FF:10786-110H3: Difference between revisions

Latest revision as of 15:04, 3 June 2020

Name:	testicular germ cell embryonal carcinoma cell line:ITO-II
Species:	Human (Homo sapiens)
Library ID:	CNhs11876
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	testis
dev stage	NA
sex	male
age	unknown
cell type	unclassifiable
cell line	ITO-II
company	JAPAN HEALTH SCIENCES FOUNDATION - Health Science Research Resources Bank
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004689

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11876		CAGE		DRX008022		DRR008894

Accession ID Hg19

Library id		BAM		CTSS
CNhs11876		DRZ000319		DRZ001704

Accession ID Hg38

Library id		BAM		CTSS
CNhs11876		DRZ011669		DRZ013054

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0696
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.46
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0.674
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0.116
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00291
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0.366
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0515
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0963
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0.747
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.132
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.156
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.243
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0422
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0.116
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.18
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.0422
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0102
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0.0422
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	2.024476e-4
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.534
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0806
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0422
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0.327
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0.453
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11876

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00213
MA0003.1	MA0003.1	0.808
MA0004.1	MA0004.1	0.484
MA0006.1	MA0006.1	0.126
MA0007.1	MA0007.1	0.983
MA0009.1	MA0009.1	0.76
MA0014.1	MA0014.1	0.0752
MA0017.1	MA0017.1	0.52
MA0018.2	MA0018.2	0.0569
MA0019.1	MA0019.1	0.218
MA0024.1	MA0024.1	2.75422e-5
MA0025.1	MA0025.1	0.299
MA0027.1	MA0027.1	0.654
MA0028.1	MA0028.1	0.0133
MA0029.1	MA0029.1	0.55
MA0030.1	MA0030.1	0.423
MA0031.1	MA0031.1	0.291
MA0035.2	MA0035.2	0.733
MA0038.1	MA0038.1	0.0121
MA0039.2	MA0039.2	0.00455
MA0040.1	MA0040.1	0.695
MA0041.1	MA0041.1	0.214
MA0042.1	MA0042.1	0.485
MA0043.1	MA0043.1	0.307
MA0046.1	MA0046.1	0.935
MA0047.2	MA0047.2	0.0854
MA0048.1	MA0048.1	0.247
MA0050.1	MA0050.1	1.25435e-8
MA0051.1	MA0051.1	2.59534e-5
MA0052.1	MA0052.1	0.0672
MA0055.1	MA0055.1	0.0199
MA0057.1	MA0057.1	0.907
MA0058.1	MA0058.1	0.421
MA0059.1	MA0059.1	0.841
MA0060.1	MA0060.1	1.40345e-9
MA0061.1	MA0061.1	3.84809e-4
MA0062.2	MA0062.2	0.112
MA0065.2	MA0065.2	0.442
MA0066.1	MA0066.1	0.839
MA0067.1	MA0067.1	0.368
MA0068.1	MA0068.1	0.0148
MA0069.1	MA0069.1	0.433
MA0070.1	MA0070.1	0.835
MA0071.1	MA0071.1	0.426
MA0072.1	MA0072.1	0.824
MA0073.1	MA0073.1	0.912
MA0074.1	MA0074.1	0.175
MA0076.1	MA0076.1	0.0478
MA0077.1	MA0077.1	0.0902
MA0078.1	MA0078.1	0.734
MA0079.2	MA0079.2	0.385
MA0080.2	MA0080.2	5.48466e-9
MA0081.1	MA0081.1	0.0309
MA0083.1	MA0083.1	0.364
MA0084.1	MA0084.1	0.271
MA0087.1	MA0087.1	0.866
MA0088.1	MA0088.1	0.885
MA0090.1	MA0090.1	0.264
MA0091.1	MA0091.1	0.00635
MA0092.1	MA0092.1	0.0497
MA0093.1	MA0093.1	0.339
MA0099.2	MA0099.2	3.48538e-5
MA0100.1	MA0100.1	0.944
MA0101.1	MA0101.1	0.0385
MA0102.2	MA0102.2	0.0261
MA0103.1	MA0103.1	3.31904e-4
MA0104.2	MA0104.2	0.639
MA0105.1	MA0105.1	4.41233e-6
MA0106.1	MA0106.1	0.978
MA0107.1	MA0107.1	0.00578
MA0108.2	MA0108.2	9.24011e-5
MA0111.1	MA0111.1	0.6
MA0112.2	MA0112.2	0.0285
MA0113.1	MA0113.1	0.0603
MA0114.1	MA0114.1	0.552
MA0115.1	MA0115.1	0.0807
MA0116.1	MA0116.1	9.73271e-4
MA0117.1	MA0117.1	0.745
MA0119.1	MA0119.1	0.00149
MA0122.1	MA0122.1	0.822
MA0124.1	MA0124.1	0.881
MA0125.1	MA0125.1	0.123
MA0131.1	MA0131.1	0.566
MA0135.1	MA0135.1	0.732
MA0136.1	MA0136.1	6.1217e-7
MA0137.2	MA0137.2	0.361
MA0138.2	MA0138.2	0.192
MA0139.1	MA0139.1	0.16
MA0140.1	MA0140.1	0.438
MA0141.1	MA0141.1	0.947
MA0142.1	MA0142.1	6.36608e-24
MA0143.1	MA0143.1	1.09778e-8
MA0144.1	MA0144.1	0.13
MA0145.1	MA0145.1	0.711
MA0146.1	MA0146.1	0.386
MA0147.1	MA0147.1	0.845
MA0148.1	MA0148.1	0.114
MA0149.1	MA0149.1	0.756
MA0150.1	MA0150.1	0.0241
MA0152.1	MA0152.1	0.655
MA0153.1	MA0153.1	0.841
MA0154.1	MA0154.1	0.0254
MA0155.1	MA0155.1	0.998
MA0156.1	MA0156.1	0.0022
MA0157.1	MA0157.1	0.153
MA0159.1	MA0159.1	0.526
MA0160.1	MA0160.1	0.954
MA0162.1	MA0162.1	0.791
MA0163.1	MA0163.1	0.00145
MA0164.1	MA0164.1	0.747
MA0258.1	MA0258.1	0.545
MA0259.1	MA0259.1	0.778

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11876

Novel motif	Logo	P-value
1	1	0.127
10	10	0.164
100	100	0.501
101	101	0.842
102	102	0.225
103	103	0.0113
104	104	0.791
105	105	0.334
106	106	0.0783
107	107	0.736
108	108	0.469
109	109	0.437
11	11	0.31
110	110	0.128
111	111	0.0432
112	112	0.345
113	113	0.101
114	114	0.0252
115	115	0.979
116	116	0.83
117	117	0.426
118	118	0.596
119	119	0.257
12	12	0.833
120	120	0.318
121	121	0.847
122	122	0.988
123	123	0.281
124	124	0.101
125	125	0.906
126	126	0.616
127	127	0.213
128	128	0.667
129	129	0.345
13	13	0.749
130	130	0.765
131	131	0.732
132	132	0.499
133	133	5.95488e-4
134	134	0.168
135	135	5.12793e-4
136	136	0.0427
137	137	0.451
138	138	0.0534
139	139	0.0889
14	14	0.909
140	140	0.363
141	141	0.575
142	142	0.534
143	143	0.00353
144	144	0.52
145	145	0.178
146	146	0.311
147	147	0.661
148	148	0.0312
149	149	0.00289
15	15	0.0895
150	150	0.946
151	151	0.0708
152	152	0.347
153	153	0.528
154	154	0.805
155	155	0.389
156	156	0.0459
157	157	0.749
158	158	0.656
159	159	0.339
16	16	0.335
160	160	0.319
161	161	0.242
162	162	0.437
163	163	0.515
164	164	0.787
165	165	0.693
166	166	0.19
167	167	0.361
168	168	0.522
169	169	0.209
17	17	0.72
18	18	0.55
19	19	0.0939
2	2	0.741
20	20	0.965
21	21	0.759
22	22	0.253
23	23	0.0312
24	24	0.556
25	25	0.645
26	26	0.662
27	27	0.616
28	28	0.808
29	29	0.504
3	3	0.0689
30	30	0.751
31	31	0.553
32	32	0.0121
33	33	0.887
34	34	0.712
35	35	0.246
36	36	0.599
37	37	0.417
38	38	0.59
39	39	0.509
4	4	0.85
40	40	0.755
41	41	0.301
42	42	0.403
43	43	0.0932
44	44	0.837
45	45	0.833
46	46	0.119
47	47	0.387
48	48	0.962
49	49	0.146
5	5	0.0814
50	50	0.488
51	51	0.972
52	52	0.87
53	53	0.402
54	54	0.809
55	55	0.109
56	56	0.993
57	57	0.861
58	58	0.0668
59	59	0.359
6	6	0.721
60	60	0.262
61	61	0.402
62	62	0.0249
63	63	0.243
64	64	0.538
65	65	0.191
66	66	0.571
67	67	0.733
68	68	0.277
69	69	0.34
7	7	0.899
70	70	0.0295
71	71	0.0355
72	72	0.519
73	73	0.695
74	74	0.0914
75	75	0.302
76	76	0.936
77	77	0.39
78	78	0.994
79	79	0.0528
8	8	0.116
80	80	0.0714
81	81	0.177
82	82	0.0776
83	83	0.0919
84	84	0.932
85	85	0.21
86	86	0.689
87	87	0.0212
88	88	0.149
89	89	0.112
9	9	0.107
90	90	0.26
91	91	0.202
92	92	0.129
93	93	0.314
94	94	0.465
95	95	0.509
96	96	0.0438
97	97	0.953
98	98	0.265
99	99	0.435

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11876

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:0000586 germ cell
DOID:3095 germ cell and embryonal cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample
FF:0101560 testicular cancer cell line sample
UBERON:0000922 embryo

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)
0000039 (germ line cell)
0000586 (germ cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
193 (reproductive organ cancer)
3095 (germ cell and embryonal cancer)
305 (carcinoma)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000473 (testis)
0000991 (gonad)
0005156 (reproductive structure)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003135 (male reproductive organ)
0003133 (reproductive organ)
0002323 (body cavity)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0003101 (male organism)
0000079 (male reproductive system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0101560 (testicular cancer cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0009117 (indifferent gonad)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005564 (gonad primordium)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0000926,UBERON:0000479,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0000990,UBERON:0002050,UBERON:0005423,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0003135,UBERON:0005291,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0001048,UBERON:0006598,UBERON:0003886,UBERON:0004176,UBERON:0002532,UBERON:0003101,UBERON:0000079,UBERON:0009196,UBERON:0009117,UBERON:0006603,UBERON:0005564
+|DRA_sample_Accession=CAGE@SAMD00004689
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000548,CL:0000012,CL:0000063,CL:0000066,CL:0000004,CL:0000255,CL:0000039,CL:0000586
+|accession_numbers=CAGE;DRX008022;DRR008894;DRZ000319;DRZ001704;DRZ011669;DRZ013054
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000473,UBERON:0000991,UBERON:0005156,UBERON:0000466,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003135,UBERON:0003133,UBERON:0002323,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0003101,UBERON:0000079
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000255,CL:0000039,CL:0000586
 |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:193,DOID:3095,DOID:305,DOID:2994
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120,FF:0101560
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:145701192..145701241,-!p1@FOXH1!2.35!222.13!FOXH1;;chr20:31350184..31350200,+!p1@DNMT3B!2.34!437.33!DNMT3B;;chr10:135043702..135043729,+!p1@UTF1!2.30!197.55!UTF1;;chr4:188916918..188916942,+!p1@ZFP42!2.01!101.38!ZFP42;;chr3:181429704..181429722,+!p1@SOX2!1.98!94.75!SOX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!1.98!93.73!ZNF676;;chr19:22469236..22469266,+!p1@ZNF729!1.97!92.40!ZNF729;;chr19:22193731..22193751,-!p1@ZNF208!1.96!90.87!ZNF208;;chr21:45681774..45681821,-!p1@DNMT3L!1.96!90.87!DNMT3L;;chr17:7493405..7493419,-!p1@SOX15!1.93!84.55!SOX15;;chr19:20278043..20278054,+!p2@ZNF486!1.91!80.47!ZNF486;;chr6:29648890..29648944,-!p1@ZFP57!1.89!76.19!ZFP57;;chr16:3149278..3149305,-!p1@ZSCAN10!1.86!72.21!ZSCAN10;;chr6:31138439..31138475,-!p1@POU5F1!1.86!71.39!POU5F1;;chr12:19556998..19557013,+!p6@AEBP2!1.82!64.97!AEBP2;;chr10:70320074..70320106,+!p1@TET1!1.77!113.62!TET1;;chr8:73921136..73921151,+!p2@TERF1!1.73!78.43!TERF1;;chr19:20188776..20188826,+!p1@ZNF90!1.72!132.89!ZNF90;;chr2:122042770..122042785,-!p1@TFCP2L1!1.72!51.20!TFCP2L1;;chr21:45681737..45681760,-!p2@DNMT3L!1.71!50.69!DNMT3L;;chr10:126138597..126138612,-!p1@NKX1-2!1.70!49.36!NKX1-2;;chr8:70983476..70983493,-!p1@PRDM14!1.68!46.81!PRDM14;;chrX:136648279..136648295,+!p1@ZIC3!1.68!46.71!ZIC3;;chr2:25475094..25475112,-!p3@DNMT3A!1.68!46.40!DNMT3A;;chr1:44584485..44584512,+!p2@KLF17!1.66!45.18!KLF17;;chr7:63505799..63505904,+!p1@ZNF727!1.63!41.41!ZNF727;;chr10:135043493..135043510,+!p2@UTF1!1.61!39.88!UTF1;;chr8:145701166..145701187,-!p2@FOXH1!1.60!38.96!FOXH1;;chr19:20278012..20278034,+!p1@ZNF486!1.58!299.34!ZNF486;;chr17:41622765..41622821,-!p2@ETV4!1.57!54.67!ETV4;;chr17:41622925..41622976,-!p3@ETV4!1.57!53.65!ETV4;;chr3:181429741..181429767,+!p2@SOX2!1.52!31.82!SOX2;;chr20:55204351..55204377,+!p1@TFAP2C!1.50!39.06!TFAP2C;;chr17:46622205..46622218,-!p3@HOXB2!1.50!34.88!HOXB2;;chr20:55205825..55205847,+!p2@TFAP2C!1.50!30.80!TFAP2C;;chr9:127358120..127358170,-!p3@NR6A1!1.50!30.60!NR6A1;;chr8:37963466..37963506,+!p3@ASH2L!1.49!37.43!ASH2L;;chr17:41622834..41622883,-!p6@ETV4!1.47!33.96!ETV4;;chr1:164528687..164528711,+!p6@PBX1!1.46!32.64!PBX1;;chr2:88752207..88752218,-!p1@FOXI3!1.44!26.42!FOXI3;;chrX:136648643..136648711,+!p2@ZIC3!1.43!25.91!ZIC3;;chr19:22605097..22605121,-!p2@ZNF98!1.43!25.70!ZNF98;;chr12:7941989..7942014,+!p1@NANOG!1.42!25.40!NANOG;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.41!24.89!PEG3;;chr7:57509877..57509895,+!p1@ZNF716!1.41!24.89!ZNF716;;chr19:12163769..12163798,-!p1@ZNF878!1.40!30.90!ZNF878;;chr10:135051353..135051367,+!p1@VENTX!1.40!24.17!VENTX;;chr2:25475120..25475176,-!p2@DNMT3A!1.39!31.82!DNMT3A;;chr8:70983443..70983460,-!p2@PRDM14!1.38!23.15!PRDM14;;chr2:16080659..16080685,+!p1@MYCN!1.37!22.64!MYCN;;chr9:114287433..114287513,+!p1@ZNF483!1.36!55.99!ZNF483;;chr5:149546334..149546364,+!p1@CDX1!1.35!21.42!CDX1;;chr19:22235279..22235301,+!p1@ZNF257!1.33!37.74!ZNF257;;chr20:50418972..50419029,-!p1@SALL4!1.33!20.50!SALL4;;chr19:20188831..20188844,+!p2@ZNF90!1.32!19.79!ZNF90;;chr20:20348740..20348757,+!p1@INSM1!1.32!19.68!INSM1;;chr19:22469215..22469229,+!p2@ZNF729!1.31!19.48!ZNF729;;chr1:6304233..6304243,+!p1@HES3!1.30!18.77!HES3;;chr7:14028743..14028799,-!p3@ETV1!1.29!23.25!ETV1;;chr4:299227..299272,-!p1@ZNF732!1.28!17.95!ZNF732;;chr20:42295745..42295765,+!p1@MYBL2!1.27!281.49!MYBL2;;chr7:20826504..20826526,-!p1@SP8!1.27!17.75!SP8;;chrX:139587228..139587234,-!p1@SOX3!1.27!17.54!SOX3;;chr19:22817119..22817145,+!p1@ZNF492!1.26!28.66!ZNF492;;chr12:19556960..19556982,+!p10@AEBP2!1.26!17.24!AEBP2;;chrX:136648297..136648319,+!p3@ZIC3!1.26!17.03!ZIC3;;chr6:15246200..15246214,+!p2@JARID2!1.25!46.20!JARID2;;chr20:55205791..55205817,+!p3@TFAP2C!1.25!16.83!TFAP2C;;chr14:57272369..57272391,-!p2@OTX2!1.25!16.62!OTX2;;chr3:185797712..185797746,-!p6@ETV5!1.24!16.42!ETV5;;chr5:2751762..2751784,-!p1@IRX2!1.24!16.32!IRX2;;chr12:3068544..3068597,+!p1@TEAD4!1.23!94.65!TEAD4;;chr1:201979703..201979721,+!p2@ELF3!1.23!16.11!ELF3;;chr19:22605136..22605154,-!p1@ZNF98!1.23!15.91!ZNF98;;chr1:247171316..247171336,-!p3@ZNF695!1.22!23.25!ZNF695;;chr1:63788229..63788250,+!p1@FOXD3!1.22!15.60!FOXD3;;chr20:50419055..50419066,-!p3@SALL4!1.21!15.20!SALL4;;chr19:9609272..9609297,-!p1@ZNF560!1.19!14.58!ZNF560;;chr1:40367668..40367684,-!p2@MYCL1!1.18!14.07!MYCL1;;chr19:20011775..20011800,+!p2@ZNF93!1.17!24.48!ZNF93;;chr1:6479968..6479986,-!p1@HES2!1.17!13.67!HES2;;chr19:22193706..22193717,-!p2@ZNF208!1.16!13.56!ZNF208;;chr19:20150268..20150298,-!p2@ZNF682!1.15!24.58!ZNF682;;chr1:247171347..247171366,-!p2@ZNF695!1.15!23.76!ZNF695;;chr19:21950332..21950356,-!p2@ZNF100!1.14!26.93!ZNF100;;chr2:16081912..16081931,+!p2@MYCN!1.13!12.54!MYCN;;chr8:37963407..37963454,+!p2@ASH2L!1.12!36.41!ASH2L;;chr17:41622731..41622764,-!p5@ETV4!1.12!12.24!ETV4;;chr1:44584568..44584585,+!p3@KLF17!1.12!12.24!KLF17;;chr6:15246261..15246312,+!p1@JARID2!1.10!278.43!JARID2;;chr19:23433144..23433204,-!p1@ZNF724P!1.10!51.91!ZNF724P;;chr15:74833584.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+|ffid_belonging_in_development=UBERON:0009117,UBERON:0002532,UBERON:0006603,UBERON:0005564,UBERON:0010316
 |fonse_cell_line=FF:0101120,FF:0101560
 |fonse_cell_line_closure=FF:0101120,FF:0101560
@@ Line 36: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aITO-II.CNhs11876.10786-110H3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aITO-II.CNhs11876.10786-110H3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aITO-II.CNhs11876.10786-110H3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aITO-II.CNhs11876.10786-110H3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/testicular%2520germ%2520cell%2520embryonal%2520carcinoma%2520cell%2520line%253aITO-II.CNhs11876.10786-110H3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10786-110H3
 |is_a=CL:0000586;;DOID:3095;;EFO:0002091;;FF:0000210;;FF:0100297;;FF:0101560;;UBERON:0000922
 |is_obsolete=
+|library_id=CNhs11876
+|library_id_phase_based=2:CNhs11876
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10786
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10786
 |name=testicular germ cell embryonal carcinoma cell line:ITO-II
 |namespace=FANTOM5
@@ Line 44: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11876,LSID830,release010,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=110
 |rna_catalog_number=
@@ Line 59: / Line 78: @@
 |rna_weight_ug=32.62329
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=jcrb0613
 |sample_cell_line=ITO-II
@@ Line 80: / Line 100: @@
 |top_motifs=OCT4_SOX2{dimer}:4.08901325988;TOPORS:2.74673017497;PITX1..3:2.46991706517;XCPE1{core}:1.6318108417;SNAI1..3:1.47812428263;SP1:1.33275462895;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.32195963567;NFY{A,B,C}:1.24202989944;ZEB1:1.15767912786;E2F1..5:1.14513840929;MTF1:1.09591821802;NKX2-3_NKX2-5:1.05377550659;CUX2:1.03553129018;SOX{8,9,10}:1.01985931506;VSX1,2:0.994657678989;TFDP1:0.957494910543;CRX:0.928400451217;SOX2:0.913074821485;RORA:0.902638655452;ONECUT1,2:0.845151028665;HIF1A:0.842315049308;AIRE:0.838879897177;MYOD1:0.79736904463;STAT1,3:0.771259941632;ATF4:0.751878712566;STAT5{A,B}:0.747846234965;ZNF143:0.725412776606;ELK1,4_GABP{A,B1}:0.688246015062;bHLH_family:0.669039493457;FOXP1:0.666944178646;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.653725114391;LEF1_TCF7_TCF7L1,2:0.653537781658;EBF1:0.641424347647;MAZ:0.626398008127;POU2F1..3:0.579211487673;POU5F1:0.566922732869;TFAP2B:0.54411499424;IKZF2:0.511280953256;LMO2:0.495943267835;GFI1:0.48221077496;SOX17:0.474356559652;PBX1:0.46045479573;TEAD1:0.443685573612;ALX1:0.442604213689;PATZ1:0.442566886894;ZNF384:0.441061589097;EVI1:0.433013631779;HOX{A5,B5}:0.429439391201;FOXQ1:0.425970052973;CDC5L:0.410911275695;NRF1:0.39733424794;SREBF1,2:0.3569905769;ESRRA:0.347867552714;NR5A1,2:0.335321133681;CDX1,2,4:0.334450871119;LHX3,4:0.279829119046;MYB:0.268832477795;NANOG:0.26510094533;ZIC1..3:0.261801217129;RBPJ:0.169063275093;GZF1:0.160109934027;TBX4,5:0.151054141344;CREB1:0.140698508786;PAX2:0.132467596548;FOXD3:0.131043699488;BREu{core}:0.115547451134;KLF4:0.113453282035;TBP:0.111638067236;TFAP2{A,C}:0.110776670746;TP53:0.107073593654;HNF4A_NR2F1,2:0.0964173395784;ZBTB16:0.0906797818058;PAX1,9:0.0659924136807;YY1:0.051211134208;TEF:0.02424256703;GATA4:0.0063719256066;IKZF1:-0.00611771466339;T:-0.0295406643001;GATA6:-0.0376542552952;ZFP161:-0.0620527518001;ZBTB6:-0.0825768839497;FOXM1:-0.0904766104449;NFE2L2:-0.0993294699199;FOXN1:-0.122579848564;ADNP_IRX_SIX_ZHX:-0.154819719374;FOX{F1,F2,J1}:-0.172413124724;MZF1:-0.173824927734;POU1F1:-0.177714067732;PPARG:-0.177874901597;FOXO1,3,4:-0.178005247314;ATF2:-0.178124742229;MYBL2:-0.189162809251;HNF1A:-0.190199159867;ATF5_CREB3:-0.190714085535;FOXA2:-0.211291807367;GTF2I:-0.221050995825;REST:-0.230929673629;UFEwm:-0.235555119789;NR6A1:-0.241627881549;SRF:-0.242301446978;EN1,2:-0.258158989699;HOX{A4,D4}:-0.27237860943;PRRX1,2:-0.276099212446;TFAP4:-0.285230038208;PAX8:-0.299344752577;FOS_FOS{B,L1}_JUN{B,D}:-0.302282351791;ZNF148:-0.308020144724;HAND1,2:-0.321329737922;BACH2:-0.332494245273;FOXL1:-0.334055267071;GCM1,2:-0.34257696577;GFI1B:-0.349239425699;EGR1..3:-0.366806036611;NFE2:-0.377390440705;FOX{I1,J2}:-0.382573072046;RREB1:-0.383323915952;ZNF423:-0.388239756559;SPZ1:-0.389156621568;POU3F1..4:-0.390874404266;HIC1:-0.408643523989;HOX{A6,A7,B6,B7}:-0.413266238891;MYFfamily:-0.445696575443;NFKB1_REL_RELA:-0.450120575037;ARID5B:-0.464841783202;NFE2L1:-0.467706934291;FOSL2:-0.475619812774;NKX2-1,4:-0.498317279455;CEBPA,B_DDIT3:-0.506759804437;MED-1{core}:-0.508329765679;TFCP2:-0.538380624966;SPI1:-0.545232042978;NANOG{mouse}:-0.564042125379;TLX2:-0.564196908412;FOX{D1,D2}:-0.569607206775;SOX5:-0.575936480827;MTE{core}:-0.580229115618;HSF1,2:-0.589972767965;PRDM1:-0.596450205878;HLF:-0.605218234584;XBP1:-0.622176506704;NHLH1,2:-0.657627639327;SPIB:-0.663737295476;ETS1,2:-0.691332039514;MEF2{A,B,C,D}:-0.695900212681;JUN:-0.721216318965;ATF6:-0.770597860093;PAX5:-0.813858132219;PDX1:-0.817892866303;PAX4:-0.835465106934;RUNX1..3:-0.837889869714;GTF2A1,2:-0.854103393985;RFX1:-0.892803779833;NR1H4:-0.901292931074;ELF1,2,4:-0.902245814212;POU6F1:-0.902314150408;NKX6-1,2:-0.925820676016;AR:-0.934459646668;RXR{A,B,G}:-0.935859893;NKX3-2:-0.94226273675;MAFB:-0.955490620888;DMAP1_NCOR{1,2}_SMARC:-0.978231347372;HMGA1,2:-0.983333550455;NFIX:-0.985301915242;ESR1:-0.997358336693;ZNF238:-1.00843042941;RFX2..5_RFXANK_RFXAP:-1.01057091741;TLX1..3_NFIC{dimer}:-1.02061124986;TGIF1:-1.02462510493;FOXP3:-1.03476225537;HOXA9_MEIS1:-1.04356897611;NR3C1:-1.07611313696;NFIL3:-1.08336800698;HES1:-1.08432838226;IRF7:-1.10435283413;AHR_ARNT_ARNT2:-1.14600521959;TAL1_TCF{3,4,12}:-1.20099105639;EP300:-1.20330568492;NFATC1..3:-1.24749797507;HMX1:-1.28482176142;BPTF:-1.34519526294;PAX6:-1.35412111025;ALX4:-1.3577427645;PAX3,7:-1.39974909163;NKX3-1:-1.40092543556;NKX2-2,8:-1.40491091647;IRF1,2:-1.40569341199;STAT2,4,6:-1.52984977573;HBP1_HMGB_SSRP1_UBTF:-1.55300863557;DBP:-1.55652963533;GLI1..3:-1.67394527985;RXRA_VDR{dimer}:-1.87221839751;SMAD1..7,9:-2.15354557404
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10786-110H3;search_select_hide=table117:FF:10786-110H3
 }}

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FF:10786-110H3: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 15:04, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0