.00125343518747403!GO:0019867;outer membrane;0.00127883707887453!GO:0007006;mitochondrial membrane organization and biogenesis;0.0012810970803067!GO:0001726;ruffle;0.00135367375448083!GO:0005819;spindle;0.00135457901460757!GO:0009967;positive regulation of signal transduction;0.00137808383010099!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.00138131373683145!GO:0016044;membrane organization and biogenesis;0.00140471054128683!GO:0046474;glycerophospholipid biosynthetic process;0.00150198421718136!GO:0043492;ATPase activity, coupled to movement of substances;0.00154237547057878!GO:0008361;regulation of cell size;0.00162771943089926!GO:0016049;cell growth;0.0016852747393336!GO:0005741;mitochondrial outer membrane;0.00173508945556268!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00173877658296991!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00184165320903502!GO:0051920;peroxiredoxin activity;0.00185340401511359!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00185340401511359!GO:0030027;lamellipodium;0.00200729522704497!GO:0005798;Golgi-associated vesicle;0.00216667785132486!GO:0001836;release of cytochrome c from mitochondria;0.00217133648605225!GO:0043065;positive regulation of apoptosis;0.00219903778535024!GO:0004386;helicase activity;0.00222171373567065!GO:0006778;porphyrin metabolic process;0.00228206793231798!GO:0033013;tetrapyrrole metabolic process;0.00228206793231798!GO:0051028;mRNA transport;0.00230915343775011!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00235449041932734!GO:0043068;positive regulation of programmed cell death;0.00251343662556153!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00260909953326654!GO:0015980;energy derivation by oxidation of organic compounds;0.00260909953326654!GO:0005791;rough endoplasmic reticulum;0.00268328127328404!GO:0030031;cell projection biogenesis;0.00273868050522374!GO:0046467;membrane lipid biosynthetic process;0.00274181690961148!GO:0006695;cholesterol biosynthetic process;0.00274876112063292!GO:0008283;cell proliferation;0.00277089530001891!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00290152522359593!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00293565326982196!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00297174506225197!GO:0005769;early endosome;0.0030856466771432!GO:0003676;nucleic acid binding;0.00308738682749433!GO:0045941;positive regulation of transcription;0.00309573997354753!GO:0007088;regulation of mitosis;0.0030962562077829!GO:0016481;negative regulation of transcription;0.00309756524185654!GO:0006520;amino acid metabolic process;0.00311405272246365!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00311405272246365!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00314566176768709!GO:0030118;clathrin coat;0.00319232641250418!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00343354024772724!GO:0005684;U2-dependent spliceosome;0.00345008459349268!GO:0018196;peptidyl-asparagine modification;0.00349687390062518!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00349687390062518!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00361692769614693!GO:0015992;proton transport;0.00361692769614693!GO:0006779;porphyrin biosynthetic process;0.00363035033668911!GO:0033014;tetrapyrrole biosynthetic process;0.00363035033668911!GO:0006414;translational elongation;0.0036697424680158!GO:0043488;regulation of mRNA stability;0.00372997424294563!GO:0043487;regulation of RNA stability;0.00372997424294563!GO:0040008;regulation of growth;0.00375800109214675!GO:0006818;hydrogen transport;0.00377282995291078!GO:0005048;signal sequence binding;0.00379253480710863!GO:0007264;small GTPase mediated signal transduction;0.00385805500338881!GO:0016859;cis-trans isomerase activity;0.00393946258719061!GO:0000151;ubiquitin ligase complex;0.00393946258719061!GO:0005885;Arp2/3 protein complex;0.00431062108179086!GO:0051348;negative regulation of transferase activity;0.00435587726296454!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00435587726296454!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00435587726296454!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00435587726296454!GO:0006007;glucose catabolic process;0.00469641263165379!GO:0033673;negative regulation of kinase activity;0.00471679421687206!GO:0006469;negative regulation of protein kinase activity;0.00471679421687206!GO:0043566;structure-specific DNA binding;0.00486202744072543!GO:0043021;ribonucleoprotein binding;0.0051117381477867!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00514702944455877!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00525639006808294!GO:0006595;polyamine metabolic process;0.00542622130807974!GO:0006740;NADPH regeneration;0.00571721101862724!GO:0006098;pentose-phosphate shunt;0.00571721101862724!GO:0006509;membrane protein ectodomain proteolysis;0.00571721101862724!GO:0033619;membrane protein proteolysis;0.00571721101862724!GO:0042168;heme metabolic process;0.00571721101862724!GO:0017166;vinculin binding;0.00584698698419788!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00584698698419788!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00584698698419788!GO:0030132;clathrin coat of coated pit;0.00596179239812125!GO:0005774;vacuolar membrane;0.00609421797257364!GO:0030133;transport vesicle;0.00609422687936188!GO:0046489;phosphoinositide biosynthetic process;0.00617305056732351!GO:0000082;G1/S transition of mitotic cell cycle;0.00632169636822887!GO:0050790;regulation of catalytic activity;0.00642507197001626!GO:0004576;oligosaccharyl transferase activity;0.0064408663397785!GO:0045893;positive regulation of transcription, DNA-dependent;0.0064408663397785!GO:0008092;cytoskeletal protein binding;0.00650868000617359!GO:0030119;AP-type membrane coat adaptor complex;0.00656193377216497!GO:0032508;DNA duplex unwinding;0.00671828157072029!GO:0032392;DNA geometric change;0.00671828157072029!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00676138035107136!GO:0015002;heme-copper terminal oxidase activity;0.00676138035107136!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00676138035107136!GO:0004129;cytochrome-c oxidase activity;0.00676138035107136!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00703820576974336!GO:0048487;beta-tubulin binding;0.00741656091311316!GO:0005996;monosaccharide metabolic process;0.00742751405193301!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00744419317645089!GO:0031902;late endosome membrane;0.00805072874200505!GO:0008094;DNA-dependent ATPase activity;0.00836384032716181!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00855725260620378!GO:0006613;cotranslational protein targeting to membrane;0.00864701461289213!GO:0007040;lysosome organization and biogenesis;0.0089136502310997!GO:0008629;induction of apoptosis by intracellular signals;0.00897872959931903!GO:0006783;heme biosynthetic process;0.00902520361257271!GO:0016301;kinase activity;0.00902520361257271!GO:0016272;prefoldin complex;0.00908224005161839!GO:0046483;heterocycle metabolic process;0.00923724531716216!GO:0030131;clathrin adaptor complex;0.00932742257225293!GO:0019318;hexose metabolic process;0.00939194353384249!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00939194353384249!GO:0006401;RNA catabolic process;0.00945792400271314!GO:0000075;cell cycle checkpoint;0.00964531024474626!GO:0003724;RNA helicase activity;0.00971937079885772!GO:0006402;mRNA catabolic process;0.010324396028313!GO:0051252;regulation of RNA metabolic process;0.0104404299868904!GO:0006672;ceramide metabolic process;0.0107190779500557!GO:0006268;DNA unwinding during replication;0.0108052783235509!GO:0051168;nuclear export;0.0108135396932775!GO:0006950;response to stress;0.0108781282200176!GO:0043284;biopolymer biosynthetic process;0.0110194594801462!GO:0006749;glutathione metabolic process;0.0110194594801462!GO:0046519;sphingoid metabolic process;0.0110194594801462!GO:0003729;mRNA binding;0.0110194594801462!GO:0046870;cadmium ion binding;0.0112684089884927!GO:0004674;protein serine/threonine kinase activity;0.0116927433677491!GO:0004680;casein kinase activity;0.0119777630376861!GO:0051101;regulation of DNA binding;0.0124035178506448!GO:0050662;coenzyme binding;0.0126556315868856!GO:0044437;vacuolar part;0.0127402447231551!GO:0008047;enzyme activator activity;0.0129386673454371!GO:0007051;spindle organization and biogenesis;0.0131393882043935!GO:0005657;replication fork;0.0136478117437596!GO:0004177;aminopeptidase activity;0.0136684568223601!GO:0006066;alcohol metabolic process;0.0136684568223601!GO:0006289;nucleotide-excision repair;0.0137436121677698!GO:0050794;regulation of cellular process;0.0137454250509045!GO:0003684;damaged DNA binding;0.0137962696877475!GO:0048037;cofactor binding;0.0140865799754758!GO:0030658;transport vesicle membrane;0.0141979376197793!GO:0030880;RNA polymerase complex;0.0143268046797612!GO:0001666;response to hypoxia;0.0143268046797612!GO:0006917;induction of apoptosis;0.0145144530675564!GO:0051789;response to protein stimulus;0.0146151093377657!GO:0006986;response to unfolded protein;0.0146151093377657!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0149288510292792!GO:0007033;vacuole organization and biogenesis;0.0152518978363682!GO:0040029;regulation of gene expression, epigenetic;0.0152893894626602!GO:0043154;negative regulation of caspase activity;0.0156054796956403!GO:0007346;regulation of progression through mitotic cell cycle;0.0163331329916103!GO:0046365;monosaccharide catabolic process;0.0166170720885003!GO:0007017;microtubule-based process;0.0172918397799612!GO:0035258;steroid hormone receptor binding;0.0173781014952679!GO:0004860;protein kinase inhibitor activity;0.0175791745391809!GO:0000096;sulfur amino acid metabolic process;0.0180609207617496!GO:0012502;induction of programmed cell death;0.0184726576658336!GO:0051287;NAD binding;0.0187406467437412!GO:0005862;muscle thin filament tropomyosin;0.0190681832671986!GO:0005765;lysosomal membrane;0.0193158282232375!GO:0030660;Golgi-associated vesicle membrane;0.0203916474519927!GO:0006118;electron transport;0.0204236167905247!GO:0030032;lamellipodium biogenesis;0.0207724672435234!GO:0006261;DNA-dependent DNA replication;0.0211490006837204!GO:0019320;hexose catabolic process;0.0211656093421151!GO:0030659;cytoplasmic vesicle membrane;0.0216385742737501!GO:0046822;regulation of nucleocytoplasmic transport;0.0217589395899021!GO:0006790;sulfur metabolic process;0.0221360673876886!GO:0016070;RNA metabolic process;0.0222788239717352!GO:0007242;intracellular signaling cascade;0.0222962745596305!GO:0006284;base-excision repair;0.0223721995660981!GO:0005975;carbohydrate metabolic process;0.0226174192375142!GO:0043086;negative regulation of catalytic activity;0.0226174192375142!GO:0016125;sterol metabolic process;0.0227741159004248!GO:0006383;transcription from RNA polymerase III promoter;0.0227741159004248!GO:0030125;clathrin vesicle coat;0.0228911495390901!GO:0030665;clathrin coated vesicle membrane;0.0228911495390901!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0229701033076478!GO:0005856;cytoskeleton;0.0232545853524607!GO:0000123;histone acetyltransferase complex;0.0233802018862663!GO:0000059;protein import into nucleus, docking;0.023709877101899!GO:0006739;NADP metabolic process;0.0240737384357575!GO:0031970;organelle envelope lumen;0.0242659252955854!GO:0045892;negative regulation of transcription, DNA-dependent;0.0242987999440873!GO:0005637;nuclear inner membrane;0.0242987999440873!GO:0003756;protein disulfide isomerase activity;0.0242987999440873!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0242987999440873!GO:0003682;chromatin binding;0.0249545404690793!GO:0008538;proteasome activator activity;0.0252227985090685!GO:0006807;nitrogen compound metabolic process;0.0252227985090685!GO:0008022;protein C-terminus binding;0.0252397794820066!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0252450393629228!GO:0043189;H4/H2A histone acetyltransferase complex;0.0255136730871212!GO:0030145;manganese ion binding;0.0256090900648485!GO:0051338;regulation of transferase activity;0.0266628813655852!GO:0016860;intramolecular oxidoreductase activity;0.0266628813655852!GO:0043414;biopolymer methylation;0.0270294090553579!GO:0006458;'de novo' protein folding;0.027043743826367!GO:0051084;'de novo' posttranslational protein folding;0.027043743826367!GO:0008139;nuclear localization sequence binding;0.027043743826367!GO:0050178;phenylpyruvate tautomerase activity;0.0272507605038975!GO:0016363;nuclear matrix;0.0274759683563244!GO:0005758;mitochondrial intermembrane space;0.0277398315975751!GO:0046164;alcohol catabolic process;0.0282613676024902!GO:0009303;rRNA transcription;0.0284890892792273!GO:0008652;amino acid biosynthetic process;0.0285532354261358!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0285532354261358!GO:0010257;NADH dehydrogenase complex assembly;0.0285532354261358!GO:0033108;mitochondrial respiratory chain complex assembly;0.0285532354261358!GO:0008186;RNA-dependent ATPase activity;0.0285963178114673!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0295219134437942!GO:0000428;DNA-directed RNA polymerase complex;0.0295219134437942!GO:0033559;unsaturated fatty acid metabolic process;0.0296060701596282!GO:0006636;unsaturated fatty acid biosynthetic process;0.0296060701596282!GO:0046394;carboxylic acid biosynthetic process;0.0299117439240021!GO:0016053;organic acid biosynthetic process;0.0299117439240021!GO:0006633;fatty acid biosynthetic process;0.0301669176258973!GO:0005869;dynactin complex;0.0306168489914281!GO:0008625;induction of apoptosis via death domain receptors;0.0306168489914281!GO:0016311;dephosphorylation;0.0308904587701886!GO:0030134;ER to Golgi transport vesicle;0.0317213381924981!GO:0003678;DNA helicase activity;0.0317433152603387!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0318515256398762!GO:0051087;chaperone binding;0.0325266106746144!GO:0008243;plasminogen activator activity;0.0327160265345932!GO:0035267;NuA4 histone acetyltransferase complex;0.0328075072936807!GO:0019206;nucleoside kinase activity;0.0331083489983635!GO:0007265;Ras protein signal transduction;0.0331083489983635!GO:0006096;glycolysis;0.0332144109659921!GO:0000209;protein polyubiquitination;0.0348032306407687!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0350223243689771!GO:0006519;amino acid and derivative metabolic process;0.0358372172927636!GO:0032507;maintenance of cellular protein localization;0.0358757477505503!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0359392057835013!GO:0044275;cellular carbohydrate catabolic process;0.036154743866892!GO:0000118;histone deacetylase complex;0.0370436462873307!GO:0008033;tRNA processing;0.0370436462873307!GO:0006730;one-carbon compound metabolic process;0.0371799790122632!GO:0016197;endosome transport;0.0374606208945426!GO:0019904;protein domain specific binding;0.0378081108026296!GO:0005938;cell cortex;0.0386780332755157!GO:0006612;protein targeting to membrane;0.0390779318002758!GO:0043281;regulation of caspase activity;0.0394760316839978!GO:0043549;regulation of kinase activity;0.0401739315209264!GO:0008286;insulin receptor signaling pathway;0.0401739315209264!GO:0006897;endocytosis;0.0404856350816895!GO:0010324;membrane invagination;0.0404856350816895!GO:0030521;androgen receptor signaling pathway;0.0412541170901608!GO:0006650;glycerophospholipid metabolic process;0.0423086980685117!GO:0043433;negative regulation of transcription factor activity;0.0424968424502251!GO:0022890;inorganic cation transmembrane transporter activity;0.0433979409883497!GO:0030508;thiol-disulfide exchange intermediate activity;0.0436497164656888!GO:0031072;heat shock protein binding;0.0439775526458693!GO:0000086;G2/M transition of mitotic cell cycle;0.0439854526151564!GO:0031529;ruffle organization and biogenesis;0.0439854526151564!GO:0000305;response to oxygen radical;0.0439854526151564!GO:0016791;phosphoric monoester hydrolase activity;0.0453836722027703!GO:0035035;histone acetyltransferase binding;0.0457857998357171!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0460405808088643!GO:0042393;histone binding;0.0461942938166084!GO:0051085;chaperone cofactor-dependent protein folding;0.0462658105189931!GO:0000902;cell morphogenesis;0.0462874256584412!GO:0032989;cellular structure morphogenesis;0.0462874256584412!GO:0006506;GPI anchor biosynthetic process;0.0471490559445569!GO:0032259;methylation;0.0471490559445569!GO:0009308;amine metabolic process;0.048477281640737!GO:0006611;protein export from nucleus;0.0490778313625049!GO:0015631;tubulin binding;0.0494799885555684!GO:0003711;transcription elongation regulator activity;0.0499844509281079
|sample_id=11597
|sample_note=
|sample_sex=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=RXRA_VDR{dimer}:1.69079465159;MYOD1:1.5593028254;EBF1:1.52791851721;ZNF423:1.5051925538;PBX1:1.47010363761;ESRRA:1.40562969029;XCPE1{core}:1.38223370467;TFAP2{A,C}:1.26809197771;GTF2A1,2:1.18440108268;HNF1A:1.17054537194;ZNF148:1.1535193292;POU2F1..3:1.14786601393;SNAI1..3:1.10915229318;HOX{A5,B5}:1.0903993999;NR5A1,2:1.08613183095;LMO2:1.01211095678;ZEB1:1.00450064977;LEF1_TCF7_TCF7L1,2:0.996847868608;NKX2-3_NKX2-5:0.979724661292;RXR{A,B,G}:0.946028511427;TFCP2:0.944912841518;GZF1:0.923210445896;STAT5{A,B}:0.87702004392;PAX8:0.862451001241;GFI1:0.837644560232;NR3C1:0.829852537397;FOXQ1:0.82483406103;ONECUT1,2:0.793338152123;TP53:0.720021242765;SPZ1:0.702926593938;MTF1:0.662043098573;TBP:0.638891666487;GLI1..3:0.635358845384;IKZF1:0.592024119446;TBX4,5:0.554349044064;ZBTB6:0.549839927704;NR6A1:0.522422035578;PPARG:0.519124119591;LHX3,4:0.512586316105;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.501006363801;ADNP_IRX_SIX_ZHX:0.499894901077;VSX1,2:0.464123095259;TFAP2B:0.445759325116;SP1:0.444975105596;PRRX1,2:0.42981479282;ZIC1..3:0.415370541837;FOSL2:0.409223422989;TEAD1:0.370664661926;NR1H4:0.361627291081;RREB1:0.358337025149;HNF4A_NR2F1,2:0.356355977809;SOX2:0.34812876875;E2F1..5:0.321547295678;GCM1,2:0.279275064326;JUN:0.272873257261;PAX1,9:0.256432634621;bHLH_family:0.242308250068;HIC1:0.242034751602;CRX:0.215068014028;TFDP1:0.213485948355;POU1F1:0.2125281664;SRF:0.183402036418;TLX1..3_NFIC{dimer}:0.181468466988;SOX{8,9,10}:0.170766345009;NFE2L2:0.170554136038;FOS_FOS{B,L1}_JUN{B,D}:0.162541842084;MEF2{A,B,C,D}:0.113734086579;BACH2:0.101829933075;STAT2,4,6:0.0798944158511;NFKB1_REL_RELA:0.057564395458;GTF2I:0.045436836423;POU5F1:0.0337071831764;ESR1:0.0200469577023;NFY{A,B,C}:0.0193293753314;OCT4_SOX2{dimer}:0.00174752104983;HOX{A6,A7,B6,B7}:-0.0160382792502;NHLH1,2:-0.0183274280742;UFEwm:-0.0215784204713;DBP:-0.0380240785229;NFE2:-0.0397320267986;RFX1:-0.0460005604245;REST:-0.0537728870977;SMAD1..7,9:-0.065629219569;EP300:-0.072042170556;NANOG:-0.0944973133943;GATA6:-0.104272539655;EN1,2:-0.112038998218;RORA:-0.127892451094;MED-1{core}:-0.135299449142;GFI1B:-0.141323393222;POU6F1:-0.148017039577;KLF4:-0.155591165652;SOX17:-0.163583685953;HOXA9_MEIS1:-0.173165404573;T:-0.183640224709;HES1:-0.191197422726;NFE2L1:-0.194604193207;HAND1,2:-0.196789523003;HMX1:-0.227882522083;PAX6:-0.228791077575;AR:-0.231938455755;CUX2:-0.237054370365;XBP1:-0.243363539548;TEF:-0.247589945238;PATZ1:-0.268209066153;SOX5:-0.269775340267;FOXL1:-0.275407969453;ALX1:-0.284077432769;PITX1..3:-0.297859865282;TFAP4:-0.299173587713;RUNX1..3:-0.311471682614;HLF:-0.31321416004;MZF1:-0.339082397791;CDC5L:-0.340647059074;MYB:-0.341197417347;MAZ:-0.35234506596;CEBPA,B_DDIT3:-0.353692828001;ETS1,2:-0.359666948873;ARID5B:-0.385461276003;FOX{F1,F2,J1}:-0.391328754422;ATF2:-0.45495440223;NFIL3:-0.470223390115;MYBL2:-0.476505343269;MTE{core}:-0.490438657679;SPIB:-0.500909387612;BREu{core}:-0.51315565667;POU3F1..4:-0.534397292857;TOPORS:-0.544211175622;ZFP161:-0.556561720444;FOXM1:-0.597692102905;SPI1:-0.634481751431;EGR1..3:-0.639601759406;PAX5:-0.650747968396;ZNF238:-0.663888921271;NFATC1..3:-0.666353392471;ZNF143:-0.67827443637;STAT1,3:-0.680642853318;HBP1_HMGB_SSRP1_UBTF:-0.724962198684;RFX2..5_RFXANK_RFXAP:-0.744703275024;ALX4:-0.759679572204;HOX{A4,D4}:-0.765917860346;FOXP3:-0.775677156228;TAL1_TCF{3,4,12}:-0.783992714055;NFIX:-0.786499664615;NANOG{mouse}:-0.794003867563;NKX3-2:-0.814071347922;NKX2-2,8:-0.816601012136;NKX3-1:-0.820781140186;FOXA2:-0.858679179985;MYFfamily:-0.871824907442;PRDM1:-0.884819287585;IRF1,2:-0.893761410357;YY1:-0.915407729026;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.918580675469;FOXD3:-0.919554530667;CDX1,2,4:-0.926067688856;ATF6:-0.928076738446;NRF1:-0.959059996079;EVI1:-0.966346102903;PDX1:-1.00189155339;ZNF384:-1.00973970687;TGIF1:-1.00985824671;FOX{D1,D2}:-1.03300765668;PAX2:-1.0602421049;FOXP1:-1.08267907092;ATF4:-1.09716432341;ATF5_CREB3:-1.10502581546;IRF7:-1.12849527584;IKZF2:-1.19532362669;SREBF1,2:-1.21907724234;HSF1,2:-1.22536268012;ZBTB16:-1.25109641515;TLX2:-1.27081823325;PAX4:-1.28941538095;AHR_ARNT_ARNT2:-1.30053450745;HIF1A:-1.3148766951;ELK1,4_GABP{A,B1}:-1.33062399958;NKX6-1,2:-1.3365549607;FOX{I1,J2}:-1.35635098188;GATA4:-1.38145023029;PAX3,7:-1.42145545917;MAFB:-1.4469155036;FOXO1,3,4:-1.47733674915;DMAP1_NCOR{1,2}_SMARC:-1.48601491801;ELF1,2,4:-1.49226943254;BPTF:-1.5826942658;CREB1:-1.66282791244;FOXN1:-1.69251639846;AIRE:-1.72600888165;NKX2-1,4:-1.9962610198;HMGA1,2:-2.26668217779;RBPJ:-2.36468008905
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11597-120H4;search_select_hide=table117:FF:11597-120H4
}}
}}

Latest revision as of 18:11, 4 June 2020

Name:Renal Epithelial Cells, donor2
Species:Human (Homo sapiens)
Library ID:CNhs12088
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stageNA
sexNA
ageNA
cell typeepithelial cell of kidney
cell lineNA
companySciencell/3H
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberSC4125
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005334
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12088 CAGE DRX008428 DRR009300
Accession ID Hg19

Library idBAMCTSS
CNhs12088 DRZ000725 DRZ002110
Accession ID Hg38

Library idBAMCTSS
CNhs12088 DRZ012075 DRZ013460
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
sRNA-Seq  SAMD00005334
Library accession numbers

Library idMethodExp. accession idRun accession id
SRhi10003.GATCAG sRNA-Seq DRX037018 DRR041384
Accession ID Hg19

Library idBAMCTSS
SRhi10003.GATCAG DRZ007026


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.0764
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural-0.0603
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.441
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0112
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.146
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.134
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.391
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.728
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.563
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12088

Jaspar motifP-value
MA0002.20.178
MA0003.10.375
MA0004.10.626
MA0006.10.151
MA0007.10.0133
MA0009.10.54
MA0014.10.976
MA0017.10.011
MA0018.20.186
MA0019.10.201
MA0024.10.75
MA0025.10.93
MA0027.10.515
MA0028.10.00252
MA0029.10.149
MA0030.10.308
MA0031.10.0369
MA0035.20.0166
MA0038.10.0662
MA0039.20.191
MA0040.10.85
MA0041.10.232
MA0042.10.833
MA0043.10.00615
MA0046.11.22636e-15
MA0047.20.791
MA0048.10.776
MA0050.12.47472e-4
MA0051.10.0132
MA0052.10.357
MA0055.10.181
MA0057.10.163
MA0058.10.922
MA0059.10.445
MA0060.10.0074
MA0061.10.212
MA0062.21.15303e-6
MA0065.20.00644
MA0066.10.208
MA0067.10.00298
MA0068.10.412
MA0069.10.524
MA0070.10.0876
MA0071.10.239
MA0072.10.942
MA0073.10.952
MA0074.10.279
MA0076.17.6063e-6
MA0077.10.121
MA0078.10.227
MA0079.20.844
MA0080.20.00301
MA0081.10.0577
MA0083.10.0224
MA0084.10.00721
MA0087.10.539
MA0088.10.779
MA0090.10.0285
MA0091.10.513
MA0092.10.626
MA0093.10.774
MA0099.21.84398e-6
MA0100.10.209
MA0101.10.32
MA0102.20.00498
MA0103.17.68108e-5
MA0104.20.839
MA0105.10.407
MA0106.10.00705
MA0107.10.268
MA0108.22.74667e-6
MA0111.10.566
MA0112.20.0418
MA0113.10.927
MA0114.10.0232
MA0115.10.388
MA0116.10.241
MA0117.10.211
MA0119.10.369
MA0122.10.799
MA0124.10.445
MA0125.10.73
MA0131.10.0531
MA0135.10.0722
MA0136.11.2055e-4
MA0137.20.182
MA0138.20.418
MA0139.10.531
MA0140.10.232
MA0141.10.0994
MA0142.10.0976
MA0143.10.764
MA0144.10.975
MA0145.10.195
MA0146.10.119
MA0147.10.899
MA0148.10.263
MA0149.10.128
MA0150.10.514
MA0152.10.234
MA0153.18.19573e-9
MA0154.10.107
MA0155.10.0373
MA0156.10.00176
MA0157.10.233
MA0159.10.0542
MA0160.10.13
MA0162.10.0571
MA0163.10.605
MA0164.10.809
MA0258.10.0403
MA0259.10.644



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12088

Novel motifP-value
10.876
100.327
1000.417
1010.272
1020.675
1030.577
1040.53
1050.0229
1060.0307
1070.00217
1080.578
1090.319
110.168
1100.294
1110.949
1120.605
1130.429
1140.749
1150.665
1160.306
1170.864
1180.793
1190.37
120.303
1200.29
1210.704
1220.216
1230.415
1240.733
1250.827
1260.603
1270.159
1280.164
1290.00212
130.391
1300.278
1310.354
1320.122
1330.0791
1340.942
1350.775
1360.984
1370.269
1380.289
1390.568
140.551
1400.335
1410.526
1420.197
1430.171
1440.695
1450.255
1460.0719
1470.321
1480.907
1490.125
150.393
1500.352
1510.573
1520.136
1530.0855
1540.254
1550.573
1560.226
1570.267
1580.971
1590.76
160.242
1600.00205
1611
1620.181
1630.931
1640.621
1650.866
1660.974
1670.46
1680.899
1690.0997
170.199
180.289
190.34
20.318
200.691
210.605
220.193
230.192
240.839
250.873
260.0813
270.169
280.371
290.688
30.792
300.142
310.403
320.925
330.0878
340.335
350.841
360.539
370.39
380.392
390.199
40.0556
400.00252
410.997
420.874
430.462
440.847
450.177
460.235
470.553
480.263
490.427
50.725
500.439
510.346
520.341
530.672
540.415
550.983
560.256
570.158
580.97
590.0217
60.324
600.304
610.397
620.943
630.198
640.139
650.0558
660.268
670.617
680.633
690.0574
70.765
700.363
710.777
720.765
730.129
740.402
750.899
760.206
770.0323
780.708
790.829
80.0549
800.977
810.706
820.816
830.716
840.488
850.707
860.696
870.179
880.5
890.139
90.513
900.243
910.0724
920.909
930.895
940.448
950.415
960.572
970.969
980.136
990.0109



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12088


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
1000449 (epithelial cell of nephron)
1000507 (kidney tubule cell)
1000494 (nephron tubule epithelial cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000483 (epithelium)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0006555 (excretory tube)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0003914 (epithelial tube)
0000025 (tube)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003103 (compound organ)
0009569 (subdivision of trunk)
0004211 (nephron epithelium)
0009773 (renal tubule)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0001231 (nephron tubule)
0004819 (kidney epithelium)
0005173 (abdominal segment element)
0004810 (nephron tubule epithelium)
0001285 (nephron)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0007684 (uriniferous tubule)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000151 (human renal epithelial cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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